Job
Y54E2A_celgans
Submission Status: Success!
Full Status
Child Jobs
The job was split up into 4 child processes.
0 jobs are waiting
0 jobs are running
2 jobs finished sucessfully
2 jobs finished with no result
0 jobs encountered an error
1. Job "Y54E2A_celgans-child_1" finished sucessfully. See full results
2. Job "Y54E2A_celgans-child_2" finished sucessfully. See full results
3. Job "Y54E2A_celgans-child_3" finished with no result. See full results
4. Job "Y54E2A_celgans-child_4" finished with no result. See full results
Input
TTTTTTGCTCTAAATGTTTCTTTAAACTACTGTACTTCCAAATTTTTCGTTCTAGATCTCAAATGTTGAAACTCAACTTATGATATTTGTTCTCAATGAGGTCACTGAAGCAGCAAGTCCTATTTTTATTCATTTCCACAGTATTATGGTAAGTGGCCTAACTTTCCCCAATGGCCCAATTTTCCACAAATTCCAGCAACTACGGTTCTCTTCAACGAGGTCTTATCACATCGGGTCCATGCACATTTCCACTGCCACACTCTGCCAATTTCAGCGTTTTCTGTCAGATACCGTATCACAAGGTGAGTACCCAGCACGTCGTCTAACTTTTTCGACTTCTTCCAGACATCGTACGTCTGCGATCCGGGTGGTATCCTCTCGCGGACCGAGGTCGAGATGTTGCAGACGACGGCCATCAAGTTGAATATGACGTCATGTTTTTGCAGTAAATTTGAAAATTGCCAGCCAGGGATTCGTATAGCCGTAGTTCTTCTTCCATTTGTTAGCTGGAATAGTATTCGAGAATGTGATCCCACTTACACGTCATCATCGATATCCACGTCGACAATTTTATATGCGCAGTTGTTGTCGCTGCGGTGGCAAGGTAAGAGTTAGGCCATGGACTAGAAAGTGCAAAGAAAAAGTTAGGCCATACATATGAAATTCTCGGAGAAATTTAGATCACGCTGGTGAAAGTTAGGCCACGGACTAGAAAGTTATCAGTAACAGTTAGGCCATGAGCCAGAAAGTTTCCAGAACCGCCCTAGAAAAGCTATTAAGGCTATCGACTAACAAATCCTAAAAGTAAATTAGGCCATGGCCTAGAATGTTCTAAAAAATTAGGCCGCCCTAATGATCATGTAAACCTAGGCCACCAAAAACAAAAATTTCCAGAGCACTGTGACGCTGACGTCATCTTCGTCTACATCCAAAGTTGGCAGCCCGAACGACTTCGAACTCCGCTGCTCATTCCACTTTTCGGGTATTTCTAGGCCACCTATAGTAAGAAAAATTATCAATCGAGTGCACTTGCAGAAACCAGTGGCCACATCTTCGCAGATTCTCCATCCCAATCGTCACGTCGGCCAGGGAGACGACGCTAACCTCGCTGGAAAACGCCATGTCACACGCCAGCCGACTAATCCACGTGGATTTGTCGCCGGTGAGCGATGGTGCAATCGCGCTCCAATGACAATGTTTGAAGTTTTCAGGCTCACGCGGCGATTCCACGTTGGGCTCTCGCGTTTGGTGGAATAATGCTGTCAGTTGTGGTCGCGGCGATGTACGTGGCAAATTGTATTAGTGAAAAAATGGGTCAAAGGGTAATTTAGAAGTCTTGGGTTTTAAGCTAAAAATCGGAATTTCAGCGGCAAAAATCGCTGGTCCCAAAACGTGGAAACGAGAAGTTCCGGGCGGGATTCGGAGGCGGAGTGATGATGAATAGCTCGGGGAGCCAGAAGAAAAAGTCGGTGATGATGTTCCGGACGTTCTCAAAGAATAATCATAACAATAATAATAATAATAACAATAATCGATTATGAGTGTTTTTTTTCGGGTTTTTAAAATAAAGACTAGCTTGCCTTTTTCTTATCCCTTCTTATTTCATAATATTTTGAATAAATAAAAGATTGCGAAATTCCTATGATAAATTCTTATACGCGGAATCTCCGCTGAAAAAAAGGCAGGAGACTTGAAATTTCGCAATAATTTACCGTCTCCGATACCGCAGGAGTGCACATTTGTAATTGTTCAATGAATCTGTATATTATTTAGTGTAAACTAAAAATTATTTGATGAACACACATGATAAACTTTTAGATAGCACTTATGTACATATACATGAGAAATCCGGTGCTTAGATATGAACTCCTTTTTTTAAGCATAGGTTTTTAGGTTACCTGTTTTAGCGAGTTTGAATTAATCGTGGCAAAACTCACAGTCGTCAATAAAATGAACATATATAAAGTATTCAAACATACAAAGCAACAAAACTAATTGTAAATA
Selection Arguments
Sequences in the aligment must have a pairwise distance to any other sequence of 10.0%.
Sequences can only have pairwise distance to the input sequence of 60.0%.
Sequences are searched in the RefSeq Representative Genome Database.
Results
Coding Regions.
High Scoring Segment plot
Distribution of HSS in the input sequence
Filter regions
Result Table
| HSS id | Strand | Frame | Length | Start | End | Score | P | Show Result | |
|---|---|---|---|---|---|---|---|---|---|
| 1 | child_1_hss_0 | + | 1 | 90 | 336 | 605 | 190.645 | 0.000e+00 |
Plot |
| 2 | child_1_hss_1 | - | 3 | 66 | 338 | 535 | 88.227 | 8.692e-11 |
Plot |
| 3 | child_1_hss_2 | - | 3 | 23 | 539 | 607 | 28.902 | 0.015 |
Plot |
| 4 | child_2_hss_0 | + | 2 | 44 | 1036 | 1167 | 73.078 | 2.457e-10 |
Plot |
| 5 | child_2_hss_1 | + | 3 | 43 | 1367 | 1495 | 56.713 | 1.024e-07 |
Plot |
| 6 | child_2_hss_2 | - | 2 | 44 | 1366 | 1497 | 37.266 | 1.328e-04 |
Plot |
| 7 | child_2_hss_3 | - | 1 | 38 | 1050 | 1163 | 37.095 | 1.415e-04 |
Plot |
| 8 | child_2_hss_4 | + | 3 | 38 | 1211 | 1324 | 36.266 | 1.920e-04 |
Plot |
| 9 | child_2_hss_5 | + | 3 | 29 | 893 | 979 | 24.658 | 0.014 |
Plot |
Predicted protein sequence Download sequences as fasta
| HSS id | Sequence | |
|---|---|---|
| 1 | child_1_hss_0 | FFQTSYVCDPGGILSRTEVEMLQTTAIKLNMTSCFCSKFENCQPGIRIAVVLLPFVSWNSIRECDPTYTSSSISTSTILYAQLLSLRWQG |
| 2 | child_1_hss_1 | VGSHSRILFQLTNGRRTTAIRIPGWQFSNLLQKHDVIFNLMAVVCNISTSVRERIPPGSQTYDVWK |
| 3 | child_1_hss_2 | LPCHRSDNNCAYKIVDVDIDDDV |
| 4 | child_2_hss_0 | NQWPHLRRFSIPIVTSARETTLTSLENAMSHASRLIHVDLSPVS |
| 5 | child_2_hss_1 | RQKSLVPKRGNEKFRAGFGGGVMMNSSGSQKKKSVMMFRTFSK |
| 6 | child_2_hss_2 | FFENVRNIITDFFFWLPELFIITPPPNPARNFSFPRFGTSDFCR |
| 7 | child_2_hss_3 | TGDKSTWISRLACDMAFSSEVSVVSLADVTIGMENLRR |
| 8 | child_2_hss_4 | AHAAIPRWALAFGGIMLSVVVAAMYVANCISEKMGQRV |
| 9 | child_2_hss_5 | EHCDADVIFVYIQSWQPERLRTPLLIPLF |
Alignment Info
| Child | Size of alignment | Sequence list | RNAcode results |
|---|---|---|---|
| child_1 | 2 | Caenorhabditis remanei, Caenorhabditis briggsae | |
| child_2 | 3 | Caenorhabditis remanei, Caenorhabditis briggsae, Necator americanus | |
| child_3 | 20 | Caenorhabditis remanei, Caenorhabditis briggsae, Acipenser ruthenus, Serinus canaria, Polyodon spathula, Necator americanus, Theropithecus gelada, Rattus norvegicus, Octopus bimaculoides, Podarcis muralis, Pediculus humanus, Gambusia affinis, Anneissia japonica, Octopus vulgaris, Xiphophorus hellerii, Eptesicus fuscus, Brugia malayi, Loa loa, Brugia malayi, Caenorhabditis elegans | |
| child_4 | 5 | Acipenser ruthenus, Arachis hypogaea, Serinus canaria, Polyodon spathula, Brugia malayi | |
Download full results Download full results
