Job

Y54E2A_celgans-child_2

Submission Status: Success!

Full Status

1. Iteration

2. Iteration

3. Iteration

4. Iteration

5. Iteration

Blast

Select Sequences

Alignment

RNAcode

Input

TGTTAGCTGGAATAGTATTCGAGAATGTGATCCCACTTACACGTCATCATCGATATCCACGTCGACAATTTTATATGCGCAGTTGTTGTCGCTGCGGTGGCAAGGTAAGAGTTAGGCCATGGACTAGAAAGTGCAAAGAAAAAGTTAGGCCATACATATGAAATTCTCGGAGAAATTTAGATCACGCTGGTGAAAGTTAGGCCACGGACTAGAAAGTTATCAGTAACAGTTAGGCCATGAGCCAGAAAGTTTCCAGAACCGCCCTAGAAAAGCTATTAAGGCTATCGACTAACAAATCCTAAAAGTAAATTAGGCCATGGCCTAGAATGTTCTAAAAAATTAGGCCGCCCTAATGATCATGTAAACCTAGGCCACCAAAAACAAAAATTTCCAGAGCACTGTGACGCTGACGTCATCTTCGTCTACATCCAAAGTTGGCAGCCCGAACGACTTCGAACTCCGCTGCTCATTCCACTTTTCGGGTATTTCTAGGCCACCTATAGTAAGAAAAATTATCAATCGAGTGCACTTGCAGAAACCAGTGGCCACATCTTCGCAGATTCTCCATCCCAATCGTCACGTCGGCCAGGGAGACGACGCTAACCTCGCTGGAAAACGCCATGTCACACGCCAGCCGACTAATCCACGTGGATTTGTCGCCGGTGAGCGATGGTGCAATCGCGCTCCAATGACAATGTTTGAAGTTTTCAGGCTCACGCGGCGATTCCACGTTGGGCTCTCGCGTTTGGTGGAATAATGCTGTCAGTTGTGGTCGCGGCGATGTACGTGGCAAATTGTATTAGTGAAAAAATGGGTCAAAGGGTAATTTAGAAGTCTTGGGTTTTAAGCTAAAAATCGGAATTTCAGCGGCAAAAATCGCTGGTCCCAAAACGTGGAAACGAGAAGTTCCGGGCGGGATTCGGAGGCGGAGTGATGATGAATAGCTCGGGGAGCCAGAAGAAAAAGTCGGTGATGATGTTCCGGACGTTCTCAAAGAATA

Selection Arguments

Sequences in the aligment must have a pairwise distance to any other sequence of 10.0%.

Sequences can only have pairwise distance to the input sequence of 60.0%.

Sequences are searched in the RefSeq Representative Genome Database.

Results

Coding Regions.

High Scoring Segment plot

Distribution of HSS in the input sequence

Filter regions

Result Table

	HSS id	Strand	Frame	Length	Start	End	Score	P	Show Result
1	0	+	2	44	1036	1167	73.078	2.457e-10	Plot
2	1	+	3	43	1367	1495	56.713	1.024e-07	Plot
3	2	-	2	44	1366	1497	37.266	1.328e-04	Plot
4	3	-	1	38	1050	1163	37.095	1.415e-04	Plot
5	4	+	3	38	1211	1324	36.266	1.920e-04	Plot
6	5	+	3	29	893	979	24.658	0.014	Plot

Predicted protein sequence Download sequences as fasta

	HSS id	Sequence
1	0	NQWPHLRRFSIPIVTSARETTLTSLENAMSHASRLIHVDLSPVS
2	1	RQKSLVPKRGNEKFRAGFGGGVMMNSSGSQKKKSVMMFRTFSK
3	2	FFENVRNIITDFFFWLPELFIITPPPNPARNFSFPRFGTSDFCR
4	3	TGDKSTWISRLACDMAFSSEVSVVSLADVTIGMENLRR
5	4	AHAAIPRWALAFGGIMLSVVVAAMYVANCISEKMGQRV
6	5	EHCDADVIFVYIQSWQPERLRTPLLIPLF

Alignment Info

Alignment Tree

Full Alignment

Reference sequence (1): Target
Identities normalised by aligned length.
Colored by: consensus/70%

                                                         cov    pid  1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .         .         .         .         :         .         .         .         .         6         .         .         .         .         :         .         .         .         .         7         .         .         .         .         :         .         .         .         .         8         .         .         .         .         :         .         .         .         .         9         .         .         .         .         :         .         .         .         .         0         .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         . ] 1472
1 Target                                              100.0% 100.0%    TGTTAGCTGGAATAGTATTCGAGAATGTGATCCCACTTACACGTCATCATCGATATCCACGTCGACAATTTTATATGCGCAGTTGTTGTCGCTGCGGTGGCAAGGTAAGAGTTAGGCCATGGACTAGAAAGTGCAAAGAAAAAGTTAGGCCATACATATGAAATTCTCGGAGAAATTTAGATCACGCTGGTGAAAGTTAGGCCACGGACTAGAAAGTTATCAGTAACAGTTAGGCCATGAGCCAGAAAGTTTCCAGAACCGCCCTAGAAAAGCTATTAAGGCTATCGACTAACAAATCCTAAAAGTAAATTAGGCCATGGCCTAGAATGTTCTAAAAAATTAGGCCGCCCTAATGATCATGTAAACCTAGGCCACCAAAAACAAAAATTTCCAGAGCACTGTGACGCTGACGTCATCTTCGTCTACATCCAAAGTTGGCAGCCCGAACGACTT-CGAACTCCGCTGCTCATTCCACTTTTCGGGTATTTCTAGGCCACCTATAG------------------------------------------TAAGAAAAATTATCAATCGAGTGCACTTGCAGAAACCAGTGGCCACATCTTCGCAGATTCTCCATCCCAATCGTCACGTCGGCCAGGGAGACGACGCTAACCTCGCTGGAAAACGCCATGTCACACGCCAGCCGACTAATCCACGTGGATTTGTCGCCGGTGAGCGATGGTGCAATCGCGC--------TCCAATGACAATGTTTGAAGTTTTCAGGCTCACGCGGCGATTCCACGTTGGGCTCTCGCGTTTGGTGGAATAATGCTGTCAGTTGTGGTCGCGGCGATGTACGTGGCAAATTGTATTAGTGAAAAAATGGGTCAAAGGGTAATTTAGAAGTCTTGG-----------GTTTTAAGCTAAAAATCGGAAT-TTCAGCGGCAAAAATCGCTGGTCCCAAAACGTGGAAACGAGAAGTTCCGGGCGGGATTCGGAGGCGGAGTGATGATGAATAGCTCGGGGAGCCAGAAGAAAAAGTCGGTGATGATGTTCCGGACGTTCTCAAAGAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
2 Caenorhabditis_remanei-NW_003319661.1-569302_568737  57.5%  39.5%    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAAAGTTACATCCTCCCGAACACTATTTTCAGAGTACTGCGACGCCGATGTCATATTCGTCTATATCCAAAGTTGGCAGACCGAGAGACTT-CGTACTCCTCTATTGATTCCATTATTTGGGTA-------------------------------------------ACCAGCAAACGCGCTCTATTGACAATTCTCAATTCCTTATATATTCCAGTGACCAATGGCCTCATCTCCGTCGATTCTCCATTCCAATCGTCACAACCGCTCGAGAGACCACTCTCATTTCTCTAGAAAACGCAATGTCCCACGCCAGTCGTCTTATCCACGTGGACTTATCACCAGTGAGTTTTCTAGGCCACGCTT--TGGGT---TCCTAGGCCATCGTTTTAGTTTCAGGCGCACGCTGCGATCCCTCGTTGGGCGCTGGCATTCGGTGGGATAATGTTGTCTATTGTGGCGGCGGCGATGTACGTGGCAAATTGTATCAGCCAAAAAATGGGACAA---------------------------------------------------------CGGCGACAAAAATCGTTGGTACCAAAACGTGGAAACGAGAAGTTCCGTGCCGGTTTTGGGGGCGGAGTCATGATGAACAACTCGGGAAGTCAGAAGAAGAAATCGGTGATGATGTTCAGAACGTTCTCGAAAAGTAATCATAATAACAATAATAATCGATTATAGTTTTGACTCGGGTTCTAAGAATAAATTATTTTTCTTCTCAATCTGTTTTCATATT--TATTTCCAGTTCGTTTAGAGCTTTCAGAAAAGAATAATCATGACTAGGTTTGAAGTGATTTGGGTCTCGACGCGAAATTTTAAAAATTTCGGG-TTACT---GTAGTTTTCGTGGTGAGACCCAACTTGCTTCAAACCTTGTCATGATTATACTTTTCTGAAAGCTCTCAGTGAGCTGAATCCGATGCTCCGTATCGTATGTCAATGACGACGCAGCCGATCCCAATTTCTACTTTGTTTCGAAACTAGCCTGATAACTTGGATAATTGAAAGAGCTCTCTGACAGGGTTACTGTAGGTGTTGGCATTCGTACCAATTCCAAA     
3 Caenorhabditis_briggsae-NC_013486.1-4255491_4254828  58.4%  40.3%    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGTCTACATTCAAAGTTGGCAAACCGAACGTCTT-CGAACGCCGCTTCTGATTCCTCTATTCGGGTATGCAAGTTTGCTTCATTGAAATTTTAAAAAGCTCTCTCAAAGAATTAGTCCAATAGAGTGCATTTTCTTCTAGCTAAAATTCAAATTTCCAGTGACCAATGGCCTCATCTCCGTCGATTTTCGATTCCTTTGGTGACGGCGGCAAGAGAAACTGCTCTGATTTCTCTTGAGAATGCAATGTCCCATGCAAGTCGTCTAATCCATGTAGATTTATCACCGGTAGGAGTTTTCTAGATTGTGGCCTAGCTTTTTCAACTAAATTTCAAACTTTTCCAGGCGCACGCTGCAATTCCTCGATGGGCTCTGGCTTTTGGTGGAATTATGCTCTCTATTGTCGCTGCGGCGATGTATGTAGCAAATTGTATAAGCCAGAAAATGGGACAAAGGGTTGGTTTTATCATTGGAGCGC-ATTTGACATAATTTTTCAAAAGTTTCCT-TTAAGCGCCAAAAATCGTTGGTTCCAAAGCGTGGAAACGAGAAGTTCCGTGCTGGATTCGGCGGTGGAGTGATGATGAACAATTCTGGAAGTCAGAAAAAGAAATCAGTCATGATGTTCCGGACTTTTTCGAAAAGTAACCATAATAACAATAATAATCGTTTATAGTCTCGAATTTTACTCTTTTTTTATTTCTCTTCCGGGTTCATACAATAAAGATTTGCTTTTTTCATGTCAATTTT------T-TCGATTAAAAATTCGGT----------------------TCAAGCCCTAAAATGCTGAAAATTTCTTT-TCTTTCTTTCAGATTTGAATAACCGCGCAAAGTTGCCT--GGCCGTGGCCTAACTTTTCTGTTGCAACGACACTCCGCGCATCCCGCCGCGCGTTGTTTAGCTGCCGTTTATTCCAAATATTTGCGTCCTAATTTTCTGATTTTCTCGCTCTTTTCAAGATTTTTATTGTTTTTTTCTTCGCTCACAACCTGAAATAAACACTTTGTAA--------------------     
4 Necator_americanus-NW_013561089.1-1075_989           70.2%  24.1%    ----------------------------------------------------------------AC-----------CGATTCCGAGCCGGCTTCGGTGGTGGAATGATGATGAATGCGTCAGCTCAA-----CAGAAACGAAG-------------------------------------------------------------------------------------TGTGATGATGTT-CCGCACGTTCTCAAAGGCCCCGAACAGAAGCGGTGGCGGA---------------------AGTAGATTGTGAGGTACAGAAGAAAGTCCTGCACACCAACGTCACGCTGGA--AGAATGAGAGCTTTCTTGCTGAATGTAGGAGTGATCCCATGCCTTTGAC---GATCTCACTCATTTTTTTTTTCAACTTTCACTCATCGGAAACTTTTAATCTCCCTCTCCTC-----ACTTATTGGGTATCTC---------TATGCAGAGTTAATTCCGCAATAAGAAATAAGTGGAACA-----------AATATTGTAGTTGGAATTTTATCTATAAGAGGCTTA---TTTTTTCTTTGTCGCTTTTTCCAATTATACGTAAAACG---------TTCTACAGTGTATTTTGCAGATGTACAACTTTATGAGAAAAGTATTTTAATAGTTAGGGTTTATTCGCTGTTGT-TGCTCAAC------------------------------------------GAACACAAAGTTCGAATTAAAGCTATAATAAAGAATTCATTTATGTATAGTTC---------TATCAAGGGAAATACATAGAGAATTGATGAAAATATGAATGG-------------TTTCTGAAGCAACAGAAACTTTTCCGAACATATCTAAATTACTTGTTTATTTCATGGGAAAATCTGTTCTCAAAGAACTAAAAAAAACAAGCGTTGGA--------------------AATGACGAACAGTGCTTTGTGGTTACGAGATAAATCATTTTTAAAACTCAAAAATGTCGCTGAAAAACGCTTTAATCGCAGGAAAAATTGGTTTACGAAAACCGATGTGCGGGT-TAATAATCAACCTTATTCTTCAAAATATATAGAT--ACTTCCTCCAAGGTTTCTTT----------------------C--------CATCACGAAGTTAATCTGCCGCCATCGCCATCTAAAAATATTTTCATGCATTCTGAAGATTGGACCGCTCTACAGAGAGTGC------CCGTAGCTTCCATTTGATCATGA-------GTAAAGGTCCGAAATCGGAAAGTATTCACAGTACTCGAAGGTCGA----------------------------------------------------------------------------------------------------------------     
  clustal                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                :  * *: :* ***. ** .*: . **....  ** ..:.  ** **  *      : *::* *****                                                                : .::  :  :  . :   .: *: .**:..* :.     : :***  * .*.** *  .:   ::: ** *..            :* .*  * :  *     ** .:  ...* *.  * ...** . : *:**. : . .*: *: **.* . *.     *                                              ...* **..   *.*:  .:.* *. .. .: *. ** . * . .*:::* *              ..* **:.** .*.*..*****::  *.  * .**: *                                                                  .   .******  *  * ..*.*.* :..***....*.  *  *                      **** *** *.  *   .:*  :.....* **.**. * :*.*:. **...*.  *  * .*.*.:.

Job