Reference sequence (1): Target
Identities normalised by aligned length.
Colored by: consensus/70%

                                                              cov    pid  1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .         .         .         .         :         .         .         .         .         6         .         .         .         .         :         .         .         .         .         7         .         .         .         .         :         .         .         .         .         8         .         .         .         .         :         .         .         .         .         9         .         .         .         .         :         .         .         .         .         0         .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .         .         .         .         :         .         .         .         .         6         .         .         .         .         :       ] 1658
 1 Target                                                  100.0% 100.0%    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCTCTTCCAGGAAGGCCTTCTGG-GAC----------------CACCAGGGGCTGTCCCGGCCTCCCTGCCTGGTTCAAGGCTAGACTCACCTTG----TCCCT--GT----------CTCTCCCCTGGACTCAGAGCAAG--GCTGAAGAGGACGTGGAGTCTGGGGAGGATG--------CCGGGGCCAGCAGACGCAATGGCCGCCTCGTCGTGGGAAGCTTCTCCAGGCGCAAGGTCCGGCGCAGCTCCCAGGCCAGGGTCCCGGTCTGGGCCCAGTGTCCTCCCTGCTCCCAGTGCCCCGTGTCCTCCCTGCTCCCAGTGCCCCG--TGTCCTCCCTGCTCCCAGTGCCCCAGTGGGCCCTGCCCCAGCCAGAGCAGATGGGGGTCTCCTCCAGTCCCCAGGGTTCCCAGCCTGGCTCACAGGATCCCCT---CTGAGTCAGGCCGAGC-TATCGGTTGCAGGTGCCAGGGA---CTGGGCCAGAAGC-CTGGGCTCGGAGCTGGT-GGGAACAGGTGCCTGGCTG------GCTCACATCCCTTCTCTGGCCCACGCTGGCCCTCGCCCCAAGCTCAGGTGCCTTGTGGCTGCCCTGAGAGTCTGCCAGA-GCCCAGATCGAGAGGGCACCGAGGAGGCTTTGGCAGGCCCAGCCAGGCGGGATGGACATGGGAGGCTGCGTGGGCCGCTGGGGACCCCGGAGGATAGGCCCTCCCCAACCCCCCA-GCCT-TCGCCAAGGCCT------GGCCTGGGCCAGAGGCCCTACAG-CTCACACCTCTGCCCCCCGCACAGAAGAAGGGCAGCAAGCTGAAGAAGGCGGCCAGCGTGGAGGAGGGAGATGAGGGTCAGGACTCCCCGGGAGGCCAGAGCCGAGGGTAGGTGCCCTGCCCCACGGGGAGGCCCCGCACACT------CCTGGGAGCCTGGCCCAACCGGGCC-CTTCTCTGCGGTGACCCCACC-AGGACCATCCC---TGAGCAGGG--CAG------------GACCTACCCCCT------------TCTTGGCCCCTGGAAGCAGTGAAG--TGGTAGGGAGTGTGG----T-GTGC---AG------GGCAG-----GCTGGTGGCTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
 2 Theropithecus_gelada-NC_037668.1-219934_220873           93.9%  80.4%    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTGCCTTACTTCAGACCTGGCTCAAGCCCACCTCCTCCAGGAAGGCCTCCTGTGGCG----------------ACCAGGGAGCTGTCCCGGCCTCCCTGCCTGGTTCAAGGCTGGGCTCACCGTG----TCCCT--GT----------CTCTCCCTTGGACTCAGAGCAAG--GCTGAAGAGGACGTGGAGTCTGGGGAGGATG--------CCGGGGCCAGCAGACGCAACGGCCGCCTCGTCGTGGGAAGCTTCTCCAGGCGCAAGGTCCGGCGCAGCTCCCAGGCCAGGGTCCCTGTCTGGGCCCAGTGTTCTCCCTGCTCCCAGTGCCCCAGTGGGC----------------------------------------------------CCTGCCCCAGCCC----------CCAGGGTTCCCAGCCCCCAGGGTTCCCAGCCTGGCTTGCAGGATCCCTT---CTGAGTCGGGCTGAGC-TATCGGCTGCAGGTGCCAGGGA---CTGGGCCAGGAGC-CTGGGCTCGGAGTTGGT-GGGAACAGGTGCCTCGCTG------GCTCACATCCCTTCTCTGGCCCACGCTGGCCCTTGTCCCAAGCTCAGGTGCCCTGTGGCTGCCCTGGGTGTCCGCCGGA-GCCCAGATTGGGAGGGCACCGAGGAGGCTTTGGCAGGCCCAGCCAGGTGGGATGGACATGGGAGGCTGCGTGGGCCACTGGGGACCCTGGAGGACAGGCCCTCCCCAACCC-CCT-ACCT-TCGCCAAGGCCT------GACCTGGGCCAGGGGCCCTACAG-CTCATGCCTCTGCCCCCCGCACAGAAGAAGGGCAGCAAGCTGAAGAAGGCGGCCAGCATGGAGGAGGGAGATGAGGGCCAGGACTCCCCGGGAGGTCAGAGCCGAGGGTAGGTGCCCTGCCCCATGGGGAGGCCCTGTACACT------CCTGGGAGCCTGGCCCAGCCAGCCC-CTTCTCTGCGGTGACCCCACC-AGGGACAACCC---CGAGCCGGG--CAG------------GACCCACCCACT------------TCTTGGCCCCTGGAAGCAGTGGGAAGTGGTGGGGAGTGTGG----T-GTGC---AG------GGCAG-----GCTGGTGGCTGCCAGCAGTG--GGG-GCAGGG-----G----------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCCGAGCAGG-----------------------------------------     
 3 Saimiri_boliviensis-NW_024100927.1-199862_200758         92.6%  71.5%    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------CCCTGCCTTTCCGCCCCCCAGGCCTCGCTTGAGTCCACCTCTTGCAGGAAGGCCTCCTAGGGCC----------------ACGAGGGAGCTGCCCCGGCCTCCCTGCGGGGTTCGAGGCTGGGCTCACCCTG----TCCCT--GT----------CTCTCCCTTGGACTCAGAGCAAG--GCTGAAGAGGACGCGGAGTCTGGGGAGGACG--------CTGGGGCCAGCAGACGCAACAGCCGCCTCGTCATGGGAAGCTTCTCCAGGCGCAAGGTCCTGCGCAGCTCCCAGCCCAGGGTCCCCGTCTGGGCTCAGCGTCCTCCATGCTCCCAGTGCCCCAGCGACC----------------------------------------------------CCTGCCCCAGCCAGAGCAGATGGGGGTCTCCTACAGCCCCCAGGATTCCC-------------------TCT---GAGTCTTGGGCTGAGC-GGTCGGCTGCAGGTGCCAGTGG---CTGGGCCAGGAGC-CTGGGCTGGGAGCTGGT-GGGAGCAGGGGTCTTGCTG------GCTCA-TTCCCTCCTCTGGCCCTCACTGGCCCTCACCCCAAGCTCAGGTGACCTGTGGCCGCCCTGAGAGTCCGCTGGA-GCCCAGGTCGAGAGGGCACTGAGGAGGCCTTGGCAGGCACAGCCAGGCGGGAGGGACATGGGAGGCCGTGTTGGCCTCGGGGGACCCTGAGGCCAGGCCCT-CCCTA--ACCCCC-AGCC-TTCCCCAAGCCT------GGCCTGGGCCACGGGCCCCACAG-CTCACGCCTCTGCCCCCTGCACAGAAGAAGGGCAGCAAGCTGAAGAAGGCGGCCAGCGTGGAGGAGGGGGACGAGGGCCAAGGCTCCCCGGGAGGCCAGAGCCGCGGGTAGGTGCCCTGCCCCAGGGG-AGGCCCTGCATGCT------CCCGGGGGCCTTGGCCAGCTGGCCC-CTTCTTTGCGGTGACCCCATC-ATGGCCATCCT---TGAGCTGGG--CAG------------GACCCAGCCCTT------------TCCTGGCCCCTGGAAGCAGTGAGAAGTGCTGGGGGTGCTGC----C-GGGC---CG------TCGGT-----CTCAGTCCTCAGCTCC-TTC--TCC-TCCGAG-----G----------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCAGCCTCATGCCTTG----------------------------------     
 4 Callithrix_jacchus-NC_048389.1-199833_200731             90.7%  69.0%    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCTGGC-C----------------CCACCCTGCCTTTCTGCCCCCAGGCCTTTCAAGTCCACCTCTTGCAGGAAGGCCTCCTGGGGCC----------------ACCAGGGAGCTGCCCCAGCCTCCCTGCCGGGTTCAAGGCTGGGCTCACCCTG----TCCCT--GT----------CTCTCCCTTGGACTCAGAGTAAG--GCTGAAGAGGACGTGGAATCTGGGGAGTACG--------CTGGGGCCAGCAGACGCAACAGCCGCCTTGTCGTGGGAAACTTCTCTAGGCGCAAGGTCTGGTGCAGCTCCCAGCCCAGGGTCCCCGTCTGGGCCCAGCGTCCTTACTGCTCTTAGTGCCCCAGCGGCC----------------------------------------------------CCTGCCCCAGCCAGAGCAGATGGGGGTCTCCTACAGCCCCCAGGGTTCCCGGCCTGGCTTGCAGGATCCCCTC-TGAGTCTTGGGCTGAGC-GGCCGGCTGCAGGTGCCAGTGG---CTGGGCCAGGAGC-CTGGGCTGGAAGCTGGT-GGGAGCAGGCGTCTTCCTG------GCTCATTCCCGCC-----------TCTGGCCCTCACCCCAAGCTCAGGTGCCCT-------------GTGGCCGCCGGA-GCCCAGGTCGAGAGGGCACTGAGGAGGCCTTGGCAGGCAGAGCTAGGCGGGATGGACATGGGAGGCCTCGGGGGACCCT----------GAGGACAGGCCCTTCCTAACCCCCCA-GACT-TCCCCAAGGCCT------GTCCTGGGCCAGGGGCCCCACAG-CTCATGCCTCTGCCTCCTGCACAGAAGAAGGGCAGCAAGCTGAAGAAGGCAGCCAGCGTGGACGA---------GGGCCAGGACTCCCCGGGAGGCCAGAGCCGAGGGTAGGTGCCCTGCCCCATGGGGAGGCCCTGCACGCT------CTTGGGGGCCTCGCCTAGCTGGCCC-CTTCTTTGTGGTGACCCCATC-ATGGCCATCCT---TGAGCTGGG--CAG------------GACCCACCCCTT------------TCCCGGCCCCTGGAAGCAGTGGGAAGTGGTGGGGGTGTGGT----G-TGTG---GG------GCAGG-----GCGGCCACATGCCTGGGCAA--CTC-GGGGGC-----C----------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTTGGACCCCTGGCCTCCT---------------------CTCCA------     
 5 Marmota_monax-NW_025724459.1-184768_185021               74.4%  33.3%    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGCCTCTTCCAGGCAGGCTTCCAGGGCTG-------------------------CAGGGACCTGCCCGGCAGGTGTCGTCCTGGTTTGAGGCCAGGCTCACCCTCT--GT----------CTCTCCCTTGGGGTCAGAGCAAG--GCCGAGGAGGACATGGAGTCTGGGGAGGACG--------CCGGGGCCAGCAGACGGAACCACCGCCTCCTCATGAGCAGCTTCTCCAAGCGCAAGGTCCAGCGAGGCTCCTGGGCTGGGGTCCCTGTCCGAGCCCACTGTCCTGCCTGCAC-CAGGTGCTGGCTGTGGCTGGCCT-CAGGAGCCCAG-------GGGCAGGGGCTGGTCTGGGGCAGGTGCCTTGG-------------C------------------------------------------------------------------------------------------------------------------------------------------------------CCTTGGGTCACTGCACTCCTCTGGCCCCACTGACTGCTGTCCTGAG----AG-CCC-----GCTGGAG--------CTGGGCGGCCTGGGCACTGCAGACCCTGGGAGAGGCCTG---------------GCAGGCTGGGGCTGCCGGG---------AGCCCAGGGCAGGCCCTCCACGCA------------------CCCTCCAGCCTTTGCCCATGGCCTGGCCTGACCTAGGGCTCCACGGGTCATGACTCTGCCCCCCTGCACAGAAAAAGGGCAGCAAACTAAAGAAGGCAGCCAGCCTGGAGGAGGGGCGCGAGGACCTGGACTCCCCAGCAAGCCAGAGCCGAGGGTCAGTGCAGTCCTGAGGACCTGACGGCTGCGGGC-----------CCCTCTCTGTCCCCGCAGGGCGGTTTC--------------ACTGAGGCTGTCCTCTGAGTGCAGTGGGACG---GGGGCAGGTGTGGGGTCCCCCTCCCAGCCCCATCTGATGCCCGTGGAAGCAGCAGGG-GATG---------AG----GCTGTTCTGCAGACCAC-AGCCAAGT-GGGACGGGCGGACCAGCGCGGTGACC-CCAGAGAGTCTAGCAGGGT------------TG---GGCTGGGA--CGT----------GGCAGGGGCCAGGAGGAGCAGCATGACTCTGAGGACCCCAGGATCTCCCAGGCCCAGACCC---TGCTCTGCCCACCAATCCC---ACCTCCCTCCTCCTGAGG----------GCTCCCCCTCGTGCTCTCCC-CAGGGAGGGTGTCCGTGCCAGGCCTCAGAGG     
 6 Tupaia_chinensis-NW_006198262.1-200133_200414            89.9%  52.7%    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGCCTTCCTCTTGGAACTGGCTTAATTTCGCCTCTTCTAGGAAGGCCTCCTGGGGCCACTAGGGGGTGGGGGTGGGGGTGGGGTGTCCCGCCCTCACTGCCTGATTTGAGGCTGGGCTCATCCTGTCACTCTCT--GT----------CTCTCCCTTGGCATCAGAGCAAG--ACGGAGGAGGACGTGGAGTCTGGGGAGGACG--------CGGGAGCCAGCAGACGGAACAGCCGCCTCCTAATGAGCAGCTTCTCCAAGCGCAAGGTCCAGCAGGGCTCCTGGCCTAGGGGGCCCTATCTGGGAGGGCCCAGTCTGAGCCCACCGTCCTCCTAGCCCTCTGTGCACCAGCCAGGGG---------------------------------------------------------AGGGTTTCTGTAGGCCCTCGGAGCCCCTGCCTGGCTCCCAGACTCTTCCCTTGAGTCTTAGGCTATGTCGTCTGGCTACAGGTGGAGCTGTGTCTGGGGTCAGGGTC-TCAGGGTCGAGGCTTGTCTGGAACAGGTGCCTGATGGTGCTCTGGCCCCTGCCCTGTGCTGGCCCAAGCTGGCCAGGAT---------------CCTGGAGCTGTCCCAACAGTCCGTGGAGGCCCAGGCCAGGCAGGGCACTGCAGAGGCTTCAGCAGGCCCAGCAGGGCAAGGTGGCCCTGAGAGGACGAATGGGCTGAAGACCCAG--GAGGGCAGGGCCCTCCCCACATCCTCTGACCTCTGCCAATGGCCTGGCTTGAGTGGGGGTCGGGGGCTCCGCAGGTCACAACTCTGCTCTCCTGCACAGAAAAAGGGCAGCAAGCTAAAGAAGGTGGCCAGCGTGGAGGAGGGGGACGAGGACCTGGATTCCCCAGGAAGCCAGAGCCGAGGGTCAGTGCCTTGCCCCCACTGGGAGGAAAGGCCCTGCACAGGCCTGAGGGGCTCGCTGACTGTGGCCCCCACACTATT------CTCTA-AGGGTGATTCTGTGTGGGAGGGGTAAGG------------GTTCCACCCCTAGGCCCACCCTGGGCCCCCTCTCTGCACCCTGTGGGAGACAATGGGGAGTAAAG----C-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
 7 Carlito_syrichta-NW_007256000.1-152099_152353            79.3%  35.5%    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTTCCAGGAAGACCTCCTGGGGCCACTGGGG------------AAGCTGTCCCGGCCTCCCAGTTTCTGCCTGTCCTAAGCCTGGACTCACCCTGTCTCCC--GT----------TCTCTCCACTGGGTCAGACCAAG--GCCGAGGACGACGTGGAGTCTGTTGAGGACG--------CCGGGGCCAGCAGACGCAACAGCCGGCTTCTCAAGGGCAGCTTGTCCAGGCGCAAGGTCCAGTGGGGTACCTGACTGGGGGCCGATCTGAGCCCGCTGTCCCCCCGTCCCAGCCAGAGAGGAGGGGTCTCCTGCAGCCCCGGGCCCTGGCTCAGGGTGCAGGGTCCCCTTTGAG-GCCTTGGCTGTGC----------TGCTGGCTGGGGC------------------------------------------------------------------------------------------------------------------TGGTAGGGAGCCGGTGTCC--CTGGGCCACTGGTCACCGCCCACCGTGGCCCACGCTGACCAATACCCCAAGCTCAGGTGCCCTGAGGCTGCCCTAAGA----------------------------------GTCCACTGGGCCC--------AGACCCAGAGGGCACCTCAGA---------GGCCTTGGCAGGCCCGGCCAGTAGAACCCCAGAGG-------ACAGGCCGCCTGGGCCCTCCCAGCCTTTGCCGGTGCCCTGGCCAGGTTCATAGCTCTGTTCTCTCACACAGAAAAAGAGCAGCAAGCTGAAGAAGGTGACCAGCGCGGAGGAGGGGGATGAGGACCTGGATTCCCCGGGAGGCCCTAGCCGAGGGTCAGTGCCCTGTCGCCGGGTGGGGGCAGGCTCTTAAGATCCCGGGCCCTGGCGCCAGATGTGGTGCCCACCTCC---------------CTCCCTGGACACGCAGGAC--TGAGG---------AGCGGGTGTGGG-CCCATCCCCATCCTGGATC-----CTGGGGAGACCAAGTGAAGCG--AGGCCGCTGT------CCTCAGGCAGCAGC-GGAAAGGG-GGTGTGTGCCGAGCTGCGCAG----------------CGGTCTGGT---------------CAGCCGGGGA--CGGGGTGGACCGAGAGCCCCAGCTTCTCAAGGCCCAGACACCA-----------TTGAGCCTCAGGCCTCAGGC---TTCACCGCTG--CCTTCTG---AGTCC-------------------------CCAGCCTCATGCCCTCCC-AAGGGGCT-----------------------     
 8 Lemur_catta-NC_059130.1-185548_185699                    69.5%  29.1%    GGGGTGCTCGTGAAAGGGCCGCAGAAG---------------TAGGCTGAGGAATGTTCCAGACACACATAATGCATTTATTACGCAGTCACCATCTGTGGGAAAACTCAGAACCGGGGACTTAATGAGTGTAGAACAACACGTGGTGA--GAGGCCAGCGTGG------GTGTGAG-----TGGCTGTTC---CCACCGGGCTCAGCCTGTCCCCCCAAG-GGCAGCTCTGGGCCCGGGCGCCCGACTGGGCTCCCGCCTGCCCGCCCTCCGCCCGGGCGTGGCTCCAGCCCACCTCTTCCAGGAAGGCCACTGGGCAGC----------------TGGGGGAG------------TATCCGCCCTCCCTGAGCTCACGCTGGCCTCACCCTCGCCC--TG----------TCTCTCCCGCGGGTCAGAGCAAG--GCGGAGGAGGACGCGGAGCCCGGGGAGGACG--------TCGGTGCTGGCAGGCGCAACAGCAGCCTCCTCGCGAGCAGCTTCTCCAGGCGCAAGGTGCAGCGGGGCTCCCGGCCCCACCC-----------------------------------------------CCACCGGCCA----GACA---------GCAGGG--GC--CTCCCG----------CCC--------------------------------------------------------------------------CCAGGCCCTGG----------------------------------CCGGC-CCCTAGTCGGGAGTGG-----------CGACTCCACG-------------GCCCTCTGGTCACCTCTCCTCTGGCCCACACTGGCCAG---------------------GTC-CCCACAGCTGCCCAGAGGACACGGCC-GCAGCCGCAGTGTG------CCCAGCAG--------------GGGGGA---------CGA---GGAGG----CCGTGCGGCTGCTCGGGAGCCCTCCCCGCCT----CTG----------CCCTGGCCTGGCCCGCGTGGGCCCACGGCTCACAGCTCTGCCCTCCACAGAAAAAGGGCGGCAAGCTGAAGAAGGTGGCCAGCGTGGAGGAGGGGGACGAGGACCTGGACTCCCCGGAACGCCAGAGCCGAGGGTCAGTGCCCTGCCCCAGGGACAGAGTGGTCCCACCGGCACCGACCCCTCTCCCAG-C--CCCTCCTCCCACTGGCCA-----GAGG---ACCACTCTGCTCTCTGTGCACCCCCCAT----GA-----------CCCCGCGGCCCCCTGC---CTCTTCTCCACTCACCCAGACTTCACCCC--GAGTCTCCTCCTGCTCAGAACCTTCCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
 9 Rattus_norvegicus-NC_051340.1-186148_186370              73.0%  29.7%    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTACCTCCTGCAGAAAGGCCTTCTGGGG------------------------CCACCAGGGAGCTGTCCTGCCTTCCTTGCCTGGTTGGAGGTTGGATTCAACTTCT--GT----------CTGTCTCTCAGGCTCAGAGCAAG--GCCGAGGAAGATGTGGAGTCTGGGGAGGACA--------CCGGGGTGAGCAGGCGGAACAGCCGTCTCCTCATGAGCAGCTTCTCCAAGCGTAAGGTGAGGAGAGGTCCTGGGCTCAGGGGTCCCATGCAGTTCTGCCGTCATCCCTGTAC-CATTCTCTATCTGTGGTTGGGGTCAGGTTCCCAAG---------GCAGGAGCTCTGGCTACTGCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTTGACCCACACTGGCCAGTGTCTG--AGATTCAGACACAGGGAGTCCCGAGAGT-CA-CCCAGGGC----------CAGGGCACCGCCAATACCTCTGTGG------GCCAATTGGGTAGGA-ACTCAGG---------AACCTGGGC--------AGATAGCCCCTACCCTGC-------ACCTCCTGGCCTTTTACATGTCCTAGTTTGATCT-----CAGGTCA----CAATTCCACTTCCCCACACAGAAAAAAGGCAGCAAGATAAAGAAGGTGGCCAGCGTGGAGGAGGGGGATGAGAGCCTGGACTCCCCAGGAAGCCAGAGCCGTGGGTCAGTGCCCTGCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG------------------TGTGTGCGCACGTGCGTGTGTGTGTGACCCCT-GCCCAGTCCCA--GGGAGCTGTCTCTGAGTGCTGAGCAGAGATGGGTGACTG----G-------TATGGGAATCCAGGTCCCACC--CCTACCCTGAA--CA-CTTAAGCTGGTAATGGGAAAGTG-GAGCTGTCCAGGCAGCAGCAGAAAGC-ACAGCGTGAGCCCAGCAGT------------GC---TCAGGTTC--TGAGCAGCTACAGGCAGCAGGGCTCCTGAGGGTCCCTCAGTTTCCTGGATGTAGGCACTAGC--CGACTAACCA--GACCTCAGCTCCCACCTCCTCTTCCAAAGCC---TTCCCTCTGCCCC---CCCCCCCGTTTTACATTTCCTCCAGGGGTAGCGTCTGTCTGTCTATCTC----     
10 Chinchilla_lanigera-NW_004955486.1-185359_185528         70.5%  29.1%    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTCGCCCCGCCCTCCCTAGCTGGGCTCAAG-------------------------------CCCACTCTTCAAGGAAGCCTCGAGGCTGCGGGGGGCACCAGTCTCATCCTT--AC----------CTGTCTCCCTTGGGCAGAGCAAA--GCTGAGGAGGACGTGGAGCCTGGGGAGGACG--------CCGGGGCCAGCAGACGCAACAGCCGCCTCCTCATGAGTAGCTTCTCCAAGCGCAAGGTCCGGCCCCGGTCCCAGACTGGGGGCCCTGTGTGGGGACCCCGCAGAGCCCACCCTACTCCCCAAA---------------------CCAG-------GTGCTAGCGGGCTCTGGGGTCAGATGCCTCGGC----------GGC------------------------------------------------------------------------------------------------------------------------------------------------------CCCCTCTGGC-------------------CTGGCCGGTGCCTGAGCTCA-GACACCCTATGGCTGCCCCAAGTTGCCAGG---GC-----CTGGGCAGAGCCAAGCGGCTGG------------------GCAGGAAGGGT-TTGCAGG---------CTGTGTGGGCTGCT-G-----------------------------------GGAACCCAGAGGGCCCAGCTGAATGAGGGCCCCGCAGGTCATAGCTCTGTCCTCCGGCACAGAGAAAGGGCAACAAGCTAAAGAAGGTGTCCAGCATGGAGGAGGGGGACGAGGACCCGGACTCACCAGGAAGCCAGAGCCGAGGGTCAGTGGCCTGAAGGGGCGGGGGCATCACCCTGGGGTCCTCGGGGCGGTGGCCCCACGCCCTTCCCTGAGTG----------ACCCAC-TGGGCTGTCCCCAGACACCAGGCAGGACCTCAAGGCAGCCGTGGGAAGGAAGCTGCTGTC----------CAGGCGGCAGCAGCGGTGGGATGTGTGGGTGGGCAC--GGGCAGCCTGGCAGGAT-GGACACTG-GGGCAGGGTCGGCCAGGGCAGCACAC-ACCAGGCCTTGGTGCCCCTCCCCCTCCCC--AGTGCTGCTTGTT--CCTGGTGATGGGGGTTCCCTGCGATAGAAGTTCCCATGTCCCACGGGGCTGGCACTGGTCCCTGGGACACCTCGGGTTTCGTGGCGGCCTCCTCTG---CCTGAGCCCATCTCTCTCCTCCCAGGGCTCTCCCCTGTGTGCCCTA---TCCGGGTCCTGTTCCTCCCCCGTCACAC---     
11 Castor_canadensis-NW_017871110.1-184038_184286           77.7%  33.4%    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGCCACCTCTTCCTGGAAGACCTTT----GGG-------------------------GGCTGTCCTGCCCTCTCTGCCTGGTCCAAGTCTGGGCTCACCTTCTGAGCCT--GT----------GTTTCCCTCAGGGTCAGAGCAAG--GCTGAGGAGGGCGTGGAGTCCGGGGAGGAGG--------CTGGGGCCAGCAGTCGGAACAACCGTCTTCTTATGAGCAGCTTCTCCAAGCGCAAGGTGAGTGGAGCCCCTCAGCTGG---GTGCCGTTTATGTCCACTGTCCTTCCTGCAC-CAGGTGCTAGCTGTGGCTGGGGT-CGGGAGCCCAG-------GGGCAGGGCTGCTCAGGAG-CAAGTGCCTTGAG----------GGC------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTGGTCACTGCCTTCCCTAGCCTCCACTGGCTGATGCCAGAGCTCAGGT-ACCACATGGCTGTCCCGAGAGTACACCAGGGTCAGGGTGGAGCAGGACACAGCAGAGGCCTCTGCAGGTTCAGCTGGGCAGGGTGGGCCTGGTAGG---------CCGTGTGGACTGCCTGAGAACTCA-GGTAGGTGGC-------CCCTGCCCTGCACCCTCCTGGCCTGTGCCATGGCCTGGCTTGACTCCATGAATCACGGCTATTCTGTACAGAAAAAGGGCAGCAAACTAAAGAAGGCGGCCAG-----TGGGAGGGGACGAGGACCTGGACTCCCCAGGAAGCCAGAGCCGAGGGTCAGTTCCCTGCCCTATTTGGGGGTCCCTGCTCAGTCTTGGGGGCCTGTCAATCATGGACTCACCCCCTTTCTCTAAGGGTGACTCTGGGAGGCTGTCCCCTGAGTGCTGGGCAGGC--------------------------------------------CTGGGAGCAGGCATGG-GTCC---------ACT---CCCTTTATTCTGAACAC-TGAAGGAA-GCAGAGGGGACTGAAGCTAGCGAACA-GTGGGGCAAGGGGTGCTGT------------AG---ACCTGTGT--GGT----------GGCTTAGACAAACAGGACTGGCACA---CT------------GGGGCAGGGGTCCTGATAC---TGCTTGGCCTACTAGTCTT---AGTTCCCACCTCCTCCTGTCCTCAAGGCCCCCAGCCTCATGAGCTTCC-CAAGAGTCACATCTG----------------     
12 Propithecus_coquereli-NW_012152752.1-186991_187153       73.3%  31.1%    ----------------GGCCGCAGAAA---------------TAGGCTGAGGAATGTTCCAGACAC--ACAATATATTTATTATGCAGTCACCATCTGTGGGAAAACTCAGAAC-GGGAACTTAATGAGTTTGGAACAATACGCCGTGA--GAGGCCAGCGTGG------GTGTGGG-----CGGCTGTTC---CTGCCGGGCTCAGCCTGTCCCCCTGCG-GTCGCCCCTGGGCCCCCGGTG-------------------CCCGACCTCCGCCCAGGCCTGGCTTC-AGCCCCCCCTTCCAGGAAGGCCGCTGGGTGGC----------------CGGGGGAG------------CGTCTGCCCTCCCTGCGCTCACGCTGGCCTCACCGTCCCCG--T------------CTCTCCCCTGCGTCAGAGCAAG--GCGGAGGAGGACGCGGAGCCCGGGGAGGACG--------CCGGGGCCGGCCAGCGCAGCAACAGTCTCCGCGCGAGCAGCTTCTCCAGGCGCAAGGTGCAGGAGCGCTCCCGGCCGGCCGGGGCCTGTCTGAGCCCCGCCCCCACCACCACTCACCA-----GCGTCCCCCACCACCA----GGGA---------GCAGGG--CC--CTCCCG----------CTC--------------------------------------------------------------------------CCAGGCCCTGG----------------------------------CCGGC-CCCTGGTCGGGAGTGG-----------CACCTCCACG-------------GCCCTCCGGTCACCCCCTGTCTGGCCCACACTGGCCTG---------------------GTC-CCCAC-GCTGCCCAGAGGGCACGGCC-GCAGCCTTGGTGCA------CCCAGCGG--------------GGTGGA---------CTA---GGAGG----CTGTGCGGCCGCTTGGG-ACCCTCTCAGCCT----CTG----------CCCGGGCCTGGCCCAGGCGGGCCTGCGGCTCACGGCTCTGCCCTCCGCAGAAAAAGGGCGGCAAGCTAAAGAAGGCGGCCAGCGTGGAGGAGAGGGACGAGGACCTGGACTCCCCAGAGCGCCAGAGCCGAGGGTCAGTGCCCTGCCCCGGGGACGGTCCTGGGGTCCGCGCCGTCCCTCGCCCTTCTCCA--GAGTGGATCCACCG--CC-----AGCT---GCCGCTCTGCCCTCCGTGCACACCCGAC----GGCCCCTCGGC--CCCTCTGTGCCCGCGC---CTCTTCTCTCCGGACCCAGACTTCACCCT--GAGTCTCCCCCCTGCTCAGAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
13 Grammomys_surdaster-NW_021620991.1-185701_185895         75.4%  29.9%    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTACCTCCTCCAGAAAGGCCTTCTGGGG------------------------CCACCAGGGAGCTGTCCTGTCTTGCTTGCATGGTTGGAGGTTGGGTTCAACTTCT--AT----------CTGTCTCTCAGGGTCAGAGCAAG--GTTGAGGAAGACGTGGAGTCCGGGGAGGACA--------CTGGGTCGAGCAGGCGGAACAGCCGTCTCCTCATGAGCAGTTTCTCCAAGCGCAAGGTGAGTAGAGGTCCTGGCCTCAGGGGTCCCATGTAGTTCTGCCATCATCCCTGTAC-CATTTGCTAGCTGTGGTTGGGGCCAGGTTCCCAAA---------GTAGGAGTTCTGGCTACTACCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTTGACCCACACTGGCCACAGTGTCTGAGATTCAGACACTGAAAGTCCTGAGAGT-CCCCCCTGAGC----------CAGGGCATTTCAGATACCTCTGTGG------GCCAATTGGGTAAGG-ATTCAGG---------AACCTGGGC--------AAATAGCCCTTACGCTGT-------TCCTCCCGGCCTTTTACATGTCCTGGTTTGATCT-----GAGGTCCACAAAAATTCCACTTCCCTACACAGAAAAAAGGCAGCAAGATAAAGAAGGTGGCCAGCGTGGAAGAGGGGGATGAGAACCTGGACTCCCCAGGAAGCCAGAGCCGAGGGTCAGTGCCCTGCCCAGTGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCACGCCCACATGCACGTGTATGTGCGTGAGCCCT-GCCCAGTCCAA--GGGGGCTGTCCCTGAGTGTTGAGCAGAGATGGGTGGTTG----G-------TATGGGAATCCATGCCCCACT--CGTACCCTGAA--CA-CTTAAGCAGGTAATGAGAAAGTG-GAGTTGTCCAGGCAGCAGCAGAAAGC-ACAGGGCAAGCCTAGCAGT------------GC---TCAGATAC--TAGGCTAGTAGGGCTCCTGAGGG-------TCCCTCAGAGTCTCCTGGGTATAAACACTGCC--TGACTAACCA--GACCTCAGCTCCCACCTCCTCTTCCACAGGG---CCCCAGTTTCCTC---CAG----------------------GGGTAGCATCTGTTTATCTCTGTGCCT-     
14 Microcebus_murinus-NC_033661.1-185249_185480             75.3%  30.0%    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCCACCTCCTCCAGGGAGGCCGCTGGGCGGC----------------TGGGGGAG------------CGTCCGCCCTCCCGGGGCTCACGCTGGCCTCACCGTCACCC--TG----------TCTCTCCCCCGGGCCAGAGCAAG--GCGGAGGAGGACGCAGAGACTGGGGAGGACA--------TCGGTGCCGGCAGGCGCAACAGCAGCCTCCTCGCGAGCAGCTTCTCCAGGCGCAAGGTCCGGTGGGGATCCCGGGCTGGGGACCT--GTCTGAGCCCCGTCCGTCACCCACCTGCCAG-----CAGCCCCCACCGGCCA----GAGA---------GCAGGG--GC--CGCCCG----------TCC--------------------------------------------------------------------------CCAGGCCCTGG----------------------------------CCAGT-CCCTAGTCTGGAGTGGG----------CACCCCCACG-------------GCCCTCCGGTCACCCCCTCTCCAGCCCATACTGGCCCG---------------------GTC-CCCACAGCTGCCCAGAGGGCCATGGCCACAGCCTCAGTGCA------CCCAGCGG--------------AGGGGT---------GGACAAGGAGG----CCACGCAGCCACTGGGG-ACCCT-----CCC----AGC----------CTCCGCCCTGCCCTGCTCGGGCCCACGGCTCAGGGCTCTGCCCTCCGCAGAAAAAGGGCGTCAAGCTGAAGAAGGCGGCCAGCGTGGAGGAGGGGGACGAGGACCTGGACTCCCCGGAGCGCCAGAGCCGAGGGTCAGTGCCCCAGGACTGTCCCCGGGGTCCTCGCCGCCCCAC-----GCCCTTCTCTA--G-AGTGTCCCACCCGCCA-----GCCG---TCCGCTCTGCCCTCCACAGACACCCAAT----GGCCCCGAAGCCCCCTCTGTGCCCCGCGC---CTCTTCTCCCCCGACCCAGACTTCACCCC--GAGTCTCCCCCCTGCTCAGAACCTTCCAGAAGCCCCATC-TCTCAGTGCAGCCCTGGCCCC------TTGTTGCCAGGCAGCGTCC--TCCCGCAC--ACCCACGCGAGCACCCGGGGACATTTGCGCCACGCGCAGCCCC--AGCCCGCATCCCGCCTGGCGCTCGCATTTCCTCGGCCCCCAGCG--TGACCCGGGTGTCCACGCCACGCC--GGGCACCGCAG-------------CATGTGGGGCGGTGGACACAT-GCCGGACG-----------------------     
15 Galeopterus_variegatus-NW_007727608.1-252309_252501      77.2%  34.8%    -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCGCCTCTTCCAGGAAGGCCTCCCGGGCCC-------------------------GCAGGGGAGCTGTCCTGCCCGGTTTGAGGCTGGGCTCACCGTGTCACCCTCT--GT----------GTCTTTCTGGGGGTCAGGGCAAG--GCTGAGGAGGACGTGCAGTCTGGGGAGGATG--------TCGGAGCCAGCAGACGGAGCGGCCGCCTCCTCGCAAGCGGCTTGTCCAAGCGCAAGGTGGAGCAGGGGGACTGGTGGGGAGGCGGGCGGGGTCTCCTCCGGCCCAGGGCCCCTGGCCTGCTACGTGTGCCGGGGC--TGGGAGCCCAG-------AGACAGG--CT-GGTAGGAGCCAGTGCTTTGCT----------GGC------------------------------------------------------------------------------------------------------------------------------------------------------CCTGTGGGCACTGCCTCCTCTGGCCCACACTGGCCAATGTCCCAAGCTCAGGTACTCTGTGGCTGCCCTGGG--CACAGG----------CCAAACTGGGCACTGCAGAGGCCTAGGCAG----------ACCTCGTGGGCAGGATAGA---------CCCGGAGGC---CCCCAGAACCCA-GGAGG----------------------AATGGCCCCCTCCGAGAACCCGTCCTCCTGCTCCTCGGGTCACGATCCTCCTCCTGCACAGAAAAAGGGCAGCAAGCTGAAGAAGGTGGCCAGCGTGGAGGAGGCGGACGGGGACCTGGACTCCCCAGGAAGCCAAAGCCGAGGGTCAGTTACCTGCCCTGGGGTGGGGGGGGGCCCTGCACCATCCTGGAGGACGCTGTACCGTCCAGAGGGATTTTGTAT----CACCCGGGGGGGCCCTGCACTACCCTG--GGGGACC---CTGTAACACTTAGGGGGCCCTGCACAGTCCT-GAGGGTCCCCGCACAAGCCCCAAGGGCTTGCCGGCTGGGGGTCCCCATGCCCTTCTCTGAAA-TGACTGAC-CCCGAGTGCCTGTCAGGACG-----------GGGGGCAGATGCGGG------------AG---CCCTGGTC--CCT----------GTTCCCATCCTGGACTCTCGCGGAGGCTGTGGGAGGTGGAGTTGTGTCCAGGCAATAGTGG---ATGTGGGGTGTGCAGACCC---ACGTAGCAGCTCCAGACAGC--------CCTGTGGGGCGTGG---ACC-CTGGGGT------------------------     
16 Mastomys_coucha-NW_022196900.1-185866_186059             73.3%  29.7%    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGCCTCCTCCAGAAAGGCTTTCTGGGG------------------------CCACTAGGGAGCTGTCCTGCCTTCCTTGCATGGTTGGAGGTTGGGTTCAACTTCT--AT----------CTGTCTCTCAGGGTCAGAGCAAG--GTTGAGGAAGATGTGGAGTCCGGGGAGGACA--------CTGGGGTGAGCAGGCGAAACAGCCGTCTCCTCATGAGCAGCTTCTCCAAGCGCAAGGTAATGGT---CCTGGGCTTGGGGGGTCCCATGTGGTTCTACCACCGTCCCTGTAC-CATTTGCTAGCTGTGGTTGGGGTCAGGTTTCTAAG---------GTTA-------GGCTACTGCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTTGACCCACACTGGCCAGTGTCTG--AGATTCAGACACTGAGAGTCCCAAGAGT-CC-CCCAGGGC----------CAGGGCACTGGAGATATCTCTGTGG------GCCAATTGGACAGAA-ACTCAGG---------AACCTGGGC--------AGATAGCCCCTACCCTGC-------ACTTCCTGGCCTTTTACATGTCCTGGCTTGATCT-----CAGGTCA----CAATTCCACTTTCCCATACAGAAAAAAGGCAGCAAGATAAAGAAGGTGGCCAGCGTGGAAGAGGGGGATGAGAACCTGGACTCCCCAGGAAGCCAGAGCCGAGGGTCAGTGCCTTGTCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACGCATGCACGCGTGTGTGCTCATGCGAGCATGCAGGTGTCCCTG-TGAGCATG-------CAGGTGTCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-------TGTGAGAGAGAGAGAGAGAGA--GAGAGAGAGAG--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCTGCCCAGTCCCT-GAGTGCTGAGCAGAGATGA------------GC---AGAGATGG--GTGGCTGGTATGGGAATCCAT-------------GAACACTTAAGCAGGTAATGAGAAAGTG--GAGCTGTCCG--GGAAGCAGCAGAAAGCACAGGGTGAGCCGAGCAGCACTCGGGTACTAGGCCTGCAGGGCTCCTGAGGTCCC------TCAGAGTCTCTTGGGCATGGGCACT-     
17 Nannospalax_galili-NW_008355419.1-184623_184785          71.0%  28.1%    -----------------------------------------GCCAGCTGAAGAGTATTACAGATGCAGCTGCTCC---TAATACGCGGTCTCCATCCATGGTAAAGAAATCTGGAACTCGTTACTTGAGTTTAAAACCATACATTGCAG--GAGACTGGTGTGGGCACGTAAGTGGATGCTGGTGCTGTTCTGAATCCGACTCTCAGAACTTCTCCCTAGCAGCTCTGCCTACCCGGGCCC----------------CAGATCGTGGCCTTGCTCCCAGGCCTGGTCTAGTCCACCTCCTCTGGGAAGGCTTCCTGGAG------------------------CCTCCAAGGAGCTAGTCTGCCTTCCCTGTCTGATTGGAGACTGGGCTCAACCTCT--GT----------CTACCCCTCAGGGTCAGAGCAAG--GCCGAGGAGGATGTGGAGTCCTGGGAGGACA--------CAGGGGCAAGCAGGCGGAACAGCCGTCTCCTCCTGAGCAGCTTCTCTAAGCGCAAGGTCAGCAGGAGTCCTGGGTTGGGGATCTGGAGTGACCA-------TCATCCCTTGT-TAGCTGCTGGCTGTGGCTGGGGTCAGGAGCCCAGG---------GCCAGGGGGCTCTAGCCACTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCTTGACTCACACTGGCCAAAGTCCAAGATTCAAATACCCCATGGCTGCCTGAGAG-AACTCCAGGAT----------CA--------GGGCAGAGATTCCTG------TGGACTTGGGTGGGA-ACCCAGG---------AACCTGGGC--------AGAAAGACCCCTACCCTG-------TACTTTCCTGCCTTTGCATGTCCTGGCCTGACCCATGGCTCCCCAAGTCACAATTCTGCCTCCCTGCACAGAAAAAAGGCAGCAAAATAAAGAAGGTGGCCAGCGTGGAAGAGGGGGATGAGGACCTGGACTCCCCAGGAAACCAGAGCCGAGGGTCAGTGCCCTGCCCAGTGTATGTGGGGAGGGGTGTCCCTACCCAGTCCCAGGGGGCTCTCCCTGAGTGCTGGGC--A-GGACTAAGGGTGGGCAGGTGCCAGGTCCCA--TGCCCTATTTCCATTCTGAACACGAGT--TGAAGTGGAGCT--G-------TTTTCCAGGCAACAGCAGA---------------------------AGGGCATGTGCAACCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
18 Dipodomys_ordii-NW_012267222.1-184514_184708             78.2%  34.0%    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTCTCTTCCAGGAAGGCCTTCTGGGGCCACCAGGGAGCTG-------------CCCTAT---CCCGGCTGGCTGGTTTGAGTCTGGGCTTACACTGTACCCATGT------------------CTCCTAGGGGCAGAGCAGGGCTGA--GGAGGACGTGGAGTCTGGGGAAGACACCAGC--------ACCGGCAGGCGGAACAACCGCCTTCTCATGAGCAGCTTCTCCAAGCGCAAGGTGAGCGGAGCTCTGAAC-------------------------------------------------------------------------------------CAG------ATCCCG-----------C------------GCA----TGAGGTCCCCACCCACCCCAGGACGGGGTCCTGCGCATGGGGTCCTCA-----------CCCACCCC---------------AGGACGGGGTCCTGCGCATGGGGTCCTTTGTTCACCCCAGGA-----CGGGGTCCCGCCCAT-GGGTTCCTCC--ACCCACCCCAGGTGCAAGCTGTTGCTGGACCAGGGCTG--GTCAGGAGCCACTGTCTGGGTGGCCCTCT------------GGTCACGTCTCTCCATAGCCTACAGCTA------------TGGAGCCAG-AGCCATGGCCAGGTGGAGCAGGACA-C----GCAGATCAGAACGGGGGTGG-------GAGGTGGGTGAGCATCTCCTGCGCCCTCCTGCCCTGGGCCCTGGCCTGGCCTGACCTCGGGCTCCTCACAGAAAAAGGGCAGCAAGATAAAGAAGGCGGCCAGCGTGGAAGAGGGAGACGAAGACCTGGACGCCCCAGGAGGCCAGAGCCGAGGGTCAGTGCCCTGCTGTGGCAGACTTCTGTCCAGTCCCAGGGTCCGCCAGCCACGGACCCCTCACCCATCTCTCAGGGC----GCCCCTGGGAGGCTGGGCAGGGTGCTT--CCCCCCC-------GCCCCCGC-CGCCCCGTA-------------GGCCTCCGAGGAGGCAGAGGGGGCTGA--GGCTCTGGGG------CTGGGGCTG------GGGCACA--GACCTGTGCACGGCTAGGACTCTGTAGCTGGGGCACCAGGACTGGGCTGCCTGATCCCAAGGGACCCCCCCCCCGCCCTGCTCCGCCTCCCAGGACGTAG---CTCCCA------------------CCCCT-------------------TCCCGAGCGCCCGCCCCACACCTTGCCCAGGGCCA---------------CATCTGCTCCTGGCCCT----------------------------------     
19 Ailuropoda_melanoleuca-NC_048228.1-199610_199783         80.6%  33.1%    -------------------------------------------------------------------------------------------------------CCAGACACACAGACGTGTTCATCACACACTCACCCTCCGTGGGAGAAGAAATTCAGAATCG-------------------GGGCCTT----A--ATGAGTTCAAA--------------GCCGCACCCC-GCGAGGGGCCC-GTGGGGCCTGCACTCT---CCCTCTCAGACCTTGCTCCCCCGCACTGCCTCAGCCCTGGGTGGGCGGTG--------------------------GGTTGTGACTCCACGGCCGGGGCGGCAGCCAGCCCCCCCTTC---TCCTG-CTCCCCG--TC----------ACCTCTGTCTCCCTGTCCCCCAG--GCCGAGGAGGACATGGAGTCCGGGGAGGACG--------CCAGGGCCAGCCGGGGGAACAACCGGATCCTTATGAGCGGCTTCTCCAAGCGCAAGGTCTGGCGGGGCTCCCGGGTGGGGCCACCTTGCCGGAACCCACCATGCTCCGTCCTCCCGCTTGCCCAGCTGTCCCTGTGCTGGCCAGCCA-------GGGGCGTC--CC--CTCCAG----------CTCC-----------------CCGGG----------------CCCCTGGCCTGCCTCCCAGAATCCCCCTTT----GGACTCCTAGCC----------------------------------ACGTC-ATCTGCCTGGGGCTACG-CAGGGCAGGTGCCTCGATG-------------GCCCTCCCCTGGCC-TGCACCAGCCAGC---------G---------------------CCG-TCCCTCGGGGCCCAGGCCGACAGGCACACTGCAGAGGACAGGCCGGCCCAGCCGGGCAGCTTGGGTG--CCAGGA---------CCCCAGGG-CA----GCAGGCCTGCCT-CCTGCGCCCTCCCGGCCT----GCACAGGGGCCGCGGCTGAGCCAGGGGCCCCGCAGAGCCTGACTCCGCTCTCCTTCCACACAGAAAAAGAGCAGCAAGCTAAAGAAGGCGGCCAGCGTGGAGGAGGGGGAGGAGGGCCTGGACTCCCAAGGCAGCCAGAGCCAAGGGTCAGTGCCCTGCCCCAGCCTGGACCCTTCACAGACAGTG----GCGGCGGCAAGTGCCGAGGCCCTTGTCCCTGCAACGCC-AGCG---TTGGACGCGCAGGCCCTGCGGTGGCCCC----GTGACCGC-----ACAGTGGG---------------------GTGGGGGAGGGGGAGCCCA--GGGAGGGGACCTCAGCGTCTCGGTGACACACTGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
20 Meles_meles-NC_060066.1-198437_198541                    80.3%  34.0%    ----------------------------------------------------------------------------------------------GGTTTAGAGCAACACACCCGGGGGGGCCCGCTGAGCCCTCCACGCCCCTCTTGGAGCCCGGTCCCCGGCA------------------GCGGCCTC----G--GAGCCCACC-A--------------GGCGGGCGTG-GACCGGGCTCC-CACGGGCCTGGGGTGG-----------CAGCAGCCCCTCCCGCTCTTGCTCCCGCTCCC---TCCGGCT--------------------------CGTTCT---GGGGAGGCCACCCAGAGCTCTGGGCCTGAGGCT---GGGCT-CCCCCTG--CT----------GCCCCTGTCTCCCTGTCCCCCAG--GCGGAGGAGGACGTGGAGTCGGGGGAGGACG--------CCGGGGCCAGCCGACGCAACAACCGGACCCTCATGAGCGGCTTCTCCAAGCGCAAGGTCGGGCGGGGCTCCCAGGCGGGGCACC-TTGTTGGAGCCCCCTGTGCTCCTCCTGCCCGCGGGCCCAGCTGTCCCTGTGCCAGCCGGCCG-------G-GCCATC--CC--CTCCAG----------CCCC-----------------CAGGG----------------CCCCTGACCTGCCTCCCGGAATCCCCCCCCCCCGGGGCTGCTCGCT----------------------------------ACATC-GTCTGCCAGGGGCTGCT-G-GGGCAGGTGCCTCGATG-------------GCTCTCCCCCCGGTGCACACCAGCCAAC-----GCCCC---------------------TGG-CTCGCTCGGGCCCAGGCCGCCCAGTGCACGGCAGAGGACCGGCAGGCCCAGCCGGGAAGCCCTGGTA--CCAGCC---------CCCCCCCGACG----GCAGGCCTGCCT-CCCGCAGC-TTCTGGCCT----GCG-CAGGGCCATGGCTGATCCGCGGGCTGCGCCGGGCCTGACCCCAC--TCTCCCTCCACAGAAGAAGTCCAGCAAGCTGAAGAAGGTGGCCAGCGTGGAGGAGGGGGACGAGGACCTGGACTCCCAGGGCAGCCAGAGCCGAGGGTCAGTGCCCTGCCCCAGCCTGACCCTGGACAG-----AC----GGGGCAGGAAGTACCCAGGCCCGTGTCCCTGAAATGGCGGATA---CCAGACGGGCCGGCCCTGCCGTGGCTCC----GCGAAGTC-----ACAGTGGG---------------------CTGGGCCAGGGGGAGCCCA--GTGTGTGGACCTCAGGGTCACGGGGCCGGACGGGCCAGC-A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
21 Balaenoptera_acutorostrata-NW_006725355.1-197619_197727  77.1%  32.6%    --------ATCTGT--G--GGAAAAAATCAGCACTG------GGCGCTGCCGAATGGCACACTGTGGGGAGCTGATACGCGCGCCCCGTTCTCACGTCTCTGCTCCCGGC---AGCCGCCTATGTG----------------------------------------------------------------------------CACCCC--------------------GGGGGGCTGGAGCAGTGGCCAGCCTGGGCCCGGCTCCCCCCTTCCTCCACGCCCCTCTCAGCTCCCTCTCTTCCAGGAAGGCGGCCCGGGGCC----------------TCTGGGAGGAGCTGCCCAGCCCCATCCCCGGCCGGGTCTGAGGCT---GGGCTCACCGCAC--CC----------CCGCTGTCTGTCTCTCCTCCCAG--GCCGAGGAGGACGCGGAGTCGGGGGAGGAGG--------CCGGAACCAGCAGGCAGAACAGCCGGCTCCTCGTGGGCAGCTTCTCCAGGCGCAAGGTCTGCCGGGCTCCTGGGTGGGCTCCCTGCCCCC---ATGTGCCCC---------------------AGCTGTCCCTGCGCCAGCCAGACTT------GGGGGGTC--TC--CTCCAG----------GAC------------------------------------------------------------------CGAGGCCCTCCGGGATTCC----------------------------------TGGAG-CCCTGGTCGGGGCTGCA-TGGAGCAGGTGCCTCGATG-------------GCCCTCCCCTGGTCCACACTGGTCGATGCCCAGAGTGC---------------------AGG-TCACCCAGGGCCCGGGCCGAGCAGGGCACTGCAGAGGAGGGGGCAGGCCCGGCTGCAGGGTGGGC----TCCAGG---------ACCCCAGGGCT----GCAGGCCCTTCC-CTCGCAGCCTCCTGGCCT----CTGCAGACGGCCCGGCTGAGCCTGGGGCTCCACCAGTCCTGACTCTGCCCTGGTTCTGCACAGAAGAAGAGCAGCAAGCTGAAGAAGGCAGCCAGCGTGGAGGAGGGGGACGAGGACCTGGACTCCCAAGGCAGCCAGAGCCGAGGGTCAGTGCCCTGCCTCCACGCCGGGCCCTTGAAGAGGCACC---GCGGCAGGAAGGGCTGAGACCGTTGTCACGGCGACAGCACGCG---TCAGATGCGCAGGCTCAGGGACC-GCAC----GGT---------------GGG---------------------GAGGGGCAGTGGGGGCCCA--GGGCAGGGACCCCGGGGTGCAGGG-CCAGACTGGCCAGC-GCG----------------------------GGTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
22 Dipodomys_spectabilis-NW_024870976.1-182584_182687       78.2%  29.5%    ----------------------------------------------------------------------------------------------------------AGGACGGGGTCCCGCACATGGGGTCCTCCA------------------TCCACCCCAG------GA-----------CGGGGTCCCG-CGCATGGGGTCCTCCATCCACCCCAGGACGGGGTCCCGCGCATGGGG---------TCCTCCGCCCACCCCAGGACGGGTCCCGTGCATGGGGTCCTCCATCCACCCCAGGACGGGGTCCTGC----ACATGGGGTCCT-------------CCATCCACCCCAGGACGGGTCCCGTGCATGGGGTCCTCCATCCACCCCAGGACGGGGTCCCGCGCATGGGGTCCTTTGTTCACCCCAGGACGGGGTCCCGCACATGGGGTCCTCCATCCACCCCAGGACGGGGTCCTGTGCATGGGGTCCTCCATCCACCCCAGGATGGGGTCCTGCACATGGGGTCCTCCATCTACCCCAGGA-------------------------------------------------------------------------------------GGG------GTCCTG-----------C------------GCA----TGGGGTCCTCCGCCACCCCAGGACGGGGTCCTGCACATGGGGTCCTCC-----------ATCTACCC---------------CAGGAGGGGTCCCGCACATGGGGTCCTCCGCC-ACCCCAGGA-----GGGGGTCCCGCACAT-GGGGT-CCTC--CACCACCCCAGGTGCAAGCTGTCGCTGGACCAGGGCTG--GTCAGGAGCCACTGTCTGGGTGACCCTCT------------GGTCACGTCTCTCCATAGCCTACAGCTG------------TGGAGCCAG-TGCCAGGGCCAGGTGGAGCAGGACA-C----GCAGATCAGCACGGGGTGGG-------AGGTGGGGTGAACTTCTCCTGCGCCCCCCTGCCCTGGGCCCTGGCCTGGCCTGACCTCGGGCTCCTCACAGAAAAAGGGCAGCAAGATAAAGAAGGCGGCCAGCGTGGAAGAGGGAGACGAAGACCTGGACGCCCCGGGAGGCCAGAGCCGAGGGTCAGTGCCCTGCTGTGGCAGACTTCTGTCCAGTCCCAGGGTCCGCCAGCCATGGACCCCTCACCCATCTCTCAGGGG----CTCCTGGG-AGGCTGGACAGGGTGCTT--CTC--------------CCCAC-CACCCCGTA-------------GACCTCCGAGGAGGCAGAGGGGGCTGA--GGCTCTGGGG------CTGGGGCTG------GGGCACA--GATCTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
23 Miniopterus_natalensis-NW_015504651.1-689915_690131      77.8%  33.5%    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCCCCTCCTCCAGAAAGGCCTCCTGGGCTA----------------CC-TGGAGCACCTGCCCG--CCCCCACCCTGCCTGGTCTGACGCT---GGG---CTCACCC--TG----------TCCCTGTCTGTCCCTCCCCCCAG--GTCGAGGAGGACATGGAGTCTGGGGAGGACC--------CTGGAGCCAGCAGACGGAACAGCCGGCTCCTTGTGAGCAGCTTCTCCAAGCGCAAGGTCCGGGGACTCCTGGGCTGGGGTCCTCCCTACACCCACGGGCCCC---------------------AGCTGTCTCTGTGCCA----GCTGG------GGGGCATC--TC--TTCCAG----------TCCC-----------------CAGGGTCCCAAGCCCACCTCCCCCTTTGAGTTCCTGGCAGCATCGCCTGGCTGCAGGTGCTGGGGTC----------------------------------TGGAG-TCCTGGTCGGGGCTGGA-CAGAGCAGGGGCCTTGATG-------------GCCATCCCTTGATCCGCACTGGTCAATGCCCTAAGCTC---------------------AGG-TCACCCGGGTGCCCGGCTGAGAAGGGCACTGCAGAGGATAGAGCTGGCTCAGCCGGGCACTGTGGGT--GCTGGG---------ACCCCAGGACT----GC---------------------------CT----CTT-GCACCCTCCCGGCTGGCCTTCAGGCTCTGAGGTACTGACCCTGCCCTCCTTCCACACAGAAAAAGAGCAGCAAGCTAAGGAAGGTGGCCAGCGTGGAGGAGGCGGAAGAGGACCTGGACTCCCAGGGCGGCCAGAGTCGAGGGTCAGGGCTGGTCCCACCCTAGACCCTGGAAAAG--ACAG--------------------CGGCCATTGTCCTGGCCACAGCCAAAG---TCAGATGCCCAAGCCATGGAGGGCTCGG----GCGG---------GGCAGTGG---------------------GACAGAAAGTGGGGACCCA--GGGTGTGTCCCCTGGGGAGGCGGG-GCCGGGTGGCCAAG-GCA----------------------------GGCTCCTGGGCTTGT--CCCTGGAG--CGCCATCCCAGTCTGAGAGGTGTTCTCCGGGAGGCTTAGTGCC--TGCCC-----CTCCCTCTGTGTCGCCTTTCGGGG--------CA--TCCCCTGTGTGTCCACTGCGCATCCTGGCACCTGGAA-------------CACAGGGCCGAATGGACACTT-GATGGATAGTCTCCG----------------     
24 Otolemur_garnettii-NW_003852462.1-185031_185293          75.3%  27.4%    ---------------------------------------------------------TGGTTTGTCATGAGAGGC---TGGCTGATGGTGGGCTTGTGAGTGGACGCTTTGTTGGGCACAGATTTCTAGTCCTCTCCTTCCGGTGG--------GCACCTCTGGG-----CCCTGGG-----GCAGAGGG-----------------A-----------GCAGCAGCCTACTGGCTTGAGACCT--GGTTCCCTGCCTTCC--TTGCCATCCTCCCAGGCCAGGCTCCATCCCACCAATTCCAGGAAGGCCGTCAGGGCTG----------------C--TGTGGGGGCTATCCCACCCCCTG-CCCTCTTGGGC-TGGGCT---CACCCCATCTCTC--TG----------TCTCTCCCTTGGGTCAGAGCAAG--GCAGAGGGTGATACGGAGTCTGGAGAAGACA--------CCGGGGCCAATAGACGAAACAGCAGCCTCCTCGTGAGCAGCTTCTCCAAGCGCAAGGTCCAGTGGGCTCCTGGGCTAGGGCCTGTCTGAGCCCCTGTTCCCTCCCCAGATTCCCCCAGCCCTGGTCTGAC-TCCTGGGATCCAGCCTT------GAGGCTGG--GG--CTGGTC----------AGC----------------------------------------------ACTGGATGCCTCAATGGCCCTAGGATCACTG------------------------------------------CCCTT-CACTAGTCCACTCTGGC-CAATGCCGCAAGCTCA-----------------AATTCCCCATGGTTCCCTT-----------------G---------------------AGA-GTTCACTGGGCCCT---------GGGTAATGTGGAGGATGG------ACTGAGAGGCCATGTGGGCC--CCTGGG---------AACCCAGGAGG----ACAGGGCCCCTC-CCCATACCCTTCCAGCCT----TTGCTGAT-----GGCCTGGCCTGGGTGGGGCCCAGGGCTCACAACTCTGCCTTCCTGTGCAGAAAAAGGGAGGCAAGCTGAGGCCCACAGCCAGCCTGGAGGAGGGAGCCTCGGACACAGACTCCCCAGAGCGCCAGAGCCGAGGGTCAGTTCCCCACCCTGGGGAGAGGGAAGGCCAGGACAGTCCTGGGGGCTGCACTGTCCCATGCCTTTCTCTAGGGT------GG-----TCCTATGGGGGCTGACTCCTCTCCCCAC----CCCTCCTT-----GCACCTGC---------------------CAGCCACACACTGTGCCTA--CAGTGTA----------------------------CCCC-TCT----------------------------GTGCCCTGAGCTTCT--TTCCACAG--ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
25 Tursiops_truncatus-NC_047034.1-187048_187149             68.1%  27.5%    ---GTAATAGCTTTGCCGCTGCAAGAAGCAGGCGGGGACTCCTGAGCTGCGGGACCC--CCGTATGAGGATGACCTAAGCGGGCACGCCGAGGAATGTTCCGGACACACA---AACGGCATTTATTAGGCCGTCACCATCCATGGGAAG--AAATCAAGACTAGG-----CACTGGA-----GGAGCGTC----G--AACGGCACATCGTGGGGAGCTGATACGGGCGCGCGAGCAAGCGCTGTTCTCAGGCCTCTGCTCCCCGCACACTTCCTCCACGCCCCTCCCATCTCCCTCCCTTCCAGGGAGGCGGCCTGGGGCC----------------TCTGGGGGGAGCTGCCCATCCC--------------------------------AACCCAG--CC----------CCCCTGCCTGTCTCTCCTCCCAG--GCCG---------------------AGGAGG--------CCGGAACCAGCAGACGGAACAGCCGGCTCCTCGC--GCAGCTTCTCGAAGCGCAAGG------------------------------------TCTGCCGGG---------------------CTCCCCACGTGCGCCAGCCAGAGCT------GGGGGGTC--TC--CTCCAG----------GAC------------------------------------------------------------------CGAGGGCCTCTGGGATTCC----------------------------------TGAGG-CCCTGGTCGGGGCTGGA-TGGAGCAGGTGCCTCGATG-------------GCCCTCCCCCGGTCCATG---GTCGACGCCCGGAGTGC---------------------AGG-TCACCCAGGGCCCGGGCCAAGCAGGGCACTGCAGA---GGGGGCAGGCCCGGGTGCAGGGTGGGC----GCCGGG---------ACCCCAGGGCT----GCAGGCCCTTCC-CTCGCAGTGTCCTGGTCT----CTGCAGACAGCCCGGCTGGGCCTGGCGCTCCAGCAGTCCTGACTCTGCCCTGGTTCTGCACAGAAAAAGAGCAGCAAGCTGAAGAAGGCGGCCAGCGTGGAGGAGGGGGACGAGGGTCCGGACGCCCAGGGCAGCCAGAGCCGAGGGTCAGTGCCT-GCCTCCATGCCGGGCCCCCGAAGAGGCAGC---GCGGCGGCACGCGCTGGGACCCTTGTCCTGGCGACGGTCAGCG---TCACATGCGCAGGCTCAGGGACCCGCAC----GGT---------------GGG---------------------GAGCGGCCGTGGGGGCCCA--GGGCAGGGACCCCGGGGTGCAGGA-CCAGACTGGCCAGC-GCG----------------------------GGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
   clustal                                                                                                                                                                                                                                                                                                                                                                         *                                                                                                                                        ...                           :  *                   . .   . :    *.  .           .. *  *  * . * ..                                                                                                                                                                                                                                                                                                                                                                                                                                                          .                                                                                                                        .****..**.  .. ***..*.*.*.. . . ****     : *.         ... . .*.  *.*..*   . *. ** *. ****..*