Reference sequence (1): Target
Identities normalised by aligned length.
Colored by: consensus/70%

                                                          cov    pid  1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .         .         .         .         :         .         .         .         .         6         .         .         .         .         :         .         .         .         .         7         .         .         .         .         :         .         .         .         .         8         .         .         .         .         :         .         .         .         .         9         .         .         .         .         :         .         .         .         .         0         .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         ] 1320
 1 Target                                              100.0% 100.0%    --------------------------------TATGGGACCAATGTCAGGACCCCAGGGCCATTCAGAGGACAGGGTCC---CCAGTATCTAGGTCAAAAGGATTCTATTTCCCA------------------GCCTATCTATAGCTCCACACTGTACCTTGGT-TTTGTCCACATCA----TTTTAAAACCATGACTTT-----------TTC-AAAC-GTTCCTTTTGTTTTCCTGG------------------AGTTTCTCATTGCCTTTGTTTTTTTTCTTATTGGGGAAAG---CAGCTCATGCTCTCTTTACCAGTCCCTAAGATTCTCCCAGCTCCTTT------------CCCATCCACTCTGTTGCTTTTCAAAGCCATTGACGGGTGGGCCACCTCCCAGAGCTGCTGGTAATCCCAGCTATCCTGGGTTCCTGG--TGAAGACCCCTCCTCATTCAATGGTTTAGATGACCTGGGATCTTGCAGAGGTGGGGCTTACCCATCCTCTGAGGCCCTGGCCTCATCCTGCTCTTTCTGCCTT-GGGGCCACAGGTACCCAGTGATCCTGTCCATCGAAAACCACTGCAGTGTCATCCAGCAGAAGAAAATGGCCCAGTATCTGACTGACATCCTTGGGGACAAGCTGGACCTGTCATCAGTGAGCAGTGAAGATGCCACCACACTCCCCTCTCCACAGATGCTCAAGGGCAAGATCCTCGTGAAGGTGAGTGAGCCCCTGCCCTCCTGGGACCAGCTCACACAGAGTCTCGGG--CCTGCAGCAGTGC---------------------------CCTGCTCCAGACAGGCAGGGGCATCATGCCATCCATGGGCATATCTAGGGGGCTGAGGGCTGGCCACGCTCCTGACCTGGCCTCCATCTCC--CCATGGTGGTCACTCTGGCTCAGG--CCCCTCATGCACATCCAGGCCTTTCCCTT-CACGCTGCTGCAGCCACAGGGAGCTGGCCAGTCTG------------GCCCCTGCCCCATGGCTGAGATGCCAAAACTGAGCTTGAGAAAAGGCCCCTCTCCTTGGCCGGCGGCTCTTTGTGGGTGCCAGGTACTGGCTTCCCAGCATTTTC----------------TCCAGGGCCCC------TCCCATCATGCACCTCC-------------------------------------------------------------------------------------------------------------------------------------------------     
 2 Theropithecus_gelada-NC_037668.1-214315_215099       97.8%  80.7%    -----------------------------------------------CGGGTTCATGCCATTCTCCGGCCTCAGCCTCC---CGAGTAGCTGGGACTACAGGCGCCCGCCACCTCGCCCGGCTAGTTTTTTTTGTATTTCTTAATAGAGACGGGGTTTCACCGTGTTAGCCAGGATGG----TCTCGATCTCCTGACCTC-----------GTG-ATCC-GCCCGTCTCGGCCTCCCAA------------------A-GTGCTGGGATTACAGGCTTGAGCCACCGCGCCCGGCCG---AAACTCATGCTGTCTTTACCAGTCCCTAAGATTCTCCCAGCTCCTTT------------CCCACCCACTCAGTTGCTTTTCAAAGCCACTGATGGGTGGGCCACCTCCCAGAGCTGCTGGTAGTCCCAGCTATCCTGGGTTCCTGG--TGAAGACCCCTCCTCATTCAATGGTTGGG-----GTGGGCCCTTGCAGAGGTGGGGCCTACCCATCCTCTGAGGCCCTGGCCTCATCCTGCTCCTTCTGCTTT-GGGGCCACAGGTACCCAGTGATCCTGTCCATCGAGAACCACTGCAGTGTCATCCAGCAGAAGAAAATGGCCCAGTATCTGACTGACATCCTTGGGGACAAGCTGGACCTGTCATCAGTGAGCAGTGAGGATGCCACCATGCTCCCCTCTCCACAGATGCTCAAGGGCAAGATCCTTGTGAAGGTGAGTGAGCTCCTGCCCTCCTGGCACCCGCTCACATAGAGTCTCGGG--CCTGGGGCAGTGC---------------------------CCTGCTCCAGACAAGCAGGAGCATCATGCCATCTGTGGGCAGATCTGGGGGGCTGAGGGCTGGCCATGCTCCTGACCTGGCT-CCATCTCC--CCATGGTGGTCACTCTGGCTCAGGACCTCCTCATGCATATCCAGGCCCTTCCCTC-CACGCTGCTGCAGCCACAAGGAACTGGCCAGTCTG------------GCCCCTGCCCCATGACTGAGATTCCAAAACTGAGCTTGAGAAAAGGCCCCTCTCCTTGGTCGGCGGCTCTTTGTGGGTGCCAGGTGCCGGCTTCCCAGCCTTTTC----------------TCCAGGGCCCC------TCTCATTGTGCACCGCCTC-----------------------------------------------------------------------------------------------------------------------------------------------     
 3 Carlito_syrichta-NW_007256000.1-145456_146394        94.9%  67.6%    -------GTGCCTGGCTTATGTCT-CCTTCTTTATGGGGCCAGTGTCAGGACCTG-GGGCCGTTCAGAGGACAGCCTC-----CAGAATCTAGGTCAAAGGGATCCTGCCTCTCA------------------GTCTATTCACTGCTCCACATGGCATCTCAGTGT-AGTCCACACCG----TTTTTAAACCATAACTTT-----------TTTCTAACGTTTCCTTTTGTTTTCCCGG------------------AGTTT-TG-AATCACATTTGTGTTTTCCTTATCGGGGAAA---GAAGCTCATGCCTCTTTACCTGCCCATAAGAGTCTCCTGGCTCTTTC------------CCCACCCACTCAGTTGATTTTCAAAGCCATTGG----TGGGCCACTTCCCAAAGCTGCTGGCAGCCCCAGCTATCCTGGGCTCCCGG--GGGAA-GCCCCCCCCATTCAATGATGCAGGGGACCTGGGCTCCTGCAGAGGTGGGGCTTAGCCCTCCTCTGAGGCCCTGGCCTCACCCTGCTCTTTCTGCCTT-GGGGCCACAGGTACCCTGTGATCCTGTCCATCGAGAACCACTGTAGTGTCATCCAGCAGAAGAAAATGGCCCAGTATCTGATGGATATCCTTGGGGACAAGCTGGACCTGTCATCTGTGAGCAGTGAGGATGCCACCACACTCCCCTCTCCACAGATGCTCAAGGGCAAGATCCTTGTGAAGGTGAGCCCCAGCGCTTCCTGGGACCCACACCACACTGGATC----TCA--CCTGTGGCTAGGG---------------------------CCTGT----------------------GCCATCCATGGGCAA-------ATTCGCGGCGGGGGCCATGCCCCTGACCTGGCCTCCATCTCC--CCATGGTGGCCACCCAGTCTTGGGACCTCCACGTGCACTTCCGGTGTTGTGTCCC-CACGCTGCTGCTGCAGGGGC----TGGGCAAGCTG------------GCCCCGTCCCAGGGCCTGAGACTACAGAGGCAGCCTGG-GAGG-AGGTCCTGGCCTTCGCTGGCTGCTCCCTGTGGGCCTGGG-AGCTGGCCTCCCAGTCCTTCC----------------TCAGGGCCCCT------CCTGTCTCCTTTTCTTCAGGGGAAGAAGCTTCCGGCCAC---------------------------------------------------------------------------------------------------------------------------     
 4 Galeopterus_variegatus-NW_007727608.1-245773_246478  91.1%  60.6%    -----------------------T-CCTTCTTTATGGGGCCAATGCCAGGACCCCAGGGCTATTCAAAGGATAGTCTCT---TCAGTATTGAGGTCAAAAGGATTATATTTCTCACAATCT----------------ACCCATTGCTCCATGTTGCAACTCTGTGC-AGTCCGTGTCC----TTTTTAAACCATCACCTT-----------TTC-AAACGTTTCCTTTTGTTTTCCTGG------------------AGTTCCTAGTTGCCTTTGCTTTTTCTTAT------TGGGG---AAGCTCGTGCCTTCCTTACCTTTCCCTA-AGATCTCCCAGCTCCTTT------------CCCACCCTCTGAATTACT------TCACAGTTGTTGGTGGGCCACCACCTGAAGCAGCTGGCAGCCCCACCTATCCTG-GTTTCTGG--TGAAGACCCCTCTTCATTCAATGGTACAGGTGACCTGGGCTCCTACAGAGGTGGAGCCTGGCCCTCCCCTGGGGCCCTGGCCTCACCCTC-TCCTCCCACATT-GGGGCCACAGGTACCCAGTGATCCTGTCCATTGAGAACCACTGTAGTGTCATCCAGCAGAAGAAGATGGCCCAATATCTGACTGACATCCTTGGGGACAAGCTGGACCTGTCATCGGTGAGCAGTGAGGATGCCACCATGCTTCCTTCTCCCCAGATGCTCAAGGGCAAGATCCTGGTGAAGGTGAGCCCCTGCCCCTCCTGGGGATAGCAT---TGTGCCAGGCTGTGA--CCTGGGGCAGGGC---------------------------GCTGCTGCAGACAGGTTGGGGCATCATGCCGTCTGGGGGAGACCCAGCCTCAGTCTCCCCAT----GGGGGCTGTGGCGTGTTCCTTTTCC--ACATGGCTGCTGCTGCAAGGAACC-----------------------------------------------------GACAGGCCTGGACC------------GCCCCCGCCCATGCCCTGAGATTCCAAAAGCAAGCTGGGAAA--AGACCCTGCACCTTGCCGGCTGCTGCTTGTGGGAAGACT----------TCCGGTACTTCC----------------TTCAGGGCCTCTCCCACCATCCGTCTCCTCCCCCAGGGGAAGAAGCTCCCGGCCAGCATCAGCGAAGATGCGGAGGAGGGAGAGGTGTCCGACGAGGACAG------------------------------------------------------------------------------     
 5 Lipotes_vexillifer-NW_006774135.1-192396_193280      93.8%  59.8%    ----------------------GCCGTGCTG------TGTGGCTTGTGGGATATTAGTTCCCCC-ACCAGAGGGGGACTAACCCTAACCCTGGGCTCCCTGCAGTG-------CAAGTGCAGAGCC----------------CTAACCCTGGACCACCAGGGAGGT-CCCCCACGTCA----TTTTCAAACCGTGACTTG------------CTTGAACGTTTCCTTTTGTTTTTCCTG------------------GATTTTCTAATTGCCTTTGTTATTTTCTTATTGGGAGAAA---AATTTCATGCCTGCTCTACCC-ATCCCTAAGGTCTCCCAGCTCCTTT------------CCCCCACACTCACTTGCTTTGGAAAGCCAT----TGGTGGGCCCCCTCCCAGAGTGGCTGGCAGCCCCGTCTATCCTGGGCTCCT-G--TGAAGACTCCTCCTCATTCAGTGGTGCAGGTGGCCTGCAGGCCTGCACAGGTGAGACCTAGCCTTCCCCTGGCC--------TCATTCTGCTCCTCCCCTCTT-GGGGCCACAGGTATCCAGTGATCCTGTCCATCGAGAACCACTGCAGTGTCGTCCAGCAGAAGAAGATGGCCCAGTATCTGACCGACATCCTTGGGGACAAGCTGGACTTGTCATCAGTAAGCAGTGAGGATGCCACCATGCTACCCTCTCCACAGATGCTCAAGGGCAAGATCCTGGTGAAGGTGAGCCCCTGCCTACCCCTCCTGGGGCCAGCGTCCTGCTGAGCCTCTGACCTCCGACCTCTAACCTGCAGTCAGGTCAAGGGCAAGG-CCCTGCTCCAGACAGGCTGGGGTTCTGCAGCATCTATGATAGATTTGAGGGGCCACAGGGCAAGCCCTGCCCCTGACCTGGCCTCCATCTCA--CCGTGGCGGTCAATCAACTTGGGGCCTTTGGCATGCACACCCGGGCATGTCCCTCCCACACCGCTGCCGCAAGGATGGGTGGGC---T---------------GGCC-CTGCCCCCAGCCTGAGAGCCACAAGCAAGCTTGGGAAA-G-GCTCCTATGCTTTGCTGCTGCTCCTGCGG-G-------TGCCGGCCCCCCAGCACTTCCC---------------CCAGGGCCCCTGCCAAGGTCCACCTCC--------------------------------------------------------------------------------------------------------------------------------------------------------     
 6 Ceratotherium_simum-NW_004454172.1-192667_193585     93.4%  63.0%    ------------------------------TCTGTGGTGCCAATGTTGGAACCCCAGGGCCATCCACAGGACGGTGTCT---CCAATATCTAGGCAAGTGGGATTGTCTTGCACACAGTCTGTCCA----------------TCACGTCACGTTGCATCTCAGTTT-AGTCTGCATCA----TTTTTAAACCATGACTTACTGACTT----GCTCGAATGTTTCCTTTTGTTTTCCTGG------------------AGTTTCTAATCACCTT-----TGATTTTTCTTATTGGGAG---AAGTACGTGCCTTCTCTACCT-GTTCCTAAGATCTCCCAGTCCT-TT------------TGCACCCACTCAGTTGCTTTTCAAAGCTAT----TGTTGAGCCC--TCCTGGAGTGGCCGGCAGCTCCATCTTTCCTGGGCTCCTGG--TGAAGACCCCTCCTCATTCAGTGGTACAGGTGACCTGGGGTCCTACATAGGTGGGGTCTAGACCTTCCCTGGCC--------TCACCCTTCTCCTCCCACCTT-GGGACCACAGGTACCCAGTGATCCTGTCCATCGAGAACCACTGCAGTGTCATCCAGCAGAAGAAGATGGCCCAGTATCTGACTGACATCCTCGGGGACAAGTTGGACTTGTCATCAGTGAGCAGCGAGGATGCCTCCATGCTGCCCTCTCCACAGATGCTCAAGGGCAAGATCCTGGTGAAGGTGAGCCCCTGCCTGCCCTTCTGGGGCCA-GCATCCTG-------CTGGGCCTCTGACCTCTGACTTGGGACCAGGTCAGTGACAGGG-CTGTGCTCCAGACAGCCTGGGGCTCTGTGCCGATTGTGGCAGATCTGAGGAGT--CAGAGCAGGCCCTGACCCTGACCTGGCCTCAGTCTCC--CCATGGTGGCCACTCCATCTGGGA-CTTCCACAGGCACACCCAAGCAATTCCCTCCCACGCTGCTGCTGCAAGGAAGTT-------GG---------------TCCC-TGCCCCATGGCCTGAGACCCACGAGCAAGCTTGAGACA-G-GCCCCCTCCCTTCGCCACTGCTCCTGAGG-G-------TACTGGCCGCCCGGCACCTCCT---------------GCGGCC--CCTCCATGGTCTGCCTCCTCCC--CCAGGGCAA------------------------------------------------------------------------------------------------------------------------------------------     
 7 Felis_catus-NC_058375.1-194622_195613                94.7%  63.7%    --------------------------------TATGGGGCCGACGTTGGGACCCCAGAGCCATTCACAGGACAGTGTCT---CCAGTATCTAGGCCAACAAGAT--TATTTTTCTCAGTCTAGTCA----------------TTGTTCCATATTGCACC--TGTTT-AGTTCACATTA----TTTTTAAACCATGACTGGCTGACTT----GCTTGCATTTTCCCTTTTGTTTTCCTGG------------------AGTTTCTAATTGC-CTTTGTTTTTTTCTTATTGGGCTATG---AATTGCATGCCTTCTTTACCT-GTCCCTAACATCTCCCAGATCCTTT------------CCCACCCACACAGTTGCTTTTCAAAGCCAT----CGATGGGCCCCTTCTCAGAGTGGCTGTCAGTTCCATCTATCCTGGCTGCTGG---TGAAGGTCTCTTTTCATTCACTGGTGCAGGTGACTTGAGGTCTTACACATTTGGGGGCCTAGCCCTCCCCTGGC--------TTACTCTGCTCCTTCCACCTT-GGGGCCACAGGTACCCAGTGATCCTGTCCATTGAGAACCACTGCAGTGTTATCCAACAAAAGAAGATGGCTCAGTATCTGACGGATATTCTTGGGGATAAGCTGGACTTGTCATCAGTGAGCGGTGAGGATGCCACCATGCTTCCTTCTCCGCAGATGCTCAAGGGCAAGATCCTGGTGAAGGTAAGCCCCTCCCTGCCCCTTCTAGGGCCAGCATCCTGCTGGGCCTCTGGCCTCTGATCTGTGGCCAGGTGAGGG------GCAGTTG-CCCTGCTCTGGACAGTACAGGGCTCCACACCATCTGTGGCAGATTTGAGGAGT--CAGGGTAGGCCCTGTGCCCAACCTGGCCTCAGTCTCCCTCCATGGTGGCCATTCAATCTAGGGACCTCTGTGTGCACACCCAGGCGTTTCCCTCCCACACTGCTGCTGCAAGGAAGTGCCAGACTGG---------------CTTC-TGCCCTGTGGCCTGAGGTCCACAAGCAAGCTTGAGAAA-G-GCTCCTTCCCTTTGCTGCTGCTCCTGTGG-C-------TACTGGCCTCCCAGTACTTCCT---------------GCAGAACCCCTCCCATGGTCCGCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------     
 8 Equus_caballus-NC_009145.3-194415_195395             94.0%  63.3%    -------------------------------CTTTATGGGCCAATGTTGGACTCCAGGGCCGTCCACAGGATGGTGGCT---CCCGTGTCTAGGTCAATGGGACTGTCTCTCGCACAGTGTACGCG----------------TCACATCACATCGCATCTCAGTTT-GGTCCACATCG----TCTTTAAACCATGACCTGCTGGCTT----GCTCGAATCTTTCCTTTTGTTTTCCTGG------------------AGTTTCTAATCACCTT-----TGTTTTTTTTTATTGGGAG---AAATACATGCCCTCTTCACCC-GTTCCTAAGATCTCCCAGTCCT-TT------------CCCACCCTCTCAGTTGCTTTTCAAAGTCAT----TGGTGAGCCCCCTCCCAAGCTGGCCGGCAGCTCCATCTATCCGAGGCTCCTGG--TGAAGACCCCTCCTCATTCAGTGGTGCAGGTGACCTGGGCTCCTACATAGGTGGGGTCTAGCCCTTCCCTGGCC--------TTGCCCTTCCCCCCCCACCTT-GGGGCCACAGGTACCCAGTGATCCTGTCCATCGAGAACCACTGCAGTGTCATCCAGCAGAAGAAGATGGCCCAGTATCTGATTGACATCCTTGGGGACAAGCTGGACTTGTCCTCAGTGAGCAGCGAGGATGCCTCCATGCTGCCCTCTCCGCAGATGCTCAAGGGCAAGATTCTGGTGAAGGTGAGCCCCTGCCTGCCGTCCT-GGGCCA-GCATCGTG-------CTGGGCCTCTGACCTCTGACGTGGGACCAGGTAAGGGGCAGGG-CCCTGTTCCAGACAGGCTGGGGCTCTGCACCAATTATGGCAGATTTGAGGAGT--CAGGGCAGGCCCTGACACTGACATGGCCTCAGTCTCT--GCATGGTGGCCACTCAATATGTGGACCTCCACATGCACAGCCAGGCATTTCTCTCCCACGCTGCTGCTGCAAGGAGGTGTTAGGTTGG---------------CCCC-TGCCCCATGGCCTGAGACCCACAAGCTAGCTTGAGAAC-G-GACCCTCCC-TTTCCCGCTGGTCCTGCAG-G-------CACTGGCCTCCCAGTACATCCT---------------GCAGGGCCCCTCCGTGGTCTGCCTCCTCC------------------------------------------------------------------------------------------------------------------------------------------------------     
 9 Tupaia_chinensis-NW_006198262.1-193256_194204        95.0%  64.4%    --------------GCTTATGTCT-CCTTCTTTAAGGGGCCAATATCAGGACCCTAGAGCCATCAACAGGACAGTGTTC---CCAGTATCTAGGTCAAAGGGATTATATTTCTCACAGTCTGTCC----------------ATTGCTCCATATTGCACCTCAGTTT-AATCCATGCCA----TATTTAAACTATGTGTTT-----------TTA-AAATGCTTTCTTTTGTTTTCCTGG------------------AGTTTCTAATTGCCTTTGTTTTTTTCTTACTGGGGAAAACTCACATCTTCTTCA-CCTTTCACCTGTCCCTAAGATCTCCCAGTTCCTTT------------CTCATCCATTTAGTTACTTTTAAAAGTCAT----TGGTGAGCTACCTCTTGAAGCTGTTGGCAGCCCCATCTATCCTGGGCTCCTGG--TGAAGACCCCTTAT----CAATGGTGCAAGTGACTTGGACTCCTACAGAGATGGTGCCTAGCCCTCCGCTGGATTTTTGGTTTCATCATACTCC-TCCCATCT-TGGACCTCAGGTACCCAGTGATTCTGTCCATTGAGAACCACTGCAGTGTAGCGCAGCAGAAGAAGATGGCCCAGTATCTCACTGACATCCTTGGAGACAAGCTGGACCTATCATCAGTGAGCAGTGAGGATGCTACCATGCTTCCTTCTCCACAGATGCTCAAGGGCAAGATCCTGGTGAAGGTTAGCCCCTGCCCCTTCTGGAACCAGTGTCACTCCAAGCTTTTG-------------------------------------------------CTCCACACAGGTTGGGATATAATGTAATCTGAGGGCAGATTTGGGGTGATCAGGGAAGGCTTTGTCTCTGACCTGGCTTCAG-----------GGTGGCCATTCAATCTTGGAAGCTCCACATTCACATTGAGGCATTTCTCTTCCATGCTGCTGCTGTGCAAAGAACTGACTCGTCTGG------------TCCCTGCCCTATTGCCTGAGATTCCAAAAGCAAGATTGAGAAAAGGCTCCTGCCCATTGCTTGCTGCTCCTGTAGATTCTGGG--TACTGCTTCCCAGTATTCCC----------------TCAGGGCCCTCCATTTGCTCATTTGTCCACCTTCTACAGGGGA----------------------------------------------------------------------------------------------------------------------------------------     
10 Vulpes_lagopus-NC_054833.1-193676_194652             93.9%  62.9%    --------------------------TTTTCTTATGGGGCCAATGTTGGGACCCCAGAGCCATTCACAGGACCATGTCT---CCAGTATCTAGGTCAATGAGAT--TATCTTTCTCAGTCTATTCG----------------TTGCTCCATGTTTCACCTCAGTTT-AGTCCCCATCT----TTTTTAAACCATGACTTGCTGACTT----TCTTGAATGTTTCCTTTTGTTTTCCTGG------------------AGTTTCTAATTGC-CTTTGTTT-TTTCTTATTGGGATATG---AACTGCATGCCTTCCTTGCCT-GTCCCTAAAATTTCTTAGCTCATTT------------CCCACCCACTCAATTGCTTTTCAAAGCCAT----TGATGGGCCCCCTCCCAGAGTGGCTGGCGATTCCATCTAACCTGGCTGCTGG---TGAAGATATCTTTTTATTCACTGGTGCAGGTGACTTAAGGTCTCACACAGGTGGGCCCTATCCCTCCCCTGGCT--------TCTCTCTGCCCCTTCCGCCTT-GGGGCCACAGGTACCCAGTGATCCTGTCCATTGAGAACCACTGCAGTGTCATCCAACAGAAGAAGATGGCCCAGTATCTAACTGATATTCTTGGAGATAAGCTGGACTTGTCATCAGTAAGCAGTGACGATGCCACCTTGCTTCCTTCTCCACAGATGCTCAAGGGAAAGATTCTGGTGAAGGTGAGTCCCTGCCTG------------CCAGCATCCTGTGGGGACTCTGACCTCTGATCTGTGGTCAGGTGAGGG------GCAGTTG-CCCTGCTCTAGACAGTATGGGGCTACATACCATCTCTGACAGATTTGA---GT--CAGGGTAGGCCCTACCTCTGACTTGGCTTCAGTCTTCCTCCATGGTGGCCACTCAATCTGGGGACCTCCAAGTGCACACTGAAGCATTTCCCTCCCATGCTGCTGCAGCAAGGAGGTGCCAGGTTGG---------------CCTC-TACCCCGTGGCCTGAGGTTCACAAGCAAGCTTGAGAAA-T-GCTCCTTCCCTTTGCTGCTTCTTGCATGG-G-------TACTGGCCTCCCAGTACTTCCT---------------GCAGGACCACTCCCACGGTCCACTGTCTCCCC---------------------------------------------------------------------------------------------------------------------------------------------------     
11 Camelus_dromedarius-NC_044523.1-194288_194904        90.7%  56.9%    -------------------TGTGCCAGGCTATGGGGGGGCCGATGTTGGGACCCCAGGGCCATGCACAGGACAGTGTCT---CCAGTAAATAGGTGAATGGGATTATCTTTCTCACAGTTGATCCA----------------TTGTTCCACGTTGCGCCTCATTTT-AGTTCACATCA----TTTTTAAACCATGACTTGCTTGAAC------------GTTTCCTTTTGTTTTTCCCG------------------GAGTTTCTAT-TGCCT-----TTGTTTTTCTTATTGGGAG---AAGTGCATGTCTTCTTCACCC-ACCCCTAAGATCTCCCAGCTTCTTT------------CCCACACACTCAGTTGCTTTTGAAAGCCAT----GAT--AGCCCCCTCCCAGAGTGGCTGGCAGCCCCTTCTATCTCGGGCTCCTGG--TGAAGATCCCTCCTCATTCAGTGGTGCAGGTGGCCTGGGGTCCTACATCGGTGGGGCCTAGCTTTCCCCTGGCC--------TCACCCTGCTCCTTCCACCTT-GGGGC--CAGGTATCCAGTGATCCTGTCCATTGAGAACCACTGCAGTGTCATCCAGCAGAAGAAGATGGCCCAGTATCTGACCGACATCCTTGGGGACAAGCTGGACTTGTCATCAGTGAGCAGTGAGGATGCCACCATGCTACCGTCTCCACAGATGCTCAAGGGCAAGATCTTGGTGAAGGTGAGCCCCTGCCTGCCCCTCCCGGGGCT-GAGCC----------TCTGACCTCTGACTGGGGACCTGGGGTCAGGTCAGGCGCAGGA-CCTTGCTCCAGCCAGGCTAGGGTTCCACACGACCTGTGGTAGATTTGAGGGAT--CAGGGCAAGCCCTGCCCCTGGCCTGTCTTCAGTCTCC--CACGGTGA-CCACTCAGTCTGGGGCCCTCCTCCGCACTCCTGGT--GTTTCCCT-------TCCTGCCGT----AGGGAGGTGTGGGC---------------TCGC-CCTGCCCCGGCCTGAGATCCACAGGGAAGCTTGGCAAA-G-GCTCCTACCCTTTGCCGCTGCTCCCGCAC-T-------TCCTGTAGGGCCCCTCCCACG--------------------------------GCCCACCTCCTCCC--CCAGGGCAAGAAGCTGCCCTCCAACATCAGCG-------------------------------------------------------------------------------------------------------------------     
12 Ailuropoda_melanoleuca-NC_048228.1-194404_195366     92.6%  61.0%    -----------------TATGTCT-CCTTTCCTATGGGGCCAGTGTTGGGACCCCAGAGCCATTCACAGGACCATGTCT---CCAGTATCTAGGTCA-TGAGAT--GATCTTTCTCAGTCTATTCA----------------TTGCTCCACATTTCTCCTCAGTGG-AGTCCACATCA----TTTTTAAACCATGACTTGCTGACTT----GCTTGAATGTTTCCTCTTATTTTCCTGG------------------AGTTTCTAATTGC-TTTTT----TTTTTTAATGGGATATG---AACTACATGCCTTCTTTACCT-GTCCCTAAAATCTCTCAGCTCCTTT------------CCTACCCACTCAGTTGCTTTTCAAAGCCAT----TGATGGGCCCCCTCCCAGAGTGGCTGGCAGTTCCATCTATCCTGGTTGTTGG---TGAAATCC-------------------------CTTGATGTCTTACACAGGTGGGGCCTAGCCCTCTGCTGGCT--------TCACTCTGACTCTTCCACCTT-GGGGCTACAGGTACCCAGTGATCCTGTCCATTGAGAACCACTGTAGTGTCATCCAGCAGAAGAAGATGGCCCAGTATCTGACTGATATCCTTGGGGATAAGCTGGACTTGTCATCAGTAAGCAGTGAGGATGCCACCATGCTTCCCTCTCCGCAGATGCTCAAGGGCAAGATTCTGGTGAAGGTGAGCCCCTGCCTGCCCCTCCTAGGGCCAGCATCCTGCTGGGCCCCTGACCTCCGATCTGTGGCCAGGTGAGGG------ACAGTTA-CCCTGCTCTAGACGGTATGGGGTTCCACACGATCTGTGGCAGATTTGAGGAGT--CAGGGTAGGCCCTACCCCTGACCTGGCCTCAGTCTCCCCCCATGGTCACCATTCAGTCTGGGGGCCTCCATGTGCACTCCCCGGTGTTTCCCTCCCGTTCTGCTGCAACAGGTAAGTACTAGGATGG---------------CCCC-TG-CCCCTGGCCTGAGGTCCGCAAGCAAGCTTGAGAAA-G-GCTCCTTCCCTTTGCTGCTTCTCGTGTGG-G-------TACTGGCCTCCCAGGACTTCCT---------------CCAGGACCCCTCCCATGGTCCACTGCCTTCCCCAGGGCAA-------------------------------------------------------------------------------------------------------------------------------------------     
13 Equus_przewalskii-NW_007674960.1-194415_195061       93.4%  45.2%    ----------------------------CTTCTTTATGGGCCAATGTTGGACTCCAGGGCCGTCCACAGGATGGTGGCT---CCCGTGTCTAGGTCAATGGGACTGTCTCTCGCACAGTGTACGCG----------------TCACATCACATCGCATCTCAGTTT-GGTCCACATCG----TCTTTAAACCATGACCTGCTGGCTT----GCTCGAATCTTTCCTTTTGTTTTCCTGG------------------AGTTTCTAATCACCTT-----TGTTTTTTTTTATTGGGAG---AAATACATGCCCTCTTCACCC-GTTCCTAAGATCTCCCAGTCCT-TT------------CCCACCCTCTCAGTTGCTTTTCAAAGTCAT----TGGTGAGCCTCCTCCCAAGCTGGCCGGCAGCTCCATCTATCCGAGGCTCCTGG--TGAAGACCCCTCCTCATTCAGTGGTGCAGGTGACCTGGGCTCCTACATAGGTGGGGTCTAGCCCTTCCCTGGCC--------TTGCCCTTCCCCCCCCACCTT-GGGGCCACAGGTACCCAGTGATCCTGTCCATCGAGAACCACTGCAGTGTCATCCAGCAGAAGAAGATGGCCCAGTATCTGATTGACATCCTTGGGGACAAGCTGGACTTGTCCTCAGTGAGCAGCGAGGATGCCTCCATGCTGCCCTCTCCGCAGATGCTCAAGGGCAAGATTCTGGTGAAGGTGAGCCCCTGCCTGCCGTCCT-GGGCCA-GCATCGTG-------CTGGGCCTCTGACCTCTGCNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NN---------------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-N-------NNNNNNNNNNNNNNNNNNNNNN---------------NNNNNN--NNNNNNNNNNNNNNNNNN------------NNN------------------------------------------------------------------------------------------------------------------------------------------     
14 Hipposideros_armiger-NW_017731634.1-178653_179468    90.1%  56.1%    -------------------TGTGT-ATCGGCTGCCTCCTCCATTGTGGGGACCCCAGGGCCACCCACAGGACAGGGTCT---CTAGTAGCTAGGTCGGTGGGGTTACCTTTCTCACAGTGCACCAA----------------TTGCTCCACATCGCACCCCAGTTT-AGTCCACATCA----CTTATGAACTGTGACTTGCTGACTT----ATTTGAATGTTTCCTTTTGTTTTTTTGG------------------AGTTTCTAATTGCTTTTG---ATTTTCTTATTGAAGAAAG---AAGTGCATATCTCCCTTACCT-GTCCCTGAGATCTGCCAGCTCCTTT------------CCCACCCACTAAGTTGTTTTTCAAAGCCAT----TGATGGGCCCCCTT-CCGCGTGGCTGGCAGCCCCATCTAGCCTGGGCTCCTGG--TGGAGACCTCTTCTCACTCACG----------------------GTGTAGGTGACCTGGGGTCTTCCCCTGGCC--------TCACCCTGCTCTTCCCACCTT-GGGGCCACAGGTACCCAGTGATCCTGTCCATCGAGAACCACTGCAGTGTCGTGCAGCAGCAGAAGATGGCCCAGTATCTGACCGACATTCTCGGGGACAAGCTGGACTTATCGTCAGTGAGCAGTGAGGACGCCACCCAGCTGCCCTCCCCGCAGATGCTCAAGGGCAAGATCCTGGTGAAAGTGAGCCCTGCCTGCCCTCCTGGGCCA---GCGTCCCGATGGGCCTGTGGCC--------------TGGGGCCAG-------GCCAGG-GCAGGGCCCTGCTCCACTGGGGCTCCGTGCCGTCAGTGGCAGATCTGAGGGCT--CGGGGGAGGCCCTGCCCCTGACCTGGCCTCAGTCTCT--CCATGGTGGCCACTCAGTCGGGGGACCTCCACATGCACTCCCCAGCGTTTCCCTTTCAAGCGTCTGTAGCGAGGAGGTGTGGGGCTGG---------------CCTG-AGACACAATGAACCTGAGAAAGGCCCTCCCTCTGCTGT-G-----------------GCGCCTCCCGTGG-G-------TACGG-CCACCCAGCC-TGCCC---------------GCAGGGCCCCTCC-CATGGTCTGCCTCCCC--CCAGGGCAAAAAGCTCCCAGCCAACATCAGCGATGACGCAG----------------------------------------------------------------------------------------------------------     
15 Castor_canadensis-NW_017871110.1-176554_177500       91.4%  56.8%    --------GTGGG--CCGGTTCATGTCTCCTTTATGGGGTCAATGTCAGAACCCCAGAATCATTCATCGA------------ACAGTGTCTAGGTCGGAGGGAATATGTTTCTTTTAGTCTATCTG----------------TTGCTCTACATTG-------CTTA-GTCCATGACAT----TTTTTAAACCATGGCTT------------TGTCAAATGTTTCCTTTTGTTTTCCTGG------------------AGTTTCTAGTTGCCTTTGC--TTCTTCTCATTGGGGAAAG---AAGGACATGCCTTCTTTAC-T-TGCCCCAAGATCTCCCATCTCCTTT------------CCTACCCATTCATTTGTTTTTAAAAGCTCA----TGGTTGGCCACCTCTTAAAGAGTCGGCAT-ACCCACCCATGTCCTGGGCTTGG--TGAAAACTCTTCCTCACCCAATGGTATGGGTGACCTGGGCTCCTATATACGTGGGGTCTAGCCCTCCCCTGGGATCTTGGCCTTATCCCACTCCTCT-TGCTTTGGGACCACAGATACCCAGTGATCCTGTCCATTGAGAACCACTGTAGTGTTGTCCAGCAAAAGAAGATGGCCCAGTATCTGACCGACATCCTTGGGGACAAGCTAGACCTGTCATCTGTGAGCAGTGAGGACGCCACCATGCTTCCTTCTCCACAGATGCTCAAAGGCAAGATCCTGGTGAAGGTGAGTCTTCTAGGATTATCATCCCGCTGGACC------------TCTGACCTGGGACCAAGCTGGAGCATCACACCAT---CTGTGG-GCAGACTTTTTTTTGGTGGGGGGGATGT---------------------------CCAAGCAGG-CCATGCACCTAGTTGTCCTCAGTTTCC--CCATAGTAGCCTCTCAGTCTAGGGATCACCACGTGCACATTGAAGCAGTTCCCTTGTATGCTGCCCCTACAAGGAAGTGAATGGTCTG---------------TCCCCTGCCTCAAGGCCTGAGATTCCCAGA-GCCATCTTGAGG-C-CCCCTCCCCTTTGCCGGCTGCTCTGTTGG-GTGCCAG-TCACTGGATTCCCGTACTTCCT---------------TCAGGGCCCCTCCCATTGTCCGCCTCATCCC-CCAGGGGAAGAAGCTTC----------------------------------------------------------------------------------------------------------------------------------     
16 Trichechus_manatus-NW_004444058.1-175304_175883      86.8%  51.2%    ---GTGTCCCAGG--CTTATGTCT-CCTTCTCCATGAGGCCAATGTCGGAGCCCCA-GGCCATCCAAGGGC-AGTGTCC---CCAGTGTCTAGGTCA-AAGGGTCATCTTTCTTACCATCTGTCTA----------------TTGTTCCACGTTGTATCTCAGTTT-AGTCTGCATCG----TTTTTGAACCATAGATT------------TCTCAGATGTTGCCTTTTGTTTTCCTGG------------------AGTTTCTAATTGCTTTTCTTT--TTTCTTACTGAGAGATT---AAGTGCATATCTTCTTTTTCT-GTACCTGAGGTCTCCCAGCCACTTT------------CCCACCCACTCAGTTGCTTTTCAAGGTCAT----TGGTGGGC-CCCTCCTGGAGCAGCTGGCTGCCCTATCTGTCCAGGCCTCTTGA--TGAAGACCCCTCCTTGATATGT------------------------------GG------------TTCTGAGGCCCTGCCTC--ACCTAGCTCCTCCTGCCTTGGGGCCACAGGTACCCAGTGATCCTGTCCATTGAGAACCACTGCAGTGTCATCCAGCAGAAGAAGATGGCCCAGTACCTGACTGACATCCTTGGGGACAAGTTGGACCTGTCGTCGGTGAGCGGCGAGGACTTCACCATGCTTCCCTCTCCAGAGATGCTTAAGGGCAAGATCCTGGTGAAGGTCAGCCCCTACCCCTCCCAGAGTCAGCATCCA----ACTGGGCATCTGACCTGGGACCAGGACTTGGGGAGGGCCCTGCTCCAGAGAGGCCTGCCC-TGACCTGCCTGCG--TCTCCCTATGTATAACACAGTGGCCATGC--CAGTCTTGGGACCA----CCCCCCACCAACA--------------TGCACACT---------------------------GAATCATGTTCTTTCCACGCTGCTGCTGCAGGGAGGTGACGAGCCCTGGTTTTTACCCC---T------GCTGCGCCCCGAGTCACCCCAGGCAAGCTTGAGAAA-A-GCCTTGCCCCTTGACAGCTGCTCCTTTCG-G-------GTGCAGGCTGCCAGTACTTCCTTCAAGGCCCCTGGGCCCCTGGGCCCCTCCCACTGTCCACCTCCTCCCCCAGGGGAAGAAGCTCCCGGCCAACATCAGTG-------------------------------------------------------------------------------------------------------------------     
17 Lontra_canadensis-NW_022631019.1-194422_195035       91.1%  54.9%    ---------------CTGATGTCT-CCTTTCTTATGGGGCCAGTGTTGGGGCCCTGGAGCCGTTCGCAGGACAGTCCCG---TATCCAG--GCCAACCAGAT----TGTCTTTCTCAGTTGGTTCA----------------CCACTCCACGCCGCACC--TCCGT-TGAGTCCATCA----TTTTTAAACCATGACTTGCTGACTT----GCTTGAATGTGTCCCCTGGTTTTCCTGG------------------AGTTTCTAATTGC-CTTTGTTTT-TTCTTACTGGGATATG---AACTGTAGGCCTTCTTTATCT------------GTCCCAGCAACTTT------------CCCACCCACTCAGTTGCTTTTCAAAGCCAT----CGAGGGGCCCCTTACCAGAGTGGCTGGCAGGTCCATCTATCCTGGCTGCTGG---G-AAGATCTT--TTCATTCACTGGTGCAGGTGACTTGAGGTCTTAGGCAGGTGGGGCCTGGCCCTCCCCTGGCT--------TCACTCTGTTCTTTCCACGTTGGGGCCCACAGGTACCCAGTGATCCTGTCCATTGAAAATCACTGCAGTGTCATCCAACAGAAGAAGATGGCCCAGTATCTGACTGATATCCTCGGGGATAAGCTGGACTTGTCATCAATAAGTGGAGAGGATGCCACCATGCTTCCCTCTCCGCAGATGCTCAAGGGCAAGATTCTGGTGAAGGTGAGCCCCTGCCTGCCCCTCCCCGGGCCGGCGTCCTGCTGGGCCTCTGACCGCTGCTCTGGGGCCAGGTGAGAG------ACAGTTG-CCCTGCTCTAGACAGTACGGGGCTCCAT---------------GCTGAGGAGT--CAGGGTAGGCCCTACCCCCGACCCGGCCTCAGTCTCCCCCGTGGTGGGCCCGCAAT-CTA-AGGACGTCCAGTGCACAGCCCAGCGTTTCCCTCCCGTGCTGCCACAGCAAGGGAGTGCTGGGCTGG---------------CCTC-TACCCTGTGACCTGAAGTCCACGAGCAAGCTTACGAAG-G-GCTCCTTCCCTTTGCTGCTTCTCGGGTGG-C-------CTCCCAGC-------ACTTGCG---------------GCAGGACACCTCCTGTGGTCCCC-GCCTCCCCCCAGGGCAAGAAGCTTCCTG-------------------------------------------------------------------------------------------------------------------------------     
18 Loxodonta_africana-NW_003573446.1-174906_175484      83.0%  47.9%    GGTGTGTGCCAGG--CTTATG----TCTCTTCCTTGGGGCCAATGTTGAGGCTCCA-GGCCATCCAAGGGC-AGTGTCC---CCAGTGTCTAGGTCA-AAGGGTCATCTTTCTCACCATCTGTCCA----------------TTGCTCTACAACATGTCTTGGTTT-ATTCTGCATCA----TTTTTGAACCACAGATT------------TCTCAGATGTTGCCTTTTGTTTTCCTGG------------------AGTTTCTAATTGCCTTTCTTT--TTTCTCACCAAGAGATG---AAATGTGTGTCTTCTTTCCCT-GTCCCTGAGGTCTTCCAGCCCTTTT------------CCCATCTACTTAGTTGCTTTTCAAAGTCAT----TGGTGGGC-CCCTCCTGGAGCAGCTGGCAGCCCTATCTGTCCAGGCCTCTTGA--TGGAGACCCCTCCTTGATCAGT------------------------------GG------------TTCTGAGGCCCTGGCTC--ACCCAGCTCCTCCTGCCTTGGGGCCACAGGTACCCAGTGATCCTATCCATTGAGAACCACTGCAGTGTCATCCAGCAGAAGAAGATGGCCCAGTACCTGACTGACATCCTTGGGGACAAATTGGACCTGTCGTCGGTGAGCAGCGAGGACTTCACCATGCTTCCCTCTCCAGAGATGCTTAAGGGCAAGATCCTGGTGAAGGTCAGCCACTACCCCTCCCAGGGCCAGCATCCA----ACTGGGCATCTGACCTGGGACCAGGACTTGGGGAAGACCCTGCTCCAGACAGGCCTGTGT-GCCAATCTAGGGA------------------------------------------CCTCC----ACCCCTGCCAACA--------------TGCATACT---------------------------GAATCATGTCCCTTCCATGCTGCTACTGTAGAGAGGTGACAAGCCCTGGTCCCTACCCCCTGC------TCCACCCCCTGAGTCACCACAGGCAAACTTGAGAAA-A-GCCTTGCCCCTTGACAGCTGCTCATTTCG-G-------GTGCAGGCTGTCAGTACTTCCTTCAAGGCCCCTGGGCCCTTGGGCCCTTCCCACTGTCCGCCTCCTCCCCCAGGGAAAGAAGCTCCCGGCCAACATCAGTGAGGACGCTGAGGAGGGCGAGGTGTCTGATGAGGAC--------------------------------------------------------------------------------     
19 Ovis_aries-NC_056065.1-182170_182854                 90.9%  51.5%    -------------------------TTGATT-TTTTTTTCTTATGGGGAG-----------AAGTACATGC--CTCCTTTACCCACCCTCAAGGTCTCCTGGTTCATT-CCTCCACAC-----------------------------------------TCAGTTG-CTTTAAAAATT----TTTTTAATTTATTTGTTTTTGGTTG----TGCTGAGTGGATTCTCTTATTGCAGTGGACAGGCTCCAGGGCACTCAGGCTTCAGTAGTTGTGG---CTTGTGGGCTTGGTTGCCC---CAAGGCGTGTGGAATCTTCCC-AGACCAGAGATTGAACCCATATCCTCTGCATTGGCAGGTGGATTTTTAACCGCTGGGCCACAGGGAA----AAGTCCTCACCCTCCTAGAGTGGCTGGCAGACACATCTCTCCTGGGCTCCTGTGAAGAGCCCCCCTCCTCATGCAATGTTGCAGGTGACCTGCGGTCC-TACGTGGTGGGACCTGGCCTTCCCCCAGCC--------TCATCCTGCTCCTTCCATCTT-GGGGCCACAGGTACCCAGTGATCCTGTCCATCGAGAACCACTGCAGTGTCGTCCAGCAGAAGAAGATGGCCCAGTATCTGACCGACATTCTTGGGGACAAGCTGGACCTGTCATCAGTGAGCAGCGAAGATGCCACCACGCTGCCCTCTCCCCAGGTGCTCAAGGGCAAGATCCTGGTGAAGGTGAGACCCTGCCTGCCCTTCCCAGCACCTGCATCCTGCTGAGCCTCTGACCTCCGACCTCTGACGTAGGGTCAGGGCAGG-ACAGGG-CCCTGCTTCAGACTAGCTGGGGTTCCACACCATCTGTGATAGATTTGAGGGGT--CAGGACAAGACCTGCCCCTGCCCTGGCCTCCATCTCC--CCAGGGAAGTCCATCAACCTGGGGCCCTCAGCATGCACACCAGGGCATGTCCTTCCGGTGATGCTGCTGCAGGGC------------T---------------GGCC-CTGCCCCTGGCCTGAGAGCCACAAGCAAGCTTGGGAAA-G-GCTCCCCGCCTTACCTGCTGCTCCTGTGG-G-------AACTGGCCTCCTAGCACTTCCC---------------GCAGGGCCCCTCTCATGGCCTACCTGCTC------------------------------------------------------------------------------------------------------------------------------------------------------     
20 Miniopterus_natalensis-NW_015504651.1-682304_682956  89.1%  52.4%    -----------------------------CCTGATGGGGCCAACGCTGGGTCCCCAGGGCCTTCCACAGGACAGCGTCT---CCAGCATCTGGGTCCATGGGGTTACCTTTCTCACAGTCTGTCCA----------------TCGCTGCGCGTTGCACCCCCGTTT-TGTCCGCATCG----TTTATAAGCCGTGATGTGACGTGTGACCCCCTTGAATGTTTCCCTTTGTTTTCCAGG------------------AGTTCTCAGTCGCCTTTG-TTTTTCTCATGGGGTGGGGGG---TGGGGGAGTGAACACCTTCTC-TACCCTGAGGTCTTCCAGGTTCTCT------------CACACCTGCTCAGGTGCTTTTCCAAGCTGT----TGATAGTC-CCCTCCTGGGGTGGCCGGCAGCCCCATGTATCCTGGGCTCCTGG--TGGAGCCC--TTTTTATTCAGTGGTACAGGTCACCTGGGTCCC-ACGCAGGTGGGGCCCAGCCCT-CCCCTGGC--------CTCACCTGCTCCTCCCACGGT-GGGGCCACAGGTACCCAGTGATCCTGTCCATCGAGAACCACTGCAGTGTGGTCCAGCAGAAGAAGATGGCCCAGTATCTGACGGACATCCTCGGGGACAAGCTGGACCTGTCGTCTGTGAGCAGCGAAGACGCCACCATGCTGCCCTCTCCGCAGATGCTCAGGGGCAAGATCCTGGTGAAGGTGAGCCCTTGCCTGCCCGCCTGGGGCCG-GCATCCTGCTGGGGCTCTAACTGGGGGCAGG---------------G-----CTGGGG-CAGGGCGAGGGCAGGGCAGGGGCTCTGTCCCATCTGAGGCAGATCTGAGGAGTC---AGGGCCGCTCGGCCCCTAACCTGGCCTCAATCACT--CAGTGGTGGCCACGCCATCTGGGGACCTCGGGTGCACA-CCCAGGAGTCTCCCTCCCATGCTGAGACCCAGGAGCAAGCCTGAGAAGG---------------CCCT----CCCTC--------------------------------------------------------TGTGTT-G-------AACCAGCCCCCCAGCACTTCCT---------------GCAGGACCCCTCTCATGGTCCCCTCCTCCC--CCAGGGCAAGAAGCTCCCTGCCAGCATCAGCGAGGAGGCCGAGGAGGGCGAGGTGTCCGACGAG-----------------------------------------------------------------------------------     
21 Sus_scrofa-NC_010448.4-181122_181708                 87.2%  49.3%    -------------------------------TTTATGGGGCTGGTGTTGGGCCCCAGAGCCATGCACAGGACAGCACCT---TCAGCATC-TGGCGGATGGAATCACCTTCCTCACGGCCGACCCC----------------CTGCTCCGTGTTGCACCCCAGTTC-CGTCCACACCG----TTCTTAAACCATGACTTGGTGATAT----GCTGCAGCATTTCCTTTTATTTTTTCCTGG----------------AGTTTCGAATTGCCTTTG-----------TTTTTCTAATG---GCGGGGGTGCCCTCTGTACCT-ATCCCTGCAGTCTCCCAGCTCCTTT------------CCCACACGCTCAGTTGGTCTGGAAAGTCAC----TG-CGGGCCCCCTCCCAGAGTGGCAGGTAGTCCCATCTCTCCTGGGACCCTG---TGACGCTCCCTCCTTGGTCAGCGGTGCAAGTGAGCTGTGGTCCTACATGGGTGGGGCCCGGCAT-CCCCTGGCC--------TCATCCCATCCCTTCCACCTT-TGGGCTGTAGGTACCCAGTGATTCTGTCCATTGAGAACCACTGCAGTGTTGTCCAGCAAAAGAAGATGGCCCAGTATCTGACCGACATCCTCGGAGACAAGCTAGACTTGTCATCAGTGAGCAGTGAGGATGCCACCCAACTGCCCTCTCCGCACATGCTCAAGGGCAAGATCCTGGTGAAGGTGAGGCCCTGCCTGCCTCGCCTGGGGCCAGCATCCTGCTGAGCCTCCGACCTGGGGTCAGGGCCAGGGCAGTGC---------------CCGGCTC------CAGGCAGGTGTCCCCCTGTCTGTGATAGATTTGAGGAGT--CACGGCAAGCCCTGCCCCTGCCCTGGCCTCAGTCGAGGGGCCCTCTGCATCACCCC------------------------TGGCCGTTTCTCTCCTGTGCCACC-----------------------------------------C-CATCCCCTGGCCTGAGAGC----------------------CACAGGCTCCTGCGCCGCTGCTCCCGTGG-G-------TGCCAGCCTCCCAGGACTTCCC---------------GCGGGGCCCCTCCCACGGTCCACCCTCCCTCACCAGGGCAAGAAACTCCCAGCCAATATCAGCGAGGACGCCGAGGAGGGCGAGGTGTCAGACGAGGACAGCGCAGATGAGATTG----------------------------------------------------------------     
22 Orycteropus_afer-NW_006921723.1-174511_175086        87.5%  48.6%    -ATGTATGCCAGG--CTTTTGTCT-CCTTCTCCATGGGACCAATGTTGGGACCCAG--GCCATCCAA-GGG-CAGTGTT---CCAGTGTCTAGGTCA-AAAGTTCATATTTCTTACCATCTGTCTA----------------TTGTTCTACATCATGTCTCAGCTT-AGTCTGCATCA----TTTTTGAACCATAGATT------------TCTCAGATGTGCTTTTT-GTTTTCCTGG------------------AGTTTCTAATTGCCTTTCTTTCTTTCCTTACTGAGAGATG---AAATACATGTCTTCTTTCCCT-GACCCTGAGGTCTCACAAC-----C------------CCAACCCACTCACTTGTTTTTCAAAGTCAC----TGGTGGGC-CCCTCCTAGAGCAGCTGGCAGCCCCATCCATCCAGGCCTCTTAA--TGAAAATCCCTCCTTGATCAGT------------------------------GG------------CACTGAGGCCCTGACATCATCCCAGCTCCCCCTGCTTTGGGGTCACAGGTACCCAGTGATCCTGTCCATTGAGAACCACTGCAGTGTTGTCCAGCAGAAGAAGATGGCCCAGTATTTGACTGACATTCTTGGGGATAAGTTGGACCTATCGTCAGTGAGCGGCGAGGACTTCACCACGCTTCCCTCTCCAGAGATGCTCAAGGGCAAGATCCTGGTGAAGGTCAGCTTCTGCTCCTGTAAGGGCCAACATCCA----ACAGGGCACCTGACCTGGGACCAGAACCTGAGGAGGAACCTCTTCCAGACAGGCCCCACCCTGACCTACCTCAG--TCTCCCCATGTGTAACATGGTGACCATGC--CAATTTCAGGACCTTCGCCCCCCGCCCAACA--------------TACACACT---------------------------GAGTCATGTCCCTTCCACACTGCTGCTGCAGGGTGATGACAAGTCCCAGTCCCTGGTCCCTGCCTGCCCCATCCCCCTCAACTCATCATAATCAAGCTTGAGGAA-A-GCTCCACCCCTTGCCAGCTGCTTCTTTTG-G-------GTGAAGGCTGCCAGTACTTCCTCCAAAGCCCCTGGGGGTCCGCACCCCTCCCACTGTCTCTCTCCTTCCTCAGGGGAAAAAGCTCCCGG-------------------------------------------------------------------------------------------------------------------------------     
23 Pteropus_alecto-NW_006429611.1-198893_199337         80.7%  42.7%    ---------------------------TTCGCTGCGGGGCCAGTGCCGGGACCCCAGGGCCATC-CCAGGACGGGGCCT---CTGGTGTCGTGGTCCACGGGGTCCCCTTCCTCGTGGTCTCTCCG----------------TCGCTCCACGTTGCGCCCCAGTCC-AGCCCCCGCGCGTCATGGATAAACCACAGTTTGCCGACTT----GCGCTGATGTTTCTTTTCGTTTTTCTGG------------------AGTTTCTAATTGCTGTTGT----TTTTCCTGTTGGGGAAG---AAGCGTGCGCCTCCTCCACTC-GTCCCTATGACCCCCCGACTCCTTT------------CCCACCCACTCGGCTGCTTCTCGAAGCCGT----CGGCGGCCCCCCGCCCGGAGTGGCCGGCAGCCCCATCCACCCTGGGCTCCTGG--TGCAGACCACTTCTCATTCGCCG--------------GGGTCCTACACGGGTGG--------------GGCCCTCCCTGGCCTCACCCTGCTCCTCCCGTCTT-GGGGTGCCAGGTACCCAGTGATCCTGTCCATCGAGAACCACTGCAGTGTCATCCAGCAGAAGAAGATGGCCCAGTATCTGACCGACATCCTCGGGGACAAGCTGGACTTGTCGTCACTGAGCAGCGAGGACACCACCATGCTGCCCTCTCCGCAGGAGCTCAAGGGCAAGATCTTGGTGAAGGTGAGCCCTCGCCCGGCCCTGGGGCCTCCGACTTGGGACCACGGGTTGGCAGATTGGAGCGGTCAGCGTA-------------GGCTG-TCCGTCTG------TCCACGGTGGCCACTCAACCTGGGGACCTCC----------ACACGCACACCCAGGCCTTACAGCCCCGTGACACTG---------CAGCCAGGAAGTGGGGGGCTGGCCTGA------GAAAGGCACCTCGCTCTGCGGCTGCCCCCGGTACCGCCTCCCAGCGCGC---------------CT------CCCATGGCC---------------------------------------------------------------------------------------------------------------------------------GCCTCCCACAGGGCAAGAAGCTCCCGGCCAGCATCAGCGAGGACGCGGAGGAGGGCGAGGTGTCCGACGAGGACAGTGCCGACGAGATCGACGAGGACTGCAAGCTCCTGGACGGGGATGTGAGTGGGGGCCGGGGAGGTGGGGGACTGTGGCG     
24 Onychomys_torridus-NC_050444.1-180278_180768         83.3%  42.7%    -GTGTAAGCAGATAGCAACTGTCTTGCTTGATGGTGCATGCCAGGCTTAG--------GCCACTGTCAGAACTCCAGGGCCTCCACTGTCTAGCTCAATGAGATAATGTTTATTCA--------------------------TTATTCT------------ATATT-ATCTAGTACATGCCATATTCAAACCATGACTTTTTCAGAC----------ACTATCTTTTTTACTTTCCTGG------------------AGTTTTTTATTGCTTTTTT-------------TTTTTTTT---TCTCTCATGCTTTCTTTACTT-GTCCCTAAAAATTCTCAGTTTCTTT------------CCTATCCATTTATTTACTTTTCAGAGTTAT----TGGTGGGTCACCTCTTAGAACAGATGGCAGATCTTTTACCCAATTACTTA-----ACTACCTATATCATCATTCAAAGGTATAGGTGGCCTGTATACCTACAGATTTGGGGCTTAGTCATGCTCTAGGATTCTGGCATCTTCCCACCCCTCTTGTCTT-GGTACCATAGGTACCCAGTGATCCTGTCCATTGAGAACCACTGTAGTGTCATTCAGCAGAAGAAGATGGCCCAATATCTGACCGACATCCTTGGGGACAAGTTGGACCTATCCTCAGTGAGCAGCGAGGATGCCACCATGCTTCCTTCTCCACAGATGCTCAAGGGCAAGATCCTGGTGAAGGTGACTTTTCGGGGACTGTCACTGTTATGGCTCTGGCCTGGGG--------------CCAAGCTGGGGAATTAGA---------G-TG-TCTATATACAGATTTGGGGGTGGGCACTCACCCTTGGGA-TGAC-----------CATATCATCTTGAGCCACCTCCCTTGCATGCTGCAACACAAGTGCAACCCACTTC------------------------------ATG---------TCCTGAGATTCCAAGAAG----------------------------------------------------------GAGCTTGGAAAA-G-CCCCCTCCCCATCGCAGCTGCTCCTAGTGGGTACCAG-CCGCTGGATCCCTGTACTCCCT---------------CCAGAG--CTCCTCCTCCTACCTGCCTTGTCCCCAGGGGAAGAAGCTTCCGGCCAATATCAGCGAGGATGCAGAGGAAGGCGAAGTGTCTGATGAGGACAGCGCCGACGAGATGGATGATGACTACAAG--------------------------------------------------     
25 Meles_meles-NC_060066.1-193198_193810                90.5%  53.6%    ---------------CTGATGTCT-CCTTTCTTATGGGGCCAGTGTTGGGGCCCCGGGGCCGTTCACAGGACCATGTCT---CCGGTATCCAGGTCGACCAG----ATTCTTTTTCCGTCGGTTCA----------------CTGCTCCGCGTCGCCCC--TCCGT-TGAGCCCATCA----TTTTTAAACCATGACTTGCTGACTT----GCTTGAATGTGCCCCCTGGTTTTCCTGG------------------AGTTTCTAATTGC-CTTTGTTTT-TTCTCACCCGGACATG---AACTGCCTTCTTT----ACCC------------GTCCCAGCCACCTT------------CCCTCCCAC-TCGGTGCTTTTCAAAGCCAC----TGAAGGGCCCCTTCCCAGAGTGGTGGGCAGGTCCATCTGTCCTGGCTGATGG---G-AAGATCTCTTCTCACTCCCTGGTACAGGTGACTTGAGGTCTTGGGCAGGTGGGGCCTGGCCCTCCCCCAGCT--------TCACTCTGTTCTTTGCGCATCGGGGCCCACAGGTTCCCAGTGATCCTGTCCATCGAGAACCACTGCAGTGTTGCCCAGCAGAAGAAGATGGCCCAGTATCTGACGGAGATCCTCGGGGATAAGCTGGACTTGTCATCCGTGAGCGGCGAGGATACCACCATGCTTCCCTCTCCGCAGGTGCTCAAGGGCAAGATTCTGGTGAAGGTGAGCCCCTGCCTGCCCCTCCCCAGGCCGGCGTCCTGCTGGGCCTCTGACCGCTGCTCTGGGCCAG-GGGAGAG------ACGGTTG-CCCTGCTCTAGGCGGTGCGGGGCTCCACACTGTCGGTGGCAGATCTGAGGAGT--CAGGGTAGGCCCTACCCCCGACCTGGCCTCAGTCTCCCCCACGGTGGGCCCTCAGT-CTA-GGGACGTCC---------------------------GTGTGCACAGCCCAGCGAGTGCTGGACTGG---------------CCTC-TACCCCGTGACCTGAAGTCCACGAGCAAGCTTAAGAAG-G-GCTCCTCCCCTTTGCCGCTTCTCGGGTGG-G-------TACCGGCCTCAGC--ACTTGCC---------------GCAGGACACCTCCCCTGGCCCACCACCTCCCTCCAGGGCAAGAAGCTTCCGGCCAGCAT------------------------------------------------------------------------------------------------------------------------     
   clustal                                                                                                              ..                                                  .                                                                         .            .:                                      * .                           .              :                                                                                                                                         .       *      .                                                                          *.                                 .                 *      **.*: **:***** **.***** **.** ***** ***** .  **.**..****.***** **.**  * *  ** ** ** **.** **. *.*** *.** **  *.** .* ** **    :**  .** ** ** **  * .:*** *..**.*****  * *****.** *