Job

Y54E2A_celgans-child_1

Submission Status: Success!

Full Status

1. Iteration

2. Iteration

3. Iteration

4. Iteration

5. Iteration

Blast

Select Sequences

Alignment

RNAcode

Input

TTTTTTGCTCTAAATGTTTCTTTAAACTACTGTACTTCCAAATTTTTCGTTCTAGATCTCAAATGTTGAAACTCAACTTATGATATTTGTTCTCAATGAGGTCACTGAAGCAGCAAGTCCTATTTTTATTCATTTCCACAGTATTATGGTAAGTGGCCTAACTTTCCCCAATGGCCCAATTTTCCACAAATTCCAGCAACTACGGTTCTCTTCAACGAGGTCTTATCACATCGGGTCCATGCACATTTCCACTGCCACACTCTGCCAATTTCAGCGTTTTCTGTCAGATACCGTATCACAAGGTGAGTACCCAGCACGTCGTCTAACTTTTTCGACTTCTTCCAGACATCGTACGTCTGCGATCCGGGTGGTATCCTCTCGCGGACCGAGGTCGAGATGTTGCAGACGACGGCCATCAAGTTGAATATGACGTCATGTTTTTGCAGTAAATTTGAAAATTGCCAGCCAGGGATTCGTATAGCCGTAGTTCTTCTTCCATTTGTTAGCTGGAATAGTATTCGAGAATGTGATCCCACTTACACGTCATCATCGATATCCACGTCGACAATTTTATATGCGCAGTTGTTGTCGCTGCGGTGGCAAGGTAAGAGTTAGGCCATGGACTAGAAAGTGCAAAGAAAAAGTTAGGCCATACATATGAAATTCTCGGAGAAATTTAGATCACGCTGGTGAAAGTTAGGCCACGGACTAGAAAGTTATCAGTAACAGTTAGGCCATGAGCCAGAAAGTTTCCAGAACCGCCCTAGAAAAGCTATTAAGGCTATCGACTAACAAATCCTAAAAGTAAATTAGGCCATGGCCTAGAATGTTCTAAAAAATTAGGCCGCCCTAATGATCATGTAAACCTAGGCCACCAAAAACAAAAATTTCCAGAGCACTGTGACGCTGACGTCATCTTCGTCTACATCCAAAGTTGGCAGCCCGAACGACTTCGAACTCCGCTGCTCATTCCACTTTTCGGGTATTTCTAGGCCACCTA

Selection Arguments

Sequences in the aligment must have a pairwise distance to any other sequence of 10.0%.

Sequences can only have pairwise distance to the input sequence of 60.0%.

Sequences are searched in the RefSeq Representative Genome Database.

Results

Coding Regions.

High Scoring Segment plot

Distribution of HSS in the input sequence

Filter regions

Result Table

	HSS id	Strand	Frame	Length	Start	End	Score	P	Show Result
1	0	+	1	90	336	605	190.645	0.000e+00	Plot
2	1	-	3	66	338	535	88.227	8.692e-11	Plot
3	2	-	3	23	539	607	28.902	0.015	Plot

Predicted protein sequence Download sequences as fasta

	HSS id	Sequence
1	0	FFQTSYVCDPGGILSRTEVEMLQTTAIKLNMTSCFCSKFENCQPGIRIAVVLLPFVSWNSIRECDPTYTSSSISTSTILYAQLLSLRWQG
2	1	VGSHSRILFQLTNGRRTTAIRIPGWQFSNLLQKHDVIFNLMAVVCNISTSVRERIPPGSQTYDVWK
3	2	LPCHRSDNNCAYKIVDVDIDDDV

Alignment Info

Alignment Tree

Full Alignment

Reference sequence (1): Target
Identities normalised by aligned length.
Colored by: consensus/70%

                                                         cov    pid  1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .         .         .         .         :         .         .         .         .         6         .         .         .         .         :         .         .         .         .         7         .         .         .         .         :         .         .         .         .         8         .         .         .         .         :         .         .         .         .         9         .         .         .         .         :         .         .         .         .         0         .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         ] 1160
1 Target                                              100.0% 100.0%    ----------------------------------------------------------------------TTTTTTGCTCT--------------------------------AAATGTTTCTTTAAACTACTGTACTTCCAAATTTTTC-GTTCTAGATCTCAAATGTTGAAACTCAACTTATGATATTTGTTCTCAATGAGGTCACTGAAGCAGCAAGTCCTATTTTTATTCATTT---------CCACAGTATTATGGTAAGTGGCCTAACTTTCCCCAATGGCCCAA--------TTTTCCA-CAAA-----TTCCAGCAACTACGGTTCTCT--TCAACGAGGTCTTATCACATCGGG-----TCCATGCACATTTCC------ACTGCCACACTCTGC-CAATT---TCAGCGTTTTCTGTCAGATACCGTATCACAAGGTGAGTACCCAGCACGTCGTCTAACTTTTTCGACTTCTTCCAGACATCGTACGTCTGCGATCCGGGTGGTATCCTCTCGCGGACCGAGGTCGAGATGTTGCAGACGACGGCCATCAAGTTGAATATGACGTCATGTTTTTGCAGTAAATTTGAAAATTGCCAGCCAGGGATTCGTATAGCCGTAGTTCTTCTTCCATTTGTTAGCTGGAATAGTATTCGAGAATGTGATCCCACTTACACGTCATCATCGATATCCACGTCGACAATTTTATATGCGCAGTTGTTGTCGCTGCGGTGGCAAGGTAAGAGTTAGGCCATGGACTAGAAAGTGCAAAGAAAAAGTTAGGCCATACATATGAAATTCTCGGAGAAATTTAGATCAC-----GCTGGTGAAAGTTAGGCCACGGACTAGAA--AGTTATCAGTAACAGTTAGGCCATGAGCCAGAAAGTTTCCAGAACCGCCCTAGAAAAGCTATTAAGGCTATCGACTAACAAATCCTAAAAGTAAATTAGGCCATGGCCTAGAATGTTCTAAAAAATT-AGGCCGCCC---------TAATGATCATGTAAACCTAGGCCACCAAAAACAAAAATTTCCAGAGCACTGTGACGCTGACGTCATCTTCGTCTACATCCAAAGTTGGCAGCCCGAACGACTTCGAACTCCGCTGCTCATTCCACTTTTCGGGTATTTCTAGGCCACCTA     
2 Caenorhabditis_remanei-NW_003319661.1-571204_570935  85.9%  40.1%    GTACACCCCTCTATCTACAGTAACCCGAAAACTGCTACACTTAGCGTCTTCAGGGTTACTGTAGACGGCAAGGGGTACTGTAATTCTGTTTACGGTACCCCCCCCCCCCCACCTACAGTACCCTCTCACCGCTACAGTAACCCAATTCCAGCACGTACGGTTCTTCCCTTCAACGAGGTCTCATCACATCGGGTCCATGCACATTTCCACTGCCGACTTCCGCCAATTTTAGTGTTTTTTGTCAGATACCGTATCACAAGGTAGGTCAAATTTTATAAAT---------------TTTAGATGACTGGAAAGC--TGTAGAA--------------------AA-------------------------------------------ATTTTGAAAACAGATTCAGAATCCTCGCGACG-------TCAGCTTTCCG----GTCATATGTCTTATTTTTAAAAATTATGCACCTACCACTATTTCCAGACCCCATACGTCTGCGACCCGGGCGGTATTCTCTCCCGGACCGAAGTAGAGATGCTTCAAGCAACCGCCACCAAGTTAAACATGACTTCATGTTTCTGTAATAAATTCGGAAATTGCCAACCTGGTATTCGGATCGCCGTTGTTTTATTACCATTTGTTAGTTGGAATAGTATTCGAGAATGCGATCCGACTTACACGTCTTCTTCGATCTCCACGTCGACTATTCTATATGCACAATTGTTGTCGGTGAGGTGGCAAGGTAAGCGGGGTTATGAGATTTTGGAATTTCGGAAAG-TAGTATGCCTAGAAAGCTGAAGTCATGAGGATTCTGAATCTGTTTTCAGATTTTA----GCTACTGTAAGAATGAAGAG-AGTTACAAGACTTTTTGTGAGAATGACTTTTTGAATGCGAAGATCGGCGGTGACGGACGGTT--------TTCTAAATCAG----------CTTTATGGCATTAACCTTACAATTTCTATATATCTTAAAGCTGAAAACGTGAATCTGTTTTTAAATTTTTTCTAGCTTTAAAACAAACCGAGTTACAAGCT----ATCAAGCTGGCTTGA---------CTGTTTCAAACTGAAAAGTTCTCCAACTTCATACAACCCTAACTC-------------------------------     
3 Caenorhabditis_briggsae-NC_013486.1-4257095_4256828  91.5%  45.1%    -------------------------------------------------------------------------------------AAAATTCAAAACATTAGAAATCCAAAAATACTGGAATTTCAAAATTCAATATTTTCCCATTTTCAGCACGTACGGTTCGCCCATCCAACGAGGTCTCATCACATCGGGTCCATGCACATTTCCCCTACCGACATCTGCCAATTTTAGTGTTTTCTGCCAAATTCCGTATCATAAGGTTAGAAAAAAAAATGGCTAAAATATCCCAAAAAATTAATTTCCCTTGAAAAATCTTTTGAAAATCTATGAAATTTGACTAAAAACTTCATTCAAACATTGCGAAACTTCCATAACAAATTGCTGAAAATCTGTCAATATATATGGATTTTTAGCAGTTTTTTTTTGAATATCCCAG----GCTCATTTTTTTACTTTTCGACCCAAATTTAAAAAAAATATTTTCAGACCCCATACGTCTGCGATCCAGGCGGCATTCTATCCCGTACCGAAGTTGAAATGCTCCAAAAAACTGCTCAAAAACTGAATATGACCTCTTGTTTCTGTTCAAAATATGGGAATTGTCAGCCCGGAATTCGAATCGCCGTCGTTTTATTGCCATTTGTCAGTTGGAATTCGATTCGAGAGTGCGATCCGACGTATACAAGTTCATCGATTTCGACATCAACTATTTTATATGCACAATTGTTGTCTGTTCGGTGGCAAGGTATTTTTTTCTATTTTTGAGTAGAGAATTCGAAAAATTTTACCCGGAAAACTCTAAAATTGGGCCGAAAAAGACTAAATAATCAAATCGACACAAAGTACAGTAAGACAAAGGCACAGGTCCTAGATTTTTT-TAGTCGTGACCTAGATTTTTT----TTAAGTCGTGACCTAGATTT--------TTTTAGGTCGTGACCTAGAT-TTTTTTGGGTCGTGACCTAGATTTTTTA----GGTTGTGGCCCAGTTTTTTTAGGTCCTGATCTAGATTTTTTAGGTCATGGCCCAGTTTTTTT---AGGT---------TGTGGCCTAG---------ATTTTTAAAGTTGGTGTACGGAGAAATTTTTTATTGCATCAAAAT-------------------------------     
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Job