Reference sequence (1): Target
Identities normalised by aligned length.
Colored by: consensus/70%

                                                          cov    pid  1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .         .         .         .         :         .         .         .         .         6         .         .         .         .         :         .         .         .         .         7         .         .         .         .         :         .         .         .         .         8         .         .         .         .         :         .         .         .         .         9         .         .         .         .         :         .         .         .         .         0         .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         . ] 1442
 1 Target                                              100.0% 100.0%    --------------------------------------------TCCCCCAGGGGAAGAAGCTCCCAGCCAACATCAGCGAGGATGCGGAGGAAGGCGAGGTGTCTGATGAGGACAGTGCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGGATGTGAGTCGGGCTGGAGGTGGAGGGGGGC--GCGTGGAGCCTGCAGTTCCCAAGAA--------CAGCTG----TCCGTCCTTGCTGTTGGGGCGAGTTAGAAAGGGAGGCAT---CCGGGAGAGAGGGACATTGGGG---------------CAGATTCGCACAGCGGCCTGGGGCCT-GGGGGGTCCTCC-CT--------------G-----------CCCACCCACCCCTCTGCATGAGAGCTGC----------------------------------AGGCCTGCCTCTTCC--CAGTTTCAGCTCCCACATTTGAGCTGACTCTTGGGGTACCATCCACTCCCCCTGCCCTGTCCTCTTGGCCCCTCAGTAAGTGGGGGCAGCACTGGGGGCTGGGTCCCAC----GCCAGACTCCA------------CCCCATTCCCACCAGCACCTGGCCCACCCAGG-CCCTGGCACAGGAT-TTCCCAGCTTCCCGCCCTTTTCCTCACCAAGTCTGGCTGGACGCTGG----------------------------GTGGCTGGTAGTACTGCCCAGCCACCCCCGTGGCCAGT-GCTGGCCTCATCTCCAAGCAGTGCCATCTCTAAGGTCAACTCTGATATGGGG-GTCCCACCAGCAGTCACCTCCA----------------------------------CAGAGCGCTGTCACTGTGTCCCCGCC---------------AGGGCCAGGGTGGGGGGCTGCAGAGATGG---GAGGGTCCTGTGAGGTGTTGGGCTCGGGG-------------------------------G--------CGCCGATC--TCCTCTCC--TCTGGACACTGCTCTGGGGCCGCTGCTGTGAGGCAGGGAAGGC---CGTTGCTTCCAGAGGGGCCATGCATGGGGAGATAATTGTGCAGCGT-G--CTCCTGGCCACGCGGCCAACCATTTTAGAAACTCCTGAGGCAGCAGCACTCTTCCTGCCTGGGATGTGCGGCACACGCCTCTGTGTGGCCCACGTGATGGCAA-AGGCAGCTCCACGGTGCTCCTGGCTTTGTGCCCACTCCAACCTGGCACC---------AGGGGCGTC-------------------------------------------------------------------------------------------------TGA-----------------------------------------------     
 2 Rhinopithecus_roxellana-NC_044560.1-208236_209260    96.8%  86.9%    ----------------------------------------------------------AAGCTCCCAGCCAACATCAGTGAGGATGCGGAGGAAGGCGAGGTGTCTGATGAGGACAGCGCTGATGAGATTGACGATGACTGCAAGCTCCTCAATGGGGATGTGAGTCGGGCTGGGGGTGTGGGGGTGGGTGGAGCCTGCAGTTAGTTCTCAAGAA--------CAGCTG----TCCGTCCTTGCTACTGGGGCGAATTAGAAAGGGAGGTGT---CCCGGACAGAGGGACATTGGGA---------------CAGAAGTGCACAGTGGCCCAGAGCCTGGGGGGGTCCTCC-CT--------------G-----------CCCACCCACCCCTCTGCATGAGAGCTGC----------------------------------AGGCCTGCCTGTT----CCGTTTCAGCTCCCACATTTGAGCTGACTCTTGGGGTGCCATCTACTCCCTCTGCCCTGTCCTCTTGGCCCCTCAGTAAGTGGGGGCAGCACTGGGGGCTGTGTCCCAC----GCCAGACTCCA------------CCCCATTCCCATGGGTACCTGGCCCACCCAGG-CCCTGGCACCGGAT-TTCCCAGCTTCCTACCCTTTTTCCCACCAAGTCTGGCCGGACGCTGAGTGGCTGGTAGTCCTGGCCGGACGCTGAGTGGCTGGTAGTCCTGCCCAGCCACCCCCGTGGCCAGT-GCTGGCCTCATCTCCAAGCAGTGCCATCTCTAAGGTCAACTCTGATGTGGGG-TTCCCACCAGCAGC-ACCTCCA----------------------------------CAAAGTGCTGTCACCGTGTCCCCACC---------------AGGGCCCGGGCAGGGGGCTGCGGAGTCAGGAGCCCCTGACTGTGAGGTGCTGGGCTCGGGG-------------------------------G--------CACCGATT--TCCTCTCC--TCTGGACACTGCTCTGGGGCTGCCGCTGCGAGGCAGTGAAGGC---CGTTGCCCCCAGAGGGGCCACGCATGGGAAGATGATTGTGTGGCGT-G--CTCCTGGTCACGCGGCCAACCATTTTAGAAAGTCCTGAGGCAGCAGCACTCTTCCTGCCTGGGATGTGCAGCGCACGCCTCTGTGTGGCCTGTGTGATGGCAA-AGCCAGCTCCACGGTGCTCCTGGCTCTGTGCCCACTCCAACCTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
 3 Cebus_imitator-NW_016107460.1-190541_191442          90.6%  67.7%    GCTTCCCAGTGTCTTCTCCAGGGCCCCTCCCATCGTGCTCCTCCTCCCCCAGGGGAAGAAGCTCCCAGCCAACATCAGCGAGGATGCGGAGGAAGGCGAGGTGTCTGATGAGGACAGTGCTGATGAGATTGATGATGACTGCAAGCTCCTGAATGGGGATGTGAGTGGGGTGGGGGTAGGG--CGGGTGGGGGTGGGGCCTGCGGCTCCCAAGAG--------CAGCTG----TCCGTCCTTGCTGTTGGGGCGAGTTGGAAAGGGAGGCAG---CCGGGACGGAGGGACGTGAGCG---------------CAGATGTGCACAGTGGCCCAGGGCCTGGGGGGGTCCTCC-CT--------------G-----------CCCAGCCACCCCTCTGTGTTACA----------------------------------------GGCCTGCCCGTGCC--CGGTTTCAGCTGCCATGTTTGAGCTGACTCTTGCGGTTC----------------CCTGCCCTCTGGGCCCCTCAGCAAGTGGGGGCAGCACTGGGGGCCAGGTCCCAT----GCCAGACTCTA------------CTCCATTCCCGCTGGCACCTGGCATGCCCAGC-TCCCTGGTCTTT------------------------TCCCACCAAATCCGGC---------------------------------------------------------CCGAGGCTGGGTGGCCAGT-GCTGGGCTAACCTCCAAGCAGTGCCATCTCTAAGGCTGGCCCTGATGTGGGG-ATCCCAGCAGCAGTCACCCCA-----------------------------------CCGAGCACCGTCACTGTGTCCCCGCT---------------AGGGCCAGGGCGGGGGCTG----TGCAGTCGGGAGGGTCCCGTGCAGTGCTGGGCT---------------------------------------------TGGGGGTG--CCCTTTCC--CCTGGGCACTGGTCTGGGGATGCTGCGGTGAGGTGGCGAAGGC---CGTTTCTCCCAGAGGGGCCGGGCATGGGAAGATGACTGAGCAGATTTG--CTCTGGGCCACGTGGCCGACCATTTTAGAAAGTCCTGAGGCAGCAGCACTCTTCCTGCCCCGGGTGCGCGTC-------TCTGTGTGGCCCACGTGATGGCAAAAACCAGCTCCATTGTGCTCCCAGCTTCATGCCCACTCCAACATGGTACC---------GAGACATCT-------------------------------------------------------------------------------------------------GACCCCCAAGGCCCAGGCCCTGCCCTCAAGGGTTCCA-AGTTCATCA---     
 4 Tupaia_chinensis-NW_006198262.1-194232_195278        85.7%  47.6%    ------------------------------------------------------------------------CATCAGTGAGGATGCAGAGGAGGGTGAGGTGTCTGATGAGGACAGTGCCGATGAGATTGATGATGACTGCAAGCTCCTCAATGGGGATGTGAGTTGGGGCTGTTGGCTTGCTCTGGGGACCTGGGGTTGGGGGAGCCTAAGCTTCTTGT------------------TTTGCTGTCAGGGAGAGTTAGGCAGAGAGCCAG---GAGGAAGAGGCA----C--------TGGGGCAGATGCTGAGGGTGCAAAGTTGCCTAGCCTTGGGGCCCCTCCCTGGCT----TTCCCACTCTCCATG-------------------------TGAGAGAAAC-ACCCTGT--GTTCTCAGCCAGCAGGCTGACCTCACACCTGTGGGTAGA--TTGTTCCAGTTCCCATTTCTGAGCCTAC--TTTGAGCACTGTCCATTCCCGCTGCCCAGTTCTCTTGTGCCTTCAGTAAG--GGGGCAGCACTGGAGGATGGTT---GCTCACCCCAGGTTCCA------------CACCTTTCCCACCCACACCTGTGCTTGCAGGG-CTCTGACCCGGAAT-ATCCCAGCTTCCTGACCTCTTTCCTCCGAACTGCAGTTGGACCCTAGGTGGCCAGTGGTCCAGTC----------------------------CAGCTACCCTCACGCCCAACACCAGCCCTATACTCCAAACAGCACCAACTCTAGGGTCGAGCCTCCAGTCCTG-CAAT-------------------GGCC-ACCTCCA---------------------CAGAGCCCTGTCACCTCCTCCTCACTGCGTCTAG---TTGAGCAGCCTGGGCTGGGGGCTGTGGGGAGAGACTGAGAAGTCATGGAGGGCTTCCCACAGCT--------------------GCGGGCTTGGGGATTCTGTAATTAGCATCTG----TTCT--CCTCTGGGTGCTGCTCTAAGCTGCTGCACAAGGCAGTGAAGGCTTTATTTCTCCCTGAGGGGCCATTGGACGGGAAAATAATTGTGCAGGAGCATTCCTGGCCATGTCAGGCTAATTGTTTTAGAAAAGCCTGAGACAGCGGAATTTTTCCCTGCTTCGGGCGTGCCTGCGCACTTCTCTGTCTGGCCCCAGGTGGTGGTAAACCTGCTTTCTGCGATGTCTACTTTGTGCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
 5 Nannospalax_galili-NW_008355419.1-175539_175777      81.6%  45.3%    -----------------------------------------------CCTAGGGGAAGAAGCTCCCGGCCAATATCAGCGAGGATGCAGAGGAAGGCGAGGTGTCTGATGAGGACAGTGCCGATGAGATTGATGATGACTGCAAGCTCCTCAATGGGGATGTGAGTGGGCC--AGGAGCTCTGCTTGAGGGCCTGGGGATGGGAAGCCTGTGGTCCCCAAGAGCAGCCTCTTG----TCCTGGCTGTCAGGTTAACCTAGGAAGGGTGGCAA---CCAGAAGGGATGGACATAAGGT-----AAATGCTGGCATGGTGTGCAAAGCTGCCTGGCCTTTAAGGAATT----------------CACTATGATGCTCTTCTCCCTCCCCTGCCCTCCACACAAGATACACGAACCCC---ATGTCTAACCAGCAGGCCACATCTACT------ATCGTC--CCATTTCGGTTCCCATTCTTGAGCTGAGT-CTTGGGTTTTGTCTTTGACCTTGGCCCAATCCTCTTAGCCCTTCGGTGAGTCTGGACAGCAATGGGGGAAGATCTGTCCTCACCATGGGTTCCA--CACC---ATGGCCCTCTTGCACTCATACCTGTCCTTGCCATA-CTCCTACTCAGAAT-CCCTCGGCTTCCTGACCAATCCAAGCAGGACTCTGGGT-----------GGCCAGTGGCCCTGCCC---------------------------A-GCTACCCTCAGGCCCAGT-----------------ACCAATGCCAACTCCAAGGCCAACTTCAATG-------CTA--------------AGACCTCCT-GTAGGCAGGTCCCTCTAGTGGTCATTATCACAGAGGACTCTGCGTCT--TCACTGTGG-CT----GGCCTGGTCCATGGCTGGGAGCTGTGGAGGAAGCCTGAGCCATCTGCAAGGGGCTCTGCTGGGAGGGGGGAGCTGTGTGGAGGTGGG---------GCTCTGTAACTGGGTCTTCT---------CTCCTCTGGGTGCAGCTTTAAGCTGCTGTGTGGCAATGAAGACTCTATTTCTCTCTGAGGAGCTGTTAAATGGGAAAATAATTGTGCCTGAGGCCTCTGGGCCAGAGCTGGCTAATTGTTTCAGAAAGTCCTGAGGCAGCAGATTCCTCCTGTTTTGGGTGTGCCCGCACAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
 6 Loxodonta_africana-NW_003573446.1-175807_175949      81.0%  35.0%    -------------------------------------------CTCCCCCAGGGAAAGAAGCTCCCGGCCAACATCAGTGAGGACGCTGAGGAGGGCGAGGTGTCTGATGAGGACAGCGCTGATGAGATTGATGAGGACTGCAAGCTCCTCAATGGGGATGTGAGTGGGGGTGGGGCTGGAGTGGGGGCAGGGCTGGGTATGGGTGGGGCCAGGGCAGCCCTGGGCAAG--------GGGCAGGAGTCCTGCAGCCTGATGAGGGGCTCATGTTCCTGTGGTCAGTGGAAATCAAGAAGGGAGGTGGCTGGAGTGAAGAACATC--AGGCCAGGAGCTGGGG----GATTTCCAAAGCCAACCAGGCTGCCGTGC---ATGAGCACTGGTCCTGGGGCCATGGCGGTCCCCTCCC--------------TGCCCACCTCCCCACACCCACTGGAGTGTGCACTCTGCATTCCCGGT--GAGGCTGACCCTCAGGGTGGCGGACATATGTCTGCTTGGGGCCCCTCTCAGCTTCCATTTCTGAACGGACCCTGA-----------G-GG-AACCATCCACTCAAACTCCTGTGACATCCTCTTGGCGTCCTCAGCGGTTAGGAGTAG-------CACGGGGCTCAGGGAACCTCCCCGGTCCCAGACAACACCACCCACACC----TGTACCA---GCCAGGCTCTAAC------CTGGGTT---------CCTCTCCTCATTCCTTGCCTTTCTGGCCAACCCTGGTTCAACCCTGG-CGCCACCTCTAGG----------------------------------------------------CATGAACCCCAAG---------------------TCC------CACACAGATGCCAGGAGGCATGTGGAGAGAGC---CGCCTGTCCTGCCAGGGGGTTCCTG-----CGGGTGTCTCCTCTCTGCAGCTCAGCTAGCTATCCCTGCTCCCAGCGGCCACCTGGGCTGGGGGCTGCAGGTGGGGGCCGAGGACCTGTGCTAAGCTGTTGCTGACAAGGCAGCAAAGACTTTATCTCTCCCTGAGGGGCCATTGGATGGGAAAATAATTGCACAGGAGCCTTCC--CCGCCTCTTGGTTAATTATTTTAGAAAGCCCTGAGGCAGTGACTTCTTCCGTGTGCATTTCTCACCAGCCAG----------------AGAGATGGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
 7 Castor_canadensis-NW_017871110.1-177512_177633       82.6%  45.5%    -------------------------------------------ATCCCCCAGGGGAAGAAGCTTCCAGCCAACATCAGCGAGGATGCGGAGGAAGGCGAGGTGTCTGACGAGGACAGTGCAGAGGAGATCGATGATGACTGCAAGCTCCTCAATGGGGATGTGAGTGAGGGAGGGGCTGGGAGTGAGGAGACAG----------------CGGCCCCCAAGAAAAAAGTTAGG----------------------------GAGGGAGGCTC---TTGGAAGGGAGG-------------GAGATGCCGAGCTTGGTGTACAAAGCTGCCTAGCTACTGGGGATGTGCTTGACT----GG-GGCCTGTGGATCTGTGCCCTCCA--------------CACAAGTCACGAACCCCT--GTTCCCCATGAGTGAGCCATCCATACACCTGCTGGTGTT--CTGTTTGGGTTCCCATTTCTGAGCTAACT-CTTGGACATTTTCCACTACACTGGCCTAGTCTTGGCTCTTC---AGGG--AGGGGGCAGCACTGAGGAAGGGG-----TCTATCCCGGGTTCCA------------CACCATTTCTACCCATATCAGTCATCACTGGG-CTCTGAATCAGAAT-ACCCCAGCTTCCTGGCCAATCCCAGTTGGACTCTGGAT-----------AAGTCAGTGGTCCTGTC---------------------------CAGTTACCCCTGTACCCAACACCATCC-CTGCTTCTAAGCAACACCAACTCCAAGGCTGTCTTTATGCTGAGA-CCTCCTGAAGGAGGAGCCTGCCTAGCT-CTGTGAGGGTCCCACTAGTGGTCACCTCCAGAGTGCCCTCATGTCCTCCTCAGTGCAGCTG----GCCCTGCCTCTGGGCTAGGGGCTGCAGAGGGAGACTGAGGAGTCTGCCAGGGCCTTGGCTCACAGAGGC----------------------CGGGGGCTCTTTAATTGGCATC--TTCTCTCCTCTGGGCACTGCTCTGAGCTGTTGCTGCTTCAAGGCATCAAAGATTGTATTTCTCCCCCAGGGGCCATTGGATGAGAAAATAACTGTGCAAGAGGCTTCCTGGCCTGGGCTAGCTAATTGCTTCAGAAGGCCCCGAGGCGGTGGAATTCTTCCTGCTTTGGGTGTGCCTGCCGTGTCT--CTGGTGACCCAGAGTGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
 8 Trichechus_manatus-NW_004444058.1-176241_176373      83.1%  35.3%    -------------------------------------------CTCCCCCAGGGGAAGAAGCTCCCGGCCAACATCAGTGAGGACGCTGAGGAGGGCGAGGTGTCTGATGAGGACAGCGCCGATGAGATTGATGATGACTGCAAGCTCCTCAATGGGGATGTGAGTGGGGGTGGGGGCCGGGATTGG---GGGCGGGGCCAGGGGAGGGCCAGGGAAGCCCTGGGTGGG--------GGGCAGGGGTCCTGCAGCCTGAGGAGGGGCTCATGTCCCTCCTGTCAGTGGAAGTCAGGAAGGAAGGCACCTGGAGTGAAGAACACC--AGGCCAGGAGCTGGGG----GGTTTCCAAAGCTGGCCA----------------------------------------GGTCACCTCTC--------------TGCCCACTCCCCCACACCTACTGGAGTGTGCACTCTGCATTCCTGGT--GGGGCTGACCCTTGGGGTGGTGGACACATGTCTGCTTGGGGCCCCTCTCGGCTTCCATTTCTAAACTGACCCTGT-----------G-GG-AACCATTCACTCAACCTCCTGCGACATCCCCTTGGTGTCCTTGGCAGTTGGTCGTAG-------CATGGGGCTCAGACA-------------------ACCCCACCCACACC----TGTACCA---GCCAGGCTCCAAC------CTGGGTC---------CCTCTCCCCATTCCTTGCCTCTCTGGCCAACCCTGGCTGAACCCTGG-GACGGGGGCACCCTGCCCAGCCACCGTGGGC-CCAG---CACTGGCCCCACCTC-------AAGGCGTGAACCCCAAG---------------------GCC------CAC--AGAT---------GCCAGGACGCGTGC---CACCTGCCCTGTCAGGGGGTTCCTGTGGGTGGTTTCCACTCTCTCTGCAGCTCAGCTAGCTATCCCTGCTCCCAGCGGCCGCCTGGGCTAGGGGCTGCAGGTGGAGGCCGAGGATCTGTGCTAAGCTGCTGGTGACGAGGCAGTGAAGACT--ATCTCTCCCTGAGGGGCCATTGGATGGGAAAATAATTGCACAGGAGCCTTCC--CAGCCTCTTGGTTAATTGTTTTAGAAAGCCCTGAGGCAATGGATCCTTCCGTTTGCTGGATGGCTGTGCATT-TCTC--ATCAGCCGAAGAGACCGC---ACAGCTGCAGTCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
 9 Tursiops_truncatus-NC_047034.1-182722_182879         75.0%  27.5%    -------------------------------------------CTCCCCCAGGGCAAGAAGCTCCCAGCCAACATCAGCGAGGACGCTGAGGAGGGCGAGGTGTCTGATGAGGACAGTGCAGACGAGATCGATGAGGACTGCAAGCTCCTCAACGGGGATGTGAGTGGGGGTGGGGGGCTTTGGGGGCCGGTGGAGCT--------GCAGACCTGAACAGCCAGCTCAA---G----CCTCGT----AGAAGGGAGGTGGCAGGGACAGAGG------GGCAGGGGG-------------CAGATTCTGAGGGTGATTTGCAAAGCTGCCAGGCTGCTGGGCACCCCCCTGCCCAGC----CCTCCACACAGGG-------------------------------CACGAACCCCG--AGTTCCCAGCTAGCGGCTGTCACCTCTTCTCAGAGAGTCGCTGGGACCAG----GGGCAATGCTGGGAGGCTGAGGCTGAGGAGTCCACAAGGGC-TTTGAGCAGCC--------------GAGCGGCAGGCGGGGGTGGGGGTG---GG-GACGCTCTAATTAGCCTCTTCCCTCTTCTGGGTA---------------------------------------CCGCCAAGGTATTATTTCTCCCTGAGGGGCCATCGGATGGGAGAATAATTGTGCGGC--------------------TGGCTAAT---TGTTTTAGAAAGCCCTGAGGCAGTGG------------------ATTCCTGCCGCTCTGGGTGGGTTTGCAGGTTTCCCTGGAGCAGGTTTCCCTGCCTGGCCAGGGGTGATAGTAAGCCCTCGGTCTGTGGTGGCCACCTTGCACCCACTCCAGCCTGGCTGG----------GCATGCG------------GGTGCCCA--------------------GATG-------------------------------------------CCCAA--GGCCCAGGCCCTG----------CCTGG--AG-----GGTTCCAGTTGGTCAGGGCCAC-GCTGGGG-TCTGTCCCCAC------------CCCATCCATCTCCTTGAGGTGCACG----GTGGCTGGTGG-------TGGGTTCCCAGATC-------CTGAG------------------CT----GCTGAGCGGCT--CTCAGAGC--CCAGAGCGGCCGCCGGGTGCCCGGTGAGCGGTCCACTTGGTCCGGCGGGCAGCATCGTGCACCTGAAGGAGACAGGTGTTAGAATCAGATGGGCCTGGGCTCAGGGCCTGCTCGGCACTGTCTGAGGCCCCGGGACAAATCACATGCCGGGGTGCACAGCAAG--------GTGA---------------------------------------------------     
10 Elephantulus_edwardii-NW_006399795.1-175624_175750   82.6%  33.6%    -------------------------------------------CTCCCCCAGGGGAAGAAGCTCCCAGCCAACATCAGTGAAGATGCCGAGGAGGGCGAGGTGTCTGATGAAGACAGTGCCGACGAGATTGACGATGACTGCAAGCTTCTCAATGGGGATGTGAGTGGGGCCTGGGTGGGATGGGAGGTGAGGACGGAGCA-----GAGATGGGACAGCCCTGGGCTGG--------AGGTGGGTGGTCTTCATCCTGAGGAGGGGCTCATGTCTCTGCTGTGGAAG----TCAAGAAGGGAGGTGGCTGGACAGGGGACATAG--A-GACAGGAGCCATGG----GAATTCCCAAGCCGGCCAGGCTGCTGGTC----------------------------------CATCCC--------------TGCCCACCCCACTGCCTTCACTGGAACGCGTGCTCTGTGTTGCTTGT--GGCACTGACGTCAAG-GTGAAGAACGCATCTCTTGGTTTATCTGATGAT---TATTAGCAGTGAAAAGTCCCTGGCCTCAGACCACC-CT-ACCCATACATACCAGCTGGACTCCCGCCCAAGTCCCCTCCCCAGCTCTGGCTCGACCCTGGGATGGGGGTATTCTGCCCAGCTACCTGGTCCCAGCACTGGCCCCACCCAAA----GG------------TGCTCCCAG------AGGACTT---------CATAGGTGCAG---AGGTATCTATGGAGAGACCCCCTTCCCCACAGGGGGCCCTCTTGAGCTGT------------------------------CCCTTCTC-------TCTGTAGCTCTCCTAGT---------------------TTC-----------TGCTCCTTGTGGCCACCTGGGCTGGGG---CCCGTCGAGTGGAAGCTGAGACGTCAGCCAGGT------TCTCACACGGCA------------TTGGGCTGGGGGCTCTGTAATTAACGCCTCGCTCTCATGGGTGCCTCTGCGCTGAGCCTGAGCCGCTGCTGACAAGGCAGCCAGGACTGTATCTCTCCCCAAGGGGCCATCGGATGGGAAAATAATTGTGCAGGAGCCTTCC--CAGCCTCTCGGCTAATTGTTTTAGAAAGCCCTGAGGCAGCGGATCCTTCCGCTTGAGGGGGGTGGCTGTGTGTTCTC--ATCATTCAAGGATTTGGC---ACAGCCGCAGTCCTCAACGTCCACTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
11 Equus_asinus-NC_052181.1-193783_193923               76.0%  27.1%    ------------------------------------------CCTCCCCCAGGGCAAGAAGCTCCCAGCCAACATCAGCGAGGATGCTGAGGAGGGTGAGGTGTCTGATGAGGACAGCGCCGACGAGATCGACGACGACTGCAAGCTTCTCAATGGGGATGTGAGTGGGGCTGTGGGGAGGGGGGTTCTCCTTGGGAGGGGGCGCTGCAGCCCTGAGGAGCAGGGGCAT---C----GCTGTGCTGTAGGAGAGAGGGACATCAGG----------------------------------CAGGTGCCGAGGGTGGTTTGCAAAGCCACCAGGCTGCTGCGCACATGTTCAGCCTGG----GGCCAGTGGGGCCC----CCTC---CCTGCTCCTCCACACAGGACACAAACCCTG--AGTTCCCAGCTAGCGGCCTGTCACTTCTCCATTGCGGCAGCCCGCTTGGCTTGGGGCTGAGGGCTGCACGGGGAGGTTGAGGAGTCAAGAAGGGC-CGGGTACCGCC---------------------------------GGGCT---GG-GGGCCTCTAATTCGCATCTTCTCTCCCCTGGGTACTGCTCCAAGCCGCTGCTGTGAGGCAGAGAAGGCATTATTTCTCCCCACATTATTTCTCCCTGCGGGGCCATCAGCTAGGAGAATAACGGTGCAGGAG--CCTCCT---GGCCATGCTGCTAAT---TGTTTTAGAAAGCCCCGAGGCAGCGG------------------GGTTCCTTCTGCTTTGGGGCCAGTGCATAG---C---------------TCCATCGGCCCAAGGTGACCATAAACCCACGTTCTGTGATGTGTACCTTGCACCCACTCCAACCTGGGCCA----------GGGACTCCCAGACACCCAAGGCCCGGGCCCTGCCCTGGATGTGTCCAAAATCAT--TATGGCCACACT---------TGGGGCTGCCCAGGGCGGGGAGGGTACC--------T----------GAAGGCCACCCTGACCAGCCCCTGGCACC-AGCCAGCCAGGCAG-TCTGTCCCCGTCCCTG-------CCCAT------CCCTGTGAGGCGCATGG--TGGCGGGTGG-------TGGGATCCCAGATC-------CTGAG------------------C----TGCTGAGTGTCT--CTTGGAGC--CCAGAGAGGCC----------------------------------------------------------------------------------------------------TCCAGGTGTCCTGACCTCCTCCTCCAAGGCCCACT------------GGGCT--------GGGCGCCC-----------------------------------------------     
12 Mus_caroli-NC_034573.1-179946_180070                 81.2%  29.0%    -------------------------------------------TTCCCCCAGGGGAAGAAGCTCCCTGCCAATATCAGTGAGGATGCGGAAGAAGGCGAAGTATCTGATGAGGACAGTGCTGATGAGATCGAGGATGACTGCAAGCTCCTCAATGGGGATGTGAGTGGGAGCCCAGGCTCTGCTTGTAGG-----------------GAACCTGGAGTTGGCCCCCAAC--------ACCCAAGACCAATTCTCAGCACAAAGGGGATTTAT---TTACCCCAGAGGGAGAGAGGGC----AGGGAATCAGAGACAAGGACAGGAGATGGAGGATGAGGGAGAAGGGGAAGGGAACA--AGGGAGGGGGCAAGGG----GTATCTGTCCTGGGGGGGACAAAGGACTG-CCTCTG---GATAGAGAGGAGACAGACAGACAGATGTGGCCCATAGGCA-AATGGTGGTTTACAAAT-------GTAA----------------------------------------AAAATAAATAAATATGAGAAACCCCGTGTTAGGATGAGACGTTTGATTTTAATTAGGCCTGTTAATTAGGTGAGTCA-AATGGGGCTTTTGATTGTGGGCCTTCAGTATTGTGATAGTTGGACCTTGGTGGTCAGCCTCAAGAGGAGGAAGTGGCCAAAAAAAAAAAAAAAGGGAACAG----------A-------------CCTTGGTGGCTAGCCTTAGGAAAGTAATCTAATGGATTTTATCAAGGCAGAGGGAACTGGGGAGAAGGGCAAGG------------------CCTGCCAGAC---------CCAGGCTGACCATGCTCAGGCTG--CCAGACCCAGGCTGGCCATGCTCAGGCTGGCTG----GAGTCCCTTCAAGGGTGGGAAACCTATG-------GATCTGAGGAGCAGCCTCTTGTCCTGGT-------CGCCAGGATCAGTGAGGAAGGCTGGCAGCAGGAAGAGAGGACATACGGTAAATGCTGTGGTGTTACAAAGCCTCAGGCCCTAGGGAGGCAGAGAAAGGTGGATCTCTGTGAGATT--------GAGGCCAGCCCTGTTTACAAAGTGAATTCCAGGACAGCCAGGGCTATTGCATAGAGA-AACCCTGCCTTGGAAGAGAGAGTAAGGAGTGAGGAGTGGGGGAGGGGACC--ATGGGGGA--GG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
13 Odocoileus_virginianus-NW_018338731.1-195426_195547  76.0%  26.8%    -------------------------------------------CTCCCCCAGGGCAAGAAGCTCCCAGCCAACATCAGCGAGGATGCTGAGGAGGGCGAGGTGTCTGATGAGGACAGCGCAGATGAGATCGATGAGGACTGCAAGCTCCTCAATGGGGATGTGAGTGAGGAGGGGGGACCTTCTTCCCA-----GATCGGGGAGCCACAGCCCTGAAGGGCCAGCTCAT---G----GCTTGGTTGTGGGATGGAGGCAGCAGGGACAG--A------GGGGCATGG-------------GAAAGCTTGAGGGTAAGTTGCACAGCTGCCAGGCTGCTGGGCATGCAGTCAGCCTGG----GCCACAGGAGGCCC-----CCTGCCCAGCCACTCCCCCATAGGATACAAATCCCG--AGTTCCCAGTGAGTGACTGTCACCTCTTTTCCCAGCATCATGAGACTGGG------------GCAGTGCTGAGAGGCTGAGGAGTCAGCACCAGC-CTCCAGCAGCAGAGGAGTGGGCCATGGGGAGGTGGCCATGGGGAGGTGG---GG-AGGCCTCTAATTAGCATCCTCCCTTTTCTGGGCG---------------------------------------CTGCTGAGGTATTATTTCTCCCTGAGGGGCCATCGGATGAGAAAGCAATTGTGTGGA-G--CTCTCG---GCCCTGCTGGCTAAT---TGTTTTAGAAAGCCCTGAGGCAGTGG------------------ATTCTTCCCGCTCTGGGTGGGCCTGCACATTTCC---------------CTGCCTGGCCCGAGGCGACGGTAAACCCTACATCTGCACTGGCCCCTTTGCACCCACTGTACCCTGGGTGT----------GGGGGTGCCCAGATACCCTGCCACACT--GTGGCTGCTCCCCACCCCCATTCAT--CTCCTCCAGACA---------CAAGGTGGCTAGTGGTCGGTTTCCGATCTTGAGCCGC----------CCCGAGCACA----TAATG-----GCAGCTGGGCGCCCATGATT-CGTCTGCGGGTCCCAC-------AGCAACGCGGTGCAGCTGAAGGA--------GGCGGGTGT-------TGGAATCAGCTGGG-------CCTGA------------------GCC--TGCTGGCACCAT--CTGGGGCC--CCAGGACAAAT----------------------------------------------------------------------------------------------------TGCACACCTACTGTGCACCCCGGGGGGAGCAGGGT------------AGGGG--------GTGAGGACCAGCACG----------------------------------------     
14 Chinchilla_lanigera-NW_004955486.1-180390_180508     81.0%  34.1%    -------------------------------------------TCCTCCCAGGGGAAGAAGCTCCCAGCCAACATCAGTGACGATGCGGAGGAAGGCGAGGTGTCTGATGAGGACAGTGCCGACGAGATCGACGAGGACTGCAAGCTCCTCAACGGGGATGTGAGTGTGTGGGGCACGGAGGGGTGCAGGAGGCTGC-------CTCGGGGGCCCATGTGGCTGGGGTT-------------GGTGGGGGCCACCCTCTGCCTGCCCCACCCC--ACCTGTCACAGGAGCCCCTGCT-----GCAGCCATGGGACACCCCACACGGTTTGTGACCCCTTCCAGTGCCCACTCCTGA-----GCTGACTCGGGTGCTGCTCGCTGCCT-GGCCCCATCCTCTGGCCCCTGAGCTCA-----------CTGGGGCGT------------------GGCT--CCCACATGGTCCCATTG-----GCACCCTTCTGTGCTGGCCTCTGCCCAGAATATCCTGGATTCCAGCCAGTTCCGGGCCAGCTCCAGCCCACGCGGGGAGGCTCCTGGTCCTGCCCAGCGGAG--CCTGGCCCAGCCTCAGCCCCACTCGAAGCTGCACCA----------------------ACCCTAGTCGAGAG--CTCCTGCCAGGCGGGCCAGCCAGACCCAGTGGTGGCTGGCTTCCCCA-G----GGCTGGCTTGGT----------CCCTGCGGAG-GGAGGGAGGCT---------GGCCGAGGAGGCTTGAGGACCCTGGGTGCAGAGGGCTG-------GGGGTGGAACTGGCTTTCTCTC-------------------GCCTCCGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCTCTGATCTGCTGCTGCTGCTGCTAGGAGGC--AGCGGAGCCTATTTCTCCCCAAGGGGCCATTGGATGGGAAAATAATTGTGCAGAAGGCTTCCC-GGCCAGGCTGTTTAATTGTTTTAGAAAGCACTGAGACAGCAGAAATCTTCCCGCGCTGGGTGTGCCCGCGCATGCCT-CTGCCTGGCTCCTTGGTGG---AAAACCCATGACCACGATGTCCGCTTAGCGCTCACTCCAGCCCAGCCCC---------AGGCTCCCCCAAAGTCTGCTCTGA----CCCCTGCCCATCTTCTTGAGTATGTGGTGGCCGGGGTGGGTCCCTGATCCTCTGCTGCCTGCT-----------------------------------------------------------------     
15 Cricetulus_griseus-NW_003616165.1-55979_56103        81.8%  42.7%    -------------------------------------------CTCCCCCAGGGGAAGAAGCTCCCTGCCACTATCAGCGAGGATGCAGAAGAAGGCGAGGTGTCCGATGAGGACAGTGCCGATGAGATTGATGACGACTGCAAGCTCCTCAATGGGGATGTGAGTGGGAGCCAGAGGCTTTTATGGAAGTCCCGAGGGTGGGAAGCCTGGGGTCGCCAAGAGCAGCCTCTTGCTTGCCCTGGTTGCCAGGATGAGTTAGGAAGAGCAACAG---CTGGGAGGGATGGACATAAGGTAG-ATAGATGCTGATGTGGCGTGCAAAGCTGCCTGGCTTCTGAGGTTGTGCCATGCT----GG-GGTCTATGCTGTTCTTCTGCCTGCTTGGCCTCCTGCACAAGAGACATGAATCCC---ATGACCCACCAGCAGGCCAGCCGCACAGGCACTGCAGTCC-TAGTTTGGCTTCCATTGCTA--GCTGACT-CTTGGGTTTTGTCTACCATGCTGACCTAGTCCTGTTGGCCCTCCAGTGAGTGGTGGCAGCACTGAGCAGGAGTAGGGGGTGCACTTTGGG---------------------------------------CCCCGCATG-CTTTAACTCAGAGC-CCCTCAGTTTCCTGGCCAGTCCAAGCTGGACTCTGGGT-----------AGTCATACCCAGCC------------------------------------ATCCCATGCCCAGC-----------------ACCAGTACCAACTCCAAGGCCAACTCCAGCCTTGGA-CTTC--------------CAACTCCTG-TATGGCAAGTCCCTCTAGTG----------------------------------------G----TCACTTCTGCATGGCTGGGGCCGGTGGAGGGAGCCTGAGCAGTCTGTAAGAGCCTCTACTGGTGGGAATCGGGGCTGGGGAAGCTGAGTGAAGCAGGTTCTATAATTGACATCTCTCTTCTGGGCACTGCTCATCTACTGCTCTCAGCGGCTGTGAAGCAGGGAAGACTTTATTTTCCCCCAAGGAGTCATCAGATGGGAAAATAATTGTGCAGGAGGCCTCCAGGCCAGAGCTGGCTAATTGTTTTAGAAAGCCCTGAGACAGCAGATTCTTCCTATTTTGGGTGTGCCTGCACATGTCT--CTGGCTGGCCCAGGATGACTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
16 Mus_pahari-NC_034595.1-180676_180800                 81.5%  27.4%    -------------------------------------------TTCCCCCAGGGTAAGAAGCTCCCTGCCAATATCAGTGAGGATGCGGAAGAAGGCGAAGTATCTGATGAGGACAGTGCTGATGAGATGGAGGATGACTGCAAGCTCCTCAATGGGGATGTGAGTGGGAGCCCAGGCTCT-GCTCGAGGCCCTGAGGCTCGTAGGGAACC--TGGAGTTGGCCCCAAA--------CCCCCAGACCGATTCTCAGCACAAAGGAAATTTAT---TCGCCCCAGAGGGAGAGAGGGC----AGGGAATCAGAGACGAGGACAGGGGATGGAGGATGAGGGAGAAGGAGAAGGCAACA--AGGGAGGGGCAAGGGG----TAT---TTGTCCCGGGGGACAAAGGACTG-CCTCTG---GATAGAGAGGAGACAGATGTGG--------CCCATAGGCA-AATGGTCGTTTATAAGT-------GCAA---A---AAAATA----------------------------------AAAAATATGAGAAACCCTGTGTTAGGATGAGATGTTTGGTTTTAATTAGGCCTGTTAATTAGGTAAGTCA-AAGGGGGCTTTTGATTGCTGGACTTCAGTATTGTGATAGTTGGACCTTGGTGGTCAGCCTCAAGAGGAGGAAGTGACCAA---------AAAAGGGGACAG----------A-------------CCTTGGTGGCTAGCCTTAAGAAAGTAATCTAACGGATTTTATCAAGGCAGAGGGAATTAGGGAGAAGGGCAAGG------------------CCTGCCAGAC---------CCAGGCTGGCCATGCTCAGGCTG--GCTAGCG---------------------------------TCCCTTCAAGGGTGGGGAGCAGCCT-------CTTGTCCTGGTTTCCAGGATCAGTGAGGAAGGCTGGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGGGACATACTGTAAATGCTGTAGTG-TACCAAGCCTAAGACACTAGGGAAGCAGAGGTAGGTGGATCTCTGTGAGATC--------GAGGCCGGCCCTCTTTACC-AGTGAATTCCAGGACAGCGAGGGCTACTGCACAGAGA-AACCCCGCCTTGGAAGAGAGAGCAAGGAAGGGAGGAGTGGGGAGGGGGAC--AGGGAAGG--GG--AGGGG--------------------------------------AAGAGGGA---------------GGGGGAGCA----------------------CAGGG-----AGA----------------------------------------------------------------------------------------------------------------     
17 Oryx_dammah-NW_024070205.1-183173_183294             77.0%  28.4%    -------------------------------------------CTCCCCCAGGGCAAGAAGCTCCCAGCCAACATCAGTGAGGATGCTGAGGAGGGCGAGGTGTCTGATGAGGACAGCGCAGATGAGATCGATGAAGACTGCAAGCTCCTCAATGGGGATGTGAGTGAGGAGGGGGGACCTTCTTCCCA-----GATGGGGGAGCCACAGCCCTGAAGGGCCAGCTCAT---G----GCCTGGTTGTGGGATGGAGGCAGCAGGGACAG--A------GGGGCATGG-------------GGCAGCTTGAGGTTAAGTTGCACAGCTGCCAGGTTGCTGGGCATGCAGTCGGCCTGG----GCCACAGTGGGCCC----CCCTGCCCAGCCACCCCCCTACAAGACACAAACCCTG--AGTTCCCAGTGAGCGACTGTCACCTCTTTTCCCAGCATCGTGAGGCTGGG------------GCAGTGCTGAGAGGCTGAGGAGTCAGCACCAGC-CTCTGGCAGCAGAGGAGTGGGCCATGGGGAGGTGGCCATGGGGAGGTAG---GG-GGTCCTCTAATTAGCATCCTCCCTTTTCTGGGCG---------------------------------------CTGCTGAGGTATTATTTCTCCCTGAGGGGCCATCGGATGAGAAAGCAATTGTGCAGA-G--CTCTTG---GCCCTGCTGGCTAAT---TGTTTTAGAAAGCCCCGAGGCAGTGG------------------ATTCTTCCCGCTCTGGGTGGGCCTGTGCATTTCC---------------CTGCCTGGCCCGAGGCAACGGTAAACCCCACATCTGCACTGGCCCCCTTGCACCCATTGTACCCTGGGGGT----------GAGGACCAGCACCGTGATGCAGG-AGT--GAGCCTGTGGTCAGTG-------CT--AAGTGTCAGAGG---------AGAGGGGGATGGCTCTGGCCCTGCCAAGACCCCGCAT----------GCTGTCCACACTGCTGCCGGAGGCGGGGGACGGAGGCCAGTGAT-TGGCTGCCTCTCGCAGG-CCTCCACCAACCGCAAACGTGTGGAAAACATTGCCAAGAGGAAAC-------TGGATTCCCTAATG-------AAGGA------------------GTCCAAGATTCGGGACT--GTGAGGAC--CCCAGCG-ACT----------------------------------------------------------------------------------------------------T-CACCGTGTCCACGCTGCCCCCACCTGGCAAACT------------TGGG----------------------------------------------------------------     
18 Orycteropus_afer-NW_006921723.1-175460_175583        80.9%  29.0%    -------------------------------------------CTTCCTCAGGGGAAAAAGCTCCCGGCCAACATCAGTGAGGATGCCGAGGAGGGCGAGGTGTCTGATGAGGACAGCGCTGATGAGATTGATGATGACTGCAAGCTCCTCAATGGAGATGTGAGTAGGGGCGGGACCAGGACAGGGCA---------------------AGGGGAAGCCCTAGGCAGG--------GAGTGGGAGTTCTGCAGCATGAGGAGAGGCTCATGTCCCTGCCATCAGTGGAAGTCAGGAAAGGAGTTTACTGGAGTGGAGGACATT--GGGCAGGAGCTGGGGGCGGGGCGTTCCAAAGCCAGCTTGGCTGCCAGGC---AC--ATACTGATCCTGGGCCC-----ATTGGGTCCCC--------------TGCTCATCTCTCTACACCCACTAGAGTGTGCACTCTGCATTCCCAGT--GGGGCTGACCCTAACGGGGGCAAACACACAGCTGTTGGGGGCCTCTCGCAGCTTCTATTTCTGAACCGACCCTGTGGAAATCGTCCA-CC-AAACCTGCAACATC-CTCTTGGCATATGTTCTGGCTATCTAG----------TGCCACTCTGACAGGAATGTAC-CACAAGTGGGATGGCTTGAACAAACAGAAGTTTATTC----TCTCACAGTTTAGAGGCTTTAAG------TCGTAGT---------TCAAACTGCCAGGCTCTAGGGGCTGGGTGAAAGCCCTTCAACCTTGGGCTTCAGCTCTGCCTCC------------------TG---CT-----CCCGGCCC-------ACTGAAGCTAGAGTCTT---------------------TTCTTCATTCAGACAGCTGCTGGCTGCTGAGGCTGACAAGCCCAAGGTTGACAAGTCAAAAGGTACAGTCCCGATGTTA----CCAAACCACATGGTACGTCACTGATTCAAGTCCATTGGAAGTCCCAAGATAGGCAGAGCATG----------------------TCAGGATGCTGAACAACGACTC----------GGCTACATGCAGGGTTCAAGCATGCCA---TAAGCTAGAGACTGTTCCCC--AAGGCTTTTCCTTATATACAGGAAGCAGA---------CCACATCCTTAAGGCAGCTACTCAGCTGCTCACAGTAGA--TTCCACCATGGAGATGA-------T-TACCAGTCTCATCAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
19 Camelus_bactrianus-NW_011514262.1-181998_182123      69.3%  23.6%    -------------------------------------------CTCCCCCAGGGCAAGAAGCTGCCCTCCAACATCAGCGAGGATGCTGAGGAGGGCGAGGTGTCTGACGAGGACAGCGCAGATGAGATTGACGATGACTGCAAGCTCCTCGATGGGGATGTGAGTGGGGGCGGGGCCTCCTTGAGGGCAGGGGAGCT--------GTGGCAAGGCCAGGCGAG-----------------------------------------------G------GCCACTGGG-------------CAGATTCTGAGGGTGATTTGCTAG-CTGCCAGACTGCTGGGCATGCACTGGGCCTGG----GCCTGGG-------------------------------------GCCCCTGCCTG--CGTCCCCC-----GCTCTGTCAGGAGCTCCGAG----C-------------------------TGCTGGGCCGGGGCTGGGAACTGCG---------CTCCGGGCTG--------------TGGAGTCAGCAGCAAAGAGCTGGA---GG-GGCTCTCTAGTTAGCATCTTCCCTCCTCTGGGCG---------------------------------------CTGTAAAGGCATTATTTCTCCCTGAGGGGCCATCGGGTGGGAAAATCGCTGTGCAGGAGCGTTCCCG---GCCAGACGGGCTGAT---TGTTTTAGAAAGCCCTGAGGCAGCAG------------------ACCCGTCCTGCTTTGGGTGTGCCTGCCTGGTCTCTGCTGG-----------------GCCGCAGGCGAGGTAAACCCCCTCTCTGTGATGCGCACCTCGCACCCACTCTGGCCTGGGCGT----------ACCCTGGGCCCTGCCTGGAGGAGTCCA--------------------GGTTTGT--CAAGGCCACACT---------GGGGGCTGTCTCAGACAGTGAGGGCGCCCGGAGGCTC----------CCCAG---G-----CCAGCCCCTGGCACCGGCCCACCAGGCGGG-CTGCGCCCACC------------CCCATCCATCTCCTCGAGGCACATAGTGGCTGGTGGCGGG-------GGGGTTCCCAGATC-------CTGAG------------------CT----CCTAAGCGGCT--CTCAGAGC--CCAGAGTGGCTGCCGGGCGCCG-ATGAGTGGTCTGCTGGGCCCTATGGGCAGCACTGTGCAGCCTGGGGAGGCAGGTGTCAGGGTG-GACAGGCCTGGGCCCAGGACCTGCTCAGCACTGTCTGTGGTCCTGGGGGCAAACCGCATCCTGAGAGGCAGATGGC--------GTGAGGACCAGCAGCGGGACACAGGTAGGAGT-------CGGTGG----------     
20 Galeopterus_variegatus-NW_007727608.1-246692_246821  82.9%  42.5%    -------------------------------------------CTCCCCCAGGGGAAGAAGCTCCCGGCCAGCATCAGCGAAGATGCGGAGGAGGGAGAGGTGTCCGACGAGGACAGTGCCGATGAGATTGATGACGACTGCAAGCTGCTCAACGGGGATGTGAGTGGGGCTGGGACAGGGACATGGGACAGCAG---------------------------------------------------------------------------------------------------------------TGCAGGGGGGTCTGCAAAGCCCCGGGGCCTGTGGGGCCCCT----------------------------------------------------GCTGCCTAC-CCCTCCA--CATTCCCAGCCAGTGGCCGACCTCACGCCTGCCGGTGGC--CTGTCCTGGTTCCCGTTTCTGAGCCGAC--CTGGGGTGCCGTCCATTCCCTGTGCCTGGTCCTCTTGACCCCTCAGCAAGCGAGGGCAGCACTGGGGGACAGGG---GTCCACCCTGGGTTCCA------------TGCCATTCCCATCTGCACCTGTGCCTGCTGGG-CTCTGACCCAGAAC-ATTCCAGCTTCCTGGCCTCTTTCCTGCCAAAACCAGTTGGACAGTAGGTGGCCAGTGGTCCTGCT----------------------------CAGCCACCTGGTGCCCAGGACCAGCCC--CACCTCCAAGCAGCATCAACCGCCAGGTCAACCCTGATGTTGAG-AACT-------------------CCAG-TAGAAAGGGCCTGCCTGGCCCTGCGGGGGTCCTGCCAGTGGTCACCTCCTCACTGTGGCTG----GCCAGCTGCTGGGGATGGGGGCTGTGGAGGGAAGCTAAGGGGTCAGGGAGGGGCTT-----------------------------------GGGGGTCTCCATAATTAGCATCTCTCTCCTCT--GGGCGCTCTCTGAGCTGCTGCTGCCGCAGGAGGCAGCGAAGACCTTATTTCTTCCCGAGGGCCCAGTGGCTGGGAAAATAATCGTGCGGGAGCATTCCCAGCCACAGCTGGCTAATTGTTTTAGAAAGCCCTTAGGCAGCAGAATTCTCCCCATGCTGGG-TGTGCCTGCGCACTT--CCCTGCCGCCCGAGGTGATGGGAAACCCACATTCTGCGATGTCCATTTTGTGCCCACTCTAGCCTGGGCAC---------CACTGGTGT------------------------------------------------------------------------------------------------------CCGATGGCCAAGACCCATGCCCCG-----CCCTAGAGGGCCATGC     
21 Heterocephalus_glaber-NW_004624818.1-181204_181325   79.0%  33.0%    -------------------------------------------CTCCCCCAGGGGAAGAAGCTCCCGGCCAACATCAGCGAGGACGTGGAGGAGGGCGAGGTGTCGGATGAAGACAGTGCTGATGAGATCGATGAGGACTGCAAGCTCCTCAATGGGGACGTGAGTGTGAGGGGCAGAGGGGCACGGTGCAGGGTTCGCTGCAGCCTGGGGGCGCACATGGCCTGGCCG-------------CCCCA----------------------------CCAGAGCCCAGGAACCCTCG-----------------------TCCCACCTGGCGGACTCCCTTTCAGTGCCCACTGCTGA-----GCTGACTCAGGTGCTGCTCATTGCCTGGGCCCCATCCTCCTGGCCCCTGAGCTCTTGGGGTGGCACTAGGGTGC-----------------GGGTC--CCACGTGGGTCCCACCC-----ACACCTTCCTTTGCTGGCCTCCACCCAGAATATCCTGGACTCCTGCCACTTCCTGGGCAGCCCCGGCCAGGCTCTGAGTGGCTG----------GGGCAGAC--CCTGGCCCAGCATTAGCTCCACTCCAGGCTGCACTG----------------------ATCCCAGGGCTGAGAGCTCCTGCAGGGCGAGCCCGCCTGGCCCCCAGCG------------------------GTGTCCTC----------ACTGCCTCCC-CAGGGGAGGGA---------GACTGAGGAGTCTTGAGGGCTCTAGCTGCAAGGGCCTGGGGCGG-GGTCCATAACTGGCTTCTTCTC-------------------CCCCT----C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTGCTCTGAGCTGTGCTGCTGCTGGGAGGC--AGAGAAGCCTATTTCTCCCCGAGGGGCCTTTGGATGGGAAAATAATTGTGCAGGAGGCTTCCT-GGCCAGGCTGGCCAGTTGTTTTAGAAAACCCAGAAACAGCAGAATTCTTCCCGCGCTGGGTGTGCTCTGCAC-ACCT-CTGCCTGGGCCCTTGGTGG---AAAACCCATGCCCGTGCTGTCCTCCTGGCACTCTTTCCAACCCGGGCCA---------TGCTGGGGCCGCCCTGGCAGGGAAGGGCACCCAGCGCAGCCCCAGGACCCTCTGA-------AGTTTGCCCCTCTTCTTGAGTGGCTGGCTCCTGGAGTTCCTGTGGAACTCCTCTG-GCTCCCGCAGGTCTCCAC--------CAACCGG-AA--     
22 Mastomys_coucha-NW_022196900.1-179785_179908         82.7%  26.9%    -------------------------------------------CTTCCCCAGGGGAAGAAGCTCCCTGCCAATATCAGTGAGGATGCGGAAGAAGGCGAAGTATCTGATGAAGACAGTGCCGATGAGATCGAAGATGACTGCAAGCTCCTCAATGGGGATGTGAGTGGGGGCCAGAGGCCCTGCTTGAGGCCCCGAGGGCTGCAGGAAACCCCAGAGTGGGCCCCAAAC--------CCCCAAGACCAATTCTCAGCACAAAGGAGCTTTAT---TTGCCCCAGAGAGAGAGAGGGT----GGGGAATCAGAAACAAAGACAGGAGATGAAGGATG---GAGAAGGGGAAGGGAACA--AGGGAGGGAGGAGGGG----TAT---TTGTCCTGGGGGACAAAAGACTG-CCTCTG---GATAGAGAGGAGACAGACATGG--------CCCATAGGCA-AATGGTGGTTTATAAAT-------GTAA---A---ACGAACAAAACA----AAACAAAGAAAACCAAACCAAAACAAAACAACTGGAAACCCCATGTTAGGATGAGATGTTTGATTTTAATTAGGCTTGTTAATTAGAGGAGTCA-AAGGGGGTTTTTGATTGCTGGACTTCAGTATTGTGATAGCTGA-TTTTGGTGGTCAGCCTCAGGAGGAGAAAGTGGCCAA---------ATAAGGGAACAG----------A-------------CCTTGGTGGCTAGCCTTAGGAAAATAATCTAATGAATTTTATCAAGGCAGAGGGAACTGGGGAGAAGGGCAAGG------------------CCTGCCAGAC---------CCATGCTGGCCATACTCAGGCTG--GCCAGAG---------------------------------TCCCTTCAAGGGTGGGAAGCCTATG-------GATTCCAGGAGCAGCCTCTTGTC---------CTGGT-TGCCAGGAGTGAGGAAAGCTGGCAGCAGGAAGAGAGAACACTCGGTAAATGCTGTGGTG-TACAAAGCTTAAGGCAGTAGGGAGGCAGAGGTAGGCAGATCTCTGTGAGTTT--------GAGGCCAGCCCTGTCTACAAAGTGAGTTCCAGGACAGCCAGGGATATTGCACAGAGA-AACCCTGCCTTGGAAGAGACAGTGAGGGGGAGAGGAGGAGGAAGAGGGGG--CTGGGGAG--A------GG--------------------------------------GAGAGGGA---------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------     
23 Octodon_degus-NW_004524689.1-182198_182316           76.8%  31.0%    -------------------------------------------TCCTCCCAGGGGAAGAAGCTCCCGGCCAACATCAGCGAGGACGCAGAGGAAGGCGAGGTGTCTGACGAGGACAGTGCCGACGAGATTGACGAGGACTGCAAGCTGCTCAACGGGGATGTGAGTGTGGGGGTCCAGAGGGGAGCAGGGAGGCCCAGGGCTGCCTTGGGGGCTCGTGTGCATGTGGTC-------------GGCAGGAACTGC------------------------------------CCTTGCT-----CCAGCCACAGCCCACCCACGAG-GCTGGCG--GCCCCTTTCAGCCCGTTCCTAG-----CCTGGCTCGGGTGCTGCTCACTGCCTGGGCCCTGTCCTCTGGCTGCTGAGCTCA-----------CTGGGGCGT------------------GGGT--CCCACTCAGCTCCCACC-----ACGACTTCTTTTGCCAGCCTTTGCTCAGAATATCCCGGATTCCTGCCAGGTCCGGGCCAGCCCAGCCCAC--CCTGGGGGCTGGTGGTCCTGTCCAGCGGAG--CCCGGCCCAGCCTCAGCCCCGTGCGAAGCTGCACCA----------------------GCCCTGGCCAAGAG--CGCTTCCTGGGCTGGCCTCCCCATGGCCCCTGTGGAGGGAGGGAGGC-------------------------------TGCTGGC-TCGAGGACCCT---------CAGTGCGAAGGGGTAGGGGCAGTGGCTGTGGAAG--AA-------GTGGCTGTGGAAGTGGCTTCTC-------------------GCCACTGGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTCTGAGTTGCTGCTGCTGCTGCTAGGAGGC--AACGAAGCTTATTTCTCCCTGAGGGGCCATTGGATGGGAAAATAATTGTGCA---GTCTTCCC-GGCCAGGCTGGCTAATTGTTTTAGAAAGAACTGAGACAGCAGAAATCTTCCTGTGCCGGGTGTGCTCACGCATGCCT-CTGCCTGGCCCCTTGCTGA---AGAACTCAGGAC-TGTGGGTCTGCTTAGCCCTCACTGCAGCCCAGGCGC---------AGGCTCCTCCAGCGTGTGCCCTGA----CCCCTACCCATCTTCCTGGGCGTGTGGTGGCAGTAGTGGGGCCCTGGTGCTGTGCTGCCACTGGGCATGCTGACTCCTGGAGGCCCCTGGCCTGCAGCA---GTGAAG--------GGACCAG-AGGG     
24 Marmota_flaviventris-NW_023144724.1-180078_180213    82.2%  38.6%    ------------------------------------------CCGCCCCCAGGGGAAGAAGCTCCCAGCCAACATCAGTGAGGATGCAGAGGCCGGTGAGGTGTCCGACGAGGACAGTGCCGACGAGATTGACGATGACTGCAAGCTCCTGGATGGGGATGTGAGTGGCCGGGGGTGGGGGAGCCCTCTGGTCCTGGCTCTGGTGACGACTTAGGAAGACAGGCAGCCG--------------------------------AGGGGTGGCCA---CAGGCAGGGGCC----------------------GAGCTGCGGTGCAAAGCTGCCCGACTGCAGGGAGGCCTCCCACGGGGGCTGGGGGCCCTGGCGGCC------TGCCACGCCCCTCCCCATGAGAAACACAGAACCCG--TGCTCCCAGTGGTGGGCCAGCCCCCCGCCTGCTGGGGTC--CTGTTTTGGTCCCCGCTTCTGAGTTGAC--TTGGGGTGAGATCCACTACCCACCCGCAGTCTGCTTGGCTCTTCAGCAGGTGGGTGCTGAGTCCTGCTGAGCTG------GACTCTGGGTGGCC--AGCGGTCCTGCTCCACCTCCCCCATGCCCAGAACTGGCCCCA-CTCCAAGCAGTGCCAACCCCAGGGCCAAGAGCTCCTGCAAGACAAGCCCGCTGGCCCGGTGGGTCCTGCTGTGGCCCTCCA---------------------------CAGA--GC-----GCTCTGC-----------------ACCTGTTTCTGCAGCCGG----------------------------------------------------------------------------------------------------------------CCTGGCCGCTTGGCCTGGGAGTTGCAGAGGGAGCTCAGGTCTTTGG---GGACCGTGGCTGTGCAAGG-----------------------CTGGGGCTCCGTAACCGGCGCCTCTCCTCTTC--TGTGCCTGGCTCCAG-CTGCGGTTGCTGTGAGGCAGCA----GGACTACTCTCCCCC-AGGG--CTATTGGAGGGAAGATGTTGTGCAGGAGGCTTCCC-GGCCTGGGCGGCTAATTGTCTTAGGAAGCCCCGAGGCAGCAGAATCCGTCCCACTCTGGGCAAGCCTGCGTGT-----CTGCCTGGCCCC-----GGGGGTGCACACCATGATGGTGTGTCCACTTAGTGCCCACTCCAGCAGGGCTCC---------CTCGAGGGG------------------------------------------------------------------------------------------------------TCCAAGGGCATCAGGTCATGCTGGGGGTGCCCTGGTAGGGAAAGG     
25 Peromyscus_maniculatus-NC_056009.1-179015_179255     81.7%  43.5%    ------------------------------------------------CCAGGGGAAGAAGCTTCCTGCCAATATCAGCGAGGATGCAGAAGAAGGTGAGGTATCTGATGAGGACAGCGCCGACGAGATTGATGATGACTGCAAGCTTCTCAATGGGGATGTAAGTGGGAGCCAGAGGCTCTGATGGAGGTCCTGAGGGTGGGAAGCCTGTGGTCCCCAAGAGTAGCCTCTTG----TCCTGGTTGCCAGGATGAGTTAGGAAGAGTGACAT---CTGGGAAGGATGGACATAAGGT----TAAATGCTGGTGTGGTGTGCAAAGCTGTCTGGCTTCTGAGGTTGTGCTGTGCT----GG-GGTCTATGCTGTTCTTCTGCCTGCTTGGCCCTCTGTATAAGAGACACGAACCTC---ATGTCTAACCAGCAGGCCAGCCACACGTCTACTGTTGTCT-CATTTTGGTTTCCATTGCTAGAACTGACT-CTTGGATTTTGTCTATGATGCTGACCTAGTCCTCTTGGCCCTCCAGTGAGTGGAGGCAGCACTGAGCAGGAATAGGGGT-GCCCTTCGGA---------------------------------------TTCTGTGTG-CCTTAACTCAGAGC-ACCTCAGCTGACTGGTCAGTCCAAGCTGGACTCCGGGT-----------AGTCATGCCTAACC------------------------------------ACCCCATGCCCAGC-----------------ACCAGTACCAACTCCAAGGCCAGCTCCAGTGCTGAG-ATCT--------------CCTGTCTGG------CAGGTTCCTCTGGTGGTCATCTCCACAGAGCCTCTTGTATCT--TTACTGCAG-CT----GGTCTGGACCAGGGCTGGGGGCTGTGGAGGGAGCCTGAGCAGTCTGTAAGAGCCTCTGCTAGTGGAGTTGGAGGCTGGAGGAGCTGAGTGGA--GGCAGCTGTAATTGACATCTCTCTTCTGGGCACTGCTCATCCACTGCTCTAAGTTGCTGTGAGGCAGTGAAGACTTTATTTTCCCCTGAGGAGTCATCAGATGGGAAAATAATTGTGCAAGAGGCCTCTGGGCCAGAGCTGGCTAATTGTTTTAGAAAGCCCTGAGACAGCAGATTCTTCCTATTTTGGGTGTGCCTGCACATGTCT--CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
   clustal                                                                                                                                       ***** ** ** *  **.*. ** **.**.** ** **.***** ** ** ***** ** ** *********** ** .* **.** **.***                                                                                                                                                          .          .                                                                                                                                                                                                                                                     .                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         .                                                  .   .             .