Job
PLCH2_human-child_4
Submission Status: No Result!
RNAcode could not find significant results in the alignment.
Full Status
1. Iteration 
Blast
Select Sequences
Alignment
RNAcode
Input
TGGGCAGACTGGGGACGGGTTGCTGGTTTTTGCCTCTGATAAACCGTGTGACCTCACACAAGGGACTGAGCCTCTCTGAGCCTCCATGGGCAAGAGGGATAGCATGGGGCGCTTTCACAGGGTGGCTGTGGGCATTCAGAGCAAGCCTGTCTGCAGTGGTCATGCCGTGCCTGGCCTGTGCAGCTGCTCCAGGGTGCCTGTCCCCTCCTCTGTCCCACCCCCAGTGGAGGTGCCCTCTCTGAATGGAGAATAGTGTGGCAGATGTAACCAGGGCTGCTGGGCAGACACTGTTTGTAGGATGGGCTGTATATTCAGGTCACTCCAGGTGCACCCACTCGCTGACCGCAGCCCCCATCCCAGGGCTCTCCTGGGCACGTTGTCCCTGGTTCCTGCCTGTCTGGCCTGCAGAGAGCTCCCTGGAGTCACTGCCCTGTGCTGGCCACTGGGCTCAGGATGCCTGCCTGCTGTGGACAGGGGCTGGCTGCTGCCGGGTGGCCCCAAAGCCCCAGGTTCCAGGAGACCCAGCACACTTGGGGTCTGCAGCTGGCCAGGGAAGGGCCTAGTCTTAGGAGGGGGCAGTGGTGGGAGTGGCTCTGAGCCCACCCTCCGTGCCTGCGTCCTCTGGGCAGAGGGAGGGGAGCCAGCAGAACAGTCCTTACAGACTCCACGTGCCGCCGAGGACGGAGCAGATGGGCCAGTGTCCTGGGTCCAGCCCTCCATCTGCACAGCTAATGAGCTGATGACGATGGCGTCCCAGTTCCTGGCACCTTCTCCTGGAGAAGCCATGGGCTGGCCCTGCCCGGGCAGTGCCCTTTGCTGGGGCAGGTGTGTGTGGGGTGCCTGGGGCCCTCTCAGGGACCCAGGCCCAGTGGCTCCACCTTCATTGAGGGTGGGCAGGGGGAGGGGTTGGGGAAGGGGATGAGTAATCCAACGTGCCTGTTTCTTCCCGGGATTTTGCTCCCAGCACTGCATACGTGGGCTCCCACCGGCTGGACGGACT
Selection Arguments
Sequences in the aligment must have a pairwise distance to any other sequence of 10.0%.
Sequences can only have pairwise distance to the input sequence of 60.0%.
Sequences are searched in the RefSeq Representative Genome Database.
Results
Alignment Info
Alignment Tree
Full Alignment
Reference sequence (1): Target Identities normalised by aligned length. Colored by: consensus/70% |
cov pid 1 [ . . . . : . . . . 1 . . . . : . . . . 2 . . . . : . . . . 3 . . . . : . . . . 4 . . . . : . . . . 5 . . . . : . . . . 6 . . . . : . . . . 7 . . . . : . . . . 8 . . . . : . . . . 9 . . . . : . . . . 0 . . . . : . . . . 1 . . . . : . . . . 2 . . . . : . . . . 3 . . . . : . . . . 4 . . . . : . . . ] 1486
1 Target 100.0% 100.0% ---------------------------------TGGGCAGACTGGGGACGGGTTGCTGGTTTT-------------------------T----------------------GCCTCTGATAAACCGTGTGACCTCACACAAGGGACTGAGCCTCTCTGAGCCTCCATGGGCAAGAGG-GATAGCATGGGGCGC-TTTCACAGGGTGGCTGTGGGCATTCAGAGCAAGCCTGTCT---GCA--GTGGTCATGCCGTGCCTGGCCTGT------GCAGCTGCTCCAGGGTGCCTGT----------CCCCTCCTCTGTCCCACCCCCAGTGGAGGTGCCCTCTCTGAATGGAGAATAGTGTGGCAGATGTAACCA--GGGCTGCTG----------------------------------------------------------------------------------------------GGCAGACACTGTTTGTAGGATGGGCTGTATATTCA--GGT-CACTCCAGGTGCACCCACTCGC------------TGACCGCAGCCCCCATCCC-A----------------------------------------GGGCTCTCCTGGGCACGTTGTCCCTGGTTCCTGCCTGTCTGGCCTGCAGAGAGCTCCCTGGAGTCACTGCCCTGTGCTGG------------------CCACTGGGCTCAGGATGCCTGCCTGC-T----------------GT-GGACAGGGGCTGGCTGCTGCCGGGTGGCCCCAAAGCCCCAGGTTCCAGGAGA-CCCAGCACACTTGGGGTCTGCAGCTGGCCAGGGAAGGGCCT-AGTCTTAGGA----------GGGGGCAGTGGTGGGAGTGGCTCTGAGCCCACCCTC-CGTGCCTGCGTCCTCTGGGCAGAGG------------------------------------------------------------------------GAGGGGAGCCAGCAGAACAGTCCTTACAGACTCCACGTGCCGCCGAGGACGGAGCAGATGGGCCAGTGTC-CTGGGTCCAGCCCTCCATCTGCACAGCTAATGAGCTGATGACGATGGCGTCCCAGTTCCTGGCACCTTCTCCTGGAGAAGCCATGGGCTGGCCCTGCCCGGGCA-GTGCCCTTTGCTGGGGCA---------------------------------GGTGTGTGTGGGGTGCCTGGGGCC----------------CTCTCAGGGACCCAGGCCCAGTGGCTCCACCTTCATTGAGGGTGGG--CAGGGG----GAGGGGTTGGGGAAGGGGATGAGTA----ATCCAACGTGCCTGTTTCTTCCCGGGATTTTGCTCCCAGCACTGCATACGTGGGCTCCCACC-GGCTGGACGGACT------------------------------------------------
2 Rhinopithecus_bieti-NW_016807514.1-187717_188809 90.6% 84.2% ------------------------------------------------------------------------------------------------------------------------------TGTGACCTCACACAAAAGACTGAGCCTCTCTGAGCCTCCATGGGTGAGAGG-AATAGCATGGGGTGC-TTTCACAGGGTGGCTGGGAGCGTTCAGAGCAAGTGTGTCT---GCAAAGTGGTTGTGCCGTGCCTGGCCCGT------GCCGCTGCTCCAGGGTGCCCAT----------CCCCTCCTCTGCCCCACCCCTGTCGGAGGTGCCCTCTCTAAATGGAGGCCAGTGTGGCAGGTGTAACCA--GGGCTGCTGGGGTCTCTAAATGGAGGTCAGTGTGGCAGGTGTAACCAGGGCTGC-TGGGGTCTCTAAATGGAGGTCAGTGTGGCAGGTGTAACCAGGGCTGCTGGGGCAGACACTCTGTAGGATGGGCTGTATATTCA--GGT-CACTCCAAGAGCACCCACTCGC------------TGACCGCAGCCCCCATCC--C----------------------------------------AGGCTCTCCTGAGCACATTGTCCCTGGTTCCTGCCTGTCTGGCCTGCAGAGAGCTCCCTGGAGTCACTGCCCTGTGTTGG------------------CCACTGGGCTCAGAATGCCTGCCTGC-T----------------GT-GGACAGGGGCTGGCTGCTGCCAGGTGGCCCCAAAGCCCCAGGTTCCAGGAGA-CCCAGCACACCTGGGGTCTGCAGCCAGCCAGGGAAGGGCCT-AGTCTTAGGA----------GGAGGCAGTGGTGGGAGTGGCTCTGAGCTCACCCTC-CATGCCTGCGTCCTCTGGGCAGAGG------------------------------------------------------------------------GAGGGGAGCCAGCAGCACGGTCCTTACAGACTCCACGTGCCACCGAGGACGGAGCAGATGGGCCGGTGTC-CTGGGTCTAGCCCTCCATCTGCACAACTAATGAGCTGATGACGATGGCGTCCCAGTTCCTGGCACCTTCTCCTGGAGAAGCCATGGGCTGGCCCTGCCCGGGTA-GTGCCCTTTGCTGGGGCA---------------------------------GTTTTGTGGGGGATGCCTGGGGCC----------------CTCTCAGGGACCCAGGCCCAGCGGCTCCACCTTCATTGAGGGTGGG--CTGGGG----GAGGGGTTGGGGAAGGGGATGAGTA----ATCCAACGTGCCTGTTTCTTCCCGGGAT------------------------------------------------------------------------------------------------
3 Rhinopithecus_roxellana-NC_044560.1-188045_188808 90.4% 77.2% -------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTAAATGGAG-GCCAGTGTGGCAGGT-GTAACCAGGGTTGCTGGGGTCTCTAAATGGAGGTCAGTGT---GGCAGGTGTAACCAGGGCTGCTGGGGTCT------CTAAATGGAG----------------------GTCAGTGTGGCAGGTGTAACCAGGGCTGCTGGGGTCTCTAAATGGAGGTCAGTGTGGCAGGTGTAACCA--GGGCTGCTGGGGTCTCTAAATGGAGGTCAGTGTGGCAGGTGTAACCAGGGCTGCTGGGGTCTCTAAATGGAGGTTAGTGTGGCAGGTGTAACCAGGGACTGCTGGGGCAGACACTCTGTAGGATGGGCTGCATATTCA--GGT-CACTCCAAGTGCACCCACTCGC------------TGACCGCAGCCCCCATCCC------------------------------------------AGGCTCTCCTGAGCACATTGTCCCTGGTTCCTGCCTGTCTGGCCTGCAGAGAGCTCCCTGGAGTCACTGCCCTGTGTTGG------------------CCACTGGGCTCAGAATGCCTGCCTGC-T----------------GT-GGACAGGGGCTGGCTGCTGCCAGGTGGCCCCAAAGCCCCAGGTTCCAGGAGA-CCCAGCACACCTGGGGTCTGCAGCCAGCCAGGGAAGGGCCT-AGTCTTAGGA----------GGAGGCAGTGGTGGGAGTGGCTCTGAGCTCACCCTC-CATGCCTGCGTCCTCTGGGCAGAGG------------------------------------------------------------------------GAGGGGAGCCAGCAGCACGGTCCTTACAGACTCCACGTGCCGCCGAGGACGGAGCAGATGGGCCGGTGTC-CTGGGTCCAGCCCTCCATCTGCACAACTAATGAGCTGATGACGATGGCGTCCCAGTTCCTGGCACCTTCTCCTGGAGAAGCCATGGGCTGGCCCTGCCCGGGTA-GTGCCCTTTGCTGGGGCA---------------------------------GTTTTGTGGGGGATGCCTGGGGCC----------------CTCTCAGGGACCCAGGCCCAGCGGCTCCACCTTCATTGAGGGTGGG--CTGGGG----GAGGGGTTGGGGAAGGGGATGAGTA----ATCCAACGTGCCTGTTTCTTCCCGGGATTTTGCTCCCAGCACTGTGTACGTGGGCTCCCGCC-GGCTGGACAGACT------------------------------------------------
4 Galeopterus_variegatus-NW_007727608.1-227998_228626 91.7% 57.1% -----------------------------------------------ACGGGCCCCTGGGTGG-------------------------G----------------------TCCTTCGATGAGCTGTGTTACCTTGCTCAGGGAACCCACCCTCCCTAAGCCTACATGG------------------------CCTCCACAGGGCAGCTGTGAGCATTCGAAGCGAGTGTGTCT---GCAAAGTGCCTGTACCCTTGTGGCCGCCT------GTCT---CCTCCTCTCCTCCTG----------TCCCGCCTG---TCTCCTCCTGGCTGAGATGCTCTTTACGAGTGGAGGACACTGTGGCCGGTGTAGACA--GGGCTGCCAGTGTAGATGGGGCTGCATGTGCAGCCAG------------------------------------------------------------------TCCACTCAGCCCTTGTAGGACTGAATGG--GTGTTTGTGTTGCTCCAGGTACACCCCAGGACAGGGCA-------GGACCCCCATGGGTGGGCT-G----------------------------------------GCCCTGAGGAGGGCCAGGCTCAGCGTGTTCCTGCCTGTCTGGCCTGTAGGGAGCTCCACGAAGCTGATGCCCTGGGCTGG------------------CCACTGGGCTTGGGATGCCACCTACT-G----------------ACCAGGCAAGGGCTGGCTGCTGCCAGGTGGCCCCAAGGCCCCAGGTTCCAAAGAGACCCGAGGTGCCTGGGGTCTGCAGCTGGTGGGGGGAGAGCTCTGGTCTTAGAAGGGTAGGGGGGCGGCCGCCAGCAGCAGTGGCTGTGAGCCCACCCTC-CATGCCTCCGTCCTCTGGCGGGG----GCTCGGCTGGC--------------------------------------------------------ACAGGGAGGTGTCACAGCGGTGTGGCCTTCCGTCTCCACGTGCAGCGA-GAACAGAGCAGATGGGCTGGTGTC-CCAGG-TCCGGCCTCCATCTGCACAGCT-AAGAGCTGGTGACGAAGGTTTCCCAGCTCCTGGCACCTTCTCCTGGAGAGCCGTGGGCCAGCCCCTGCCCGGGCA-GTGCCCTCTCCTGGGCAG---------------------------------GGCGGGTG-----------GTGCAGGGGCTGCTCTGGGGCTGA------------GCCTGGCGGCTGCACGTTCCCTGCGGGTTGGCT---GGG----GGAGGGCCTAGGAGGGGGATGAGCA----ATCAGATGCGCTTGTTTCTTCCTGGGATTGTGCTGTCAGTGCCGCGCATGTGGGCTCCTGCC-AGCTGG-------------------------------------------------------
5 Castor_canadensis-NW_017871110.1-156377_157356 83.8% 42.8% ----------------------------------TGGTGGGGAGGAGTTGCGGGAGCTTGGAGGGCTGTGTGA---CCTCACACGGAGGACCCTCTTT-------------GAGCCTCCAGAGAC-CAGAAAGACAGTGT----GG-------------------------GG-----------------CCACTTCATAGAGCAGTTTGTGAACATTCAAAGCCAGTATGC----CTGCAAAGTGTCACTCCATGCCTGGCCTGT------GCGGCTGCTCCAGGAATGTCTGTTCCCTTCCTGCAGTCCCTCCTCCCTTCTCCAGCTGAGATGCCCTTTATGAATGGAGGACAGTGTGGCTGGTGTGTCCA--GGGCTGCCAATGCACACTCCATCGGG-CCCTGTGGGACCCAGTGACTTCGTCTT----------------------------CAGGTGTTCTCACTCCC----TAACCACAGCCTCC-------------------------------------ACCCCAGGGCAGCAGCA-------AGGCT----GCTTAAGTAC-A----------------------------------------TTGCTTGGGGACGGCCTGGCCAGTATTTTCCTTCTTGTCTGACCTGCAGAGAGCTCCATGAAGTCAGTGCCCTAGGTTGG------------------CCACTGGGCTCAGGACACCTGCTTGCTG-GTGG-----------GCAACAGTGATACTGTCAGCTGCTCCAAGGCCCCAGGGTCCAGGGTTCAGGGAGACTGGACACACTTGGGGTTTGTAGCTGCTGGAGGGAAGAACCCTGGTCTTAGAAGGGGAGGGTTGGTGGCAGCAGA---GCAG-CTCCAAGCC-CACCTC-TTTGCCTCCATCCTC----------------------------------------------------------TGGGC--AAAGGACTGGCACCCGGAAGGAGCTTCAATGGCACAGCCCTTGCAGTCTCAATGTGCAGCCGAGGATGGAGCAGATGGGTCTGCGTC-CTGGGTCCAGCCCTCCATCTGCACCGCTAATGAGCTGATGACGAAGCCTCCCCAGCTCCTGGCACCTTCCTTGGAGAGTGGTGGCTCCTGCTGGGCAGCGCCTTCTCCTGGGGCAGGT---------------------------------------------------GTGGGGTTCAGGGGCCCT--------CTGTGAGGC----CAGAGCCCGTGGCTCTAT-GTCCAGAGA------------------------GGGCTGACGAGCATGAGTAATC----GGACAAGCCTGCTTCTTCCTGGGAGTTTGCTTCCAGCACAGTACACGTGGGCTCCT-----------------------------------------------------------------
6 Tupaia_chinensis-NW_006198262.1-168323_169377 91.8% 58.8% ------------------------------------------------------------------------------------------------------------------TCTGATGAGCTGTGTGATCTTGCACAAGGCACTAACCTTCTCTGAGCCTTTGTGGACCAGAGG-GATAGTGTGGGACTGCCTCTGTAGGGTAGTTGTGAGCACTCACAGGGCTTGTGTCT---GCTAAGTGCTCACACCACGCCTGGCCCAA------GTGGCTGTTCCAGGGTTGCCTG----------ACACTTCTC---TCCTCCCTTCTCTGAGATGCCCTTTATGAATGGAGTGCAGCATGGTAGGTGTAGACA--GGGCTGCCAATACAGACACCTGCTCTGCCCTC---AT------------------------------------------------------------------GGGAGTAACACGCTGCATGTTCAGGTGGACCTGGGTGCACACACTCCCTGATCACCTAGGGTGGGACA-------GGCCTTCCATGGGTGGATT-G----------------------------------------CCTCTGTGAAGGGCCTGGCCCACCATGTTCTGGTCTGCCTGGCCTGCAGAGAGTTTCATG----GAGTGACCTCGGCTGG------------------TTACTGGGCTTAGGACGCCTGCCTGC-T----------------GGCTGGCAGTGACTAGCTCCTGCCAAGTGGCCTCAAGGCCCCATGTTTCATGGGGACCATACATGCCTGGGGTCTATAGCTGGTGAAGGAAGAACCCTAGTCTTAGGAGGGAGTGGATGGCAG---CAGTAGGAGTGTCTGCGAGTTCACCCTC-CATGTGCTCATCTTCTGGGGCCGAGGGCTTGGCAGCCC--------------------------------------------------------CCTAGGAGGAGACACAGCAGCATGGCCTTTGGTCTCAATGTGCAGCCGAGGACAGAGCAGATGGGCCAGGAGTCCTGGGTCCGGCCTTCCATCTGCACAGCTAATGAACTGATGACGATGGTTTCTCTGCTCCTGGCACCTTCTCTGTGGGCCAGCCCTG----------CCCGACTA-GTGCTGTCTCCTGGGGCA---------------------------------GGGGTTTGGGCAGGCAGGGTTGAAGGGGGTAGTGTGTGGAGGGCCCTCTCTGCCGAGCCTACAGATCCACACTCCATGAGGGTTGGGCTGGGCG----AGGGGGCTGAGGAGGGGAATGAGTA----ATCGGACATGTCTGTTTCTTCCTGGGATTTTGCTTCCAGCACAGCGT-----------------------------------------------------------------------------
7 Propithecus_coquereli-NW_012152752.1-164311_164910 77.2% 34.9% --------------------------------------------------------------------------------------------------------------------TGGCGATTTGTTTGGATCCTGGTTGTTCTG-GGCCCAGTTCTGCCCTCTGACT-----------------AGTGTCA-TCT-GGGGAGGGGCTGAGCTAGCA-------TGTGGGGA----CATGGGCGT------CGCAGCTGGGCAGACTG---GGAGCGGGGCCACAGTGGGGCCTA--------CGATGCCTGCGTGACCCCCAGAAGGCACCGATCCTCTCTGAGCCC-CCACGGTTGGGATGGGCAGCGTG--TCTGTGAAGCGCCCGCT----------GGCACTG---CTCCA-------------------------GGA--------AGGCCAGCCCCTCCCGCCCCC----TCCTGGGCTGCCCTTTATGACTGGCGGGCAGCGTGGTGGCGCAGACA-CGGCTGCCAGCGCAGAC--TCTG----GCCCTCG-CAGGACGGCTGTGTGTCTGGGTGGCCCTGGTGCCCCCCCTACCCCCGACCGCAGCCCCACC-CGGGCCTGGCCCGGCACGTCCCTCCCCTCCTGGCCTGCAGAGAGCTCCCTTG---------CCTGGGCTGG------------------CCACTGGGCTCAGGACGCCTGCCTGC-----------------------------------------------------------------------------------------------GACTGGACAGGGGCTGCTGCT---------------------GCCAGG--------GCTT----CCTGGGGACCTGA----------CCCACCTGGGGTCTGCGGC----CAACGA---GGGCAGAGCCCTGGTCCTGGGAGGGCAGTGGCTGGGAGCCACCCCCCACCTCCGTCCCCTG-GCCACAGCAGCATGTCTTAGCAGTCTCCACGTGCAGCGGAGGACGGAGCAGATGGGCCGGTGTC-CTGGGTCTGGCCCTCCATCTGCACAGCTAATGAGCTGATGACGATGGTTTCCCGGCTCTTGGCACCTTCTGGAGAGCCGTGGGCCGGCCCTGTCCCGGCAGTGCCCCTCCTGAGGGCAGGCCT---------------------------------------------GTGGGGGGTGCAGGGGCCTCCTGGGGGCCAAGC---------------------CCAGGGGCC-CCACAG-----TCACAGGGCGGCTGGGGGAGGGGACGCCAGTGAGTA----ACTGCATGAGCCTGTTCCCTCCTGGGATCTTGCTTCCAGCACCGCGTACGTGGGCTCCTGCT-GGCTGGACAGACTTCCTGTGTGGGAAAGGGTCAGGCACGGGCCCTGCATCCA---------
8 Lemur_catta-NC_059130.1-162481_163073 75.2% 33.8% -------------------------------------------------------------------GGGTTTC--CGCGGGGGTGGGA-----------------GCTCGCCTTCTGGTGATTTGTCTGGATCCTGGTTGTTCTG-GGCCCAGTTGTGCCCTCTGATT-----------------GGAGTCA-CCC-CGGGGAGGGCTGTGCCAGCA-------CGTGGGGA----CATGAGCGT------CGCTGCTGGGCAGACTG---GGGCCGGGGCCACAGTGGGGCCTG--------CGATGCCTGTGTGACTCCGAGAAGGCACCGACGCTCTCTGAGCCC-CCACGGGCGGGAGGGGCAGCGTG--GGGCGGCTGCGAGTCTC----------CAAAGCG---CGTGT-------------------------CTG--------TG--AAGTGCCCTCCCCGCCC----TCCCGAGCTGCCCTTA-TGAATGGAGG----------------------CCGCGTGGCCGGGCAG--ACTG----GCCCTCG-TAGGACGGCTGCGTGTCTGGGTCACCCTGGTGCACCCACCCCC--CGACCACAGCC------CCACCCAGGCCCGGCACGTTGCTCCCCTCCTGGCCTGCAGAGAGCTCCGTGGAGCCACCGCCCTGGGCTGG------------------CCCCCGGGCCCAGGACGCCTGCCTGC-----------------------------------------------------------------------------------------------CACCGGGCAGGG------------------------------CTGGCC--------GCTT----CCTGGGGCCCTGA----------CACACCGGGGGTCTGCAGC----CGACGA---GGGCAGCGGCCTGGTCCCGGGAGGGCAGAGGCTGAGAGCCCCCCG---CCCCCGCCCCCCG-GCCACAGCAGCGGGTCCCAGCAGTCTCCACGTGCAGCGGAGGACGGAGCAGATGGGCCGGTGTC-CTGGGTCCG-GCCTCCATCTGCACAGCTAATGAGCTGATGACGATGGTTTCCCGGCTCTTGGCACCTTCTGGAGAGCCGTGGGCCGGCCCTGCCCGGGCAGTGCCCCTCCTGGGGCAGG--CG---------------------------------------------TGGGGGGGTGCAGGGACCTCCTGGGGGCCAAGC---------------------CCAGGGGCC-CCACAG-----TCACAGGGTGGCTGGGGGAGGGGACGGCAGAGAGTA----ACCGCATGAGCCTGTTCCCTCCTGGGATCTTGCTTCCAGCACCGCGTACGTGGGCTCCTGCC-AGCGGGACAGACTTCCTGTGTGGGAAAGGGTCGGGCACGGGCCACGTGGGGTTGCTGGG--
9 Microcebus_murinus-NC_033661.1-161425_162085 76.0% 33.9% --------------------------------------------------------------------------------------------------------------------------------------------GTTCTG-GACCCAGTTCTGCCCTCTGATT-----------------GGTGTCG-CCCCGGGGAGGGGCTGTGCCAGCA-------CGTGGGGA----CATGGGTTT------CACCACTGGGTGGACTG---GGGCCAGGGCCACGGTGGGGCCTA--------TGACGCCTGTGTGACCCCGAGAAGGCGCTGACCCTCTCTGAGCCC-CCACGGTCAGGAGGGGTGGCGTG--GGGAGCCTCCAAAGCGC----------GTGTCCG---TGAAGCGCCCCGCTGGC----CGCTGCTCCAGG--------AAGGCCGGCCCCCCCACACCC----TGCTGAGCTGCCCTTTATGAATGGCGGGCGGCGTGGCGGTACAGA-------------------C--TCTT----GGCCCTC-TTAGGACAGGCTGTGTCTGGGTCACCCTGGTG---CCCCACCCCCTGACCACAGCCCCACC-CGGGCCTGGCCCGGCACGTCCCTCCCCTCCTGGCCTGTAGCGAGCTCCGTGGAGCCACCACGCTGGGCTGG------------------CCACTGGGCTCAGGACGCCTGCCTGC-----------------------------------------------------------------------------------------------CTGCGGCTGGGCAGGGGCTGGCCGCTGCCAGGGCC--CCCAGGCCCCG--------GCTT----CCTGGGCACCTGA----------CTCACC-CGGGTCTGCAGCCGACGAGGGC---AGACGGAGCCCTGGTCCTGGGAGGACAGTGGCTGGGAGCCCCTGCCCGCCTCCGTGCCCTG-GTCACAGCAGCCTGTCTTAGCAGTCCCACGT--GCAGCGGAGGACGAGCAGATGGGCCGGTGTC-CTGGGTCCGGCCCTCCATCTGCACAGCTAATGAGCTGATGACGATGGCTTCCCAGTTCTTGGCACCTTCTGCAGAGCCGTGGGCCGGCCCTGCCCGGGCGGTGGCCCTCCTGGGACAGGCATG---------------------------------------------G-GGGGAGTGCAGGGGCCTCCTGGGGGCTGAGCCCA--------GGGGCTGGGCAGGGGCTGG-CCATAG-----ACACAGGGAGGCTGGGGGAGGGGACGGCAGAGAGTA----ACCGCACGAGCCTGTTCCCTCCTGGGGTCTTATCTCCAGCACCGCGTACGTGGCTCCCGC-C-AACTGGACAGACTTCCCATGTGGGAAAGGGACAGG--------------------------
10 Otolemur_garnettii-NW_003852462.1-161381_162208 74.8% 32.5% -------------------------------------------------------------------------------------------------------------------------------------------------------CTCTGGTTGGGTCACACT-----------------GGGGAG--GGGCTAGGGGAGCCTTGAAGAACA-------CGTGGGGG----CATGGGCAT------CGCTGCTGGGCAGACTG---GGGACGGGTCATGGCAGTGCCTCA--------GAGGAGCCCTGTGACCCAGTGAGCCTCCATGAGAGGGATGGCGTGGGCCGCCTCCGGAGGGCAGCTGTG--AGCCT--TCAAAAGGAG----------TTGTCTGCGAAGCACCGTGCCCCTGGG----CGCTGCTCCAGGGATG-CCAGGTCCCTCCCTTCTCCCTCCC----CACAGAGATGCCCTTTATGAATGGAGGACAGCATGGCCAGTCCAGACAAGGTCACCAGGGCAGACACTCTGTTCAGCCCTTGCAGGATGGGCTGTGTGTCCGAGTCACCTG-GTGTA--CCCATTCTCTGACCACAGCCCCACCTTGGGCCTGGCCTAGCA--------TGTTCCTTCCCTGCCAAGAGCTCTGTGGGGTCACTGCCTTAGGCTGC------------------CCACTGAGCTTGGGATGCCTGTCTTC-----------------------------------------------------------------------------------------------TGACTGTTTGAGAGCTG---GCTGCTGCCAGAGTTACCAAGGAACCTG--------ATTC----CTGGGGCACCTGA----------CACACCTGGGGTCTGTAGCCAACAAGGAC---AG-----AGCCTGGTCCTAG-----------AAGAGCCCACCTTCTCTACTCCATCCCCTGGCCATAGTGGCATGGTCTTACCAGTTTACACGTGCAGCCAAGCACAGAGCAGATGGGTTGGTGTC-CTGGGTCCGGCCCTCCATCTGCACAGCTAATGAGCTGATGACGATGGTTTCCCGGCTCTTGGTACCTTCTGGAGAACTGTGGGCTGGCCCCTGCCTAGGCAGTATGGGGTGCAGGGAGCCCTG---------------------------------------------TTGGGG----------------------------------------GCCTGAGTCCAGCAGCTCCATGTT-----CACAGGGTGGGCTGGGGGAGGGGATGGGAGTGAGTA----ATTTGATGAGCCAGTGTCTTCCTAGGGATTTGCTTCCAGCACAGCATACGTGGGCTCCTGCT-GGCTGGACAGACTTCCTATGTGGGACAGGAGCAGGCAGAATAGGGTTGGTGAGCACCACCC
11 Nannospalax_galili-NW_008355419.1-155272_156260 83.3% 40.0% --------------------------------------TGGGTAGGGATGGGAGAGCTTGAAGGGCTGTGTGACCTCCTCACACTAGGAACCCTCTCT-------------GAGCCTTCAGGGTTGGAAAAGGATAGTGT----GG-------------------------GG-----------------CTACCTCATAGGGCAGCTTGTAAGCATTCAAATCCAGTGTG------TATGCAGTGCCATGCCATGCCTGGCCTCT------ATGGCTGCTCCAGGAATGCCTGTCCCTTCCTTCCTGCCCCTCCTCCCCTCCCTGGCTAAGATGCCCTTTATGACTAGAGGACAGGATGGCCAGTGTGGACA--GGGCTACTGGT--GCGCTCTGTTGGGCCCTTGTGGGACCCAATGGCCTAGTGTT----------------------------TGGATGCACCCCCTCTC----TGACCACAGCCCCC-------------------------------------ATCCCAGGGTGGCAGCA-------GGGTT----AGTTGACCTG-A------------------------------------------------GGAAGGTCTAGCTGGTGTGTTCATGCTTGGTTGGTCCACAGTGTGCCCCATGGAGTCTGTGCTCTGGTTGGG------------------TATTTGGC-TTGGAACACC-----------TGC---------------TCGTTAAGGGGGAAGAGGCCATGTAGCCCTGAGGCCCCAGGGTCTGGAAGATGGGACACATGGGAGATTTGTAGCTGCGTAAGGGAAGAGCCCTGGTCTTAGGAAGGGAGGGGGTAGTGGTGGCAG---GAAGACTACAAACC-CACCTC-TTTGCCTCCATCCTC----------------------------------------------------------TAGGTGAGGGCTGGTGGCCTCAGGGGAGAGATGCAACAGCAGGGGCCTCGCAGTCTCAATGTGTAGCCGAGGATGGAGCAGATGGGCCGGCGTC-CTGGGTCCAGTCCTCCATCTGCACCACTAATAAGCTGATGACGAAGGCTCCCCAGCTCCTGGCACCTTCTCTGGAGAGCCAGGCAGCCTCTGCCCAGGGAAACGCCCTCTCTTGGGACA------------------------------------------------GGTGTGAGGGTAGGGGGCCT--------ATCCTGGGC----CAGAGCCTGTGGCTCCAG-CTCAGAGAGTTG----ACTGGAGGAGGGTTGGGGAGGGGGAATGAGTAATCAGAG----GAGGGAGGCTGCCTCTTCCTGGGAGTTTGTTTCCAGCACAGTGTATGTGGGCTCCT-----------------------------------------------------------------
12 Ceratotherium_simum-NW_004454172.1-169377_169696 82.5% 49.8% -----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAGAGTGGGACAGCCTGGGGTCACCTTCGTAGGGCAGCGGTGAGCAGA------------------------G---------TGTGCCTGGCCCGT------GTGGCTGCTCCAGGAACGCCTGTTCC------CTCCTGCCC--TCCCCTCCCCGGCTGAGATGCCCTTTATGAATGGAGGACAGTGTGGCAGGTGTAGACG--GGCT-GGTGGTGCAGACACTCCCTGCTTGGCTGTGTGTTTGGGTCACCCCCAGGTG--------------------------------TCACCACTCCC----TGGCCGCAGCCCCC-------------------------------------ACCCGAGTGCGGGGCAG-------GGCTCCCACGG-GTGAGTG-G----------------------------------------TCCCTGGGGAGGGCCTGGCCCAGCACGTTCCTGCCTGTCTGGCCTGCAGAGAGCTCCATGGAATCAATAGCCCTGGGCTGGCCCAGCCTCAGTGAGGACCCCTGGGTACAGGAAACCTACCTGTTG----------------GCCGCATAGGGAGTAGCTGCTGCCATGTGGCCCCAAGGCCCCAGGGTCCAGGGAGACCCGACACACCCAGGGTCTGCAGCCAGCGAGGGGAGAGCTCTGGTCTTGGGAGGGGAGTG-GGGTGGCAGCGGC-AGAGCAGCTGTGAGCTCACCCCC-TGTGCCCCCGTGTTCTGGGCTGAGGGCTCGGCCAGTCTTGAGGGAGGGGACATGTCACCTGGCCCTTATCT-GCTGGGACAAACA---------TGCCTGCGG-CCCCTCCCGGGGGGAGAACAGTCTCAAATGTGCAGCTGAGGACAGAGCAGATGGACTGGAGTC-TTGGGTCCGGCCCTCCATCTGCACAGCTAATGAGCTGATGACGACGGTCTCTCTGCTCCTGGCACCTTTCTCCCGGGAAGCCAGTGGATGGCCCCTGCTGGGAAGGGCCCTCTCCCGGGG-CA---------------------------------GGGTGTGTGTGTGTGTGGGTGAAGGGGGC-C--------CTCTTTGGTGCCGA---GGCCAGGGCTTCACAGGG------------------GG----AGGGCATCGAGGAGGGAGATGAGTA----ATCGGAAGTGCCAGTTTCTTCCCAAGACTTTGCTTCCAGCTCGGCATACGTGGGCTCCGGCC-GGCTGGACAGACTTCCTGT------------------------------------------
13 Vulpes_vulpes-NW_020356486.1-175380_175711 83.6% 41.3% ----------------------------------------------------------------------------------------------------------------------------TGTGTGACCACAGGCAAGGCACCAACCCATAAGG--TCTCTTGTGCAAGAGAG-GACCGGCGTGGGGTCCCTTCGTAGGGTGGTTGTGGGCAGA------------------------G---------GGTGCCCTGTCCGT------GCGGGGTCTCCAGGAATGCCTGCCTG------CTCCATACC--CACCCTCCCTCCCTGAGAT-GCCTTTATGAATGGAGGACAGCATGACAGGTGAAGATG--GGGCTGGTGGTGCAGACACCCCTGGCTTGACTGAGCTCTTGGGCCACTCGTG------GGCA--------------------------TCCCCACTTGA----TGACCACAGCCCCC-------------------------------------ATGCCAGTG--TGGGGC-------AGGGTTCCCTTGTCGGGTG-G----------------------------------------TCCCTGGGGAGAGGCTGGCCCAGCACATC-CTGCCTACCTGGCCTGCAGAGAGCTCTGTGGAATCGGCAGCCTGCGCTGGTCAGAG------------CACAGGGTCAGG--GTGTCTGCCTGCTA----------------ACCCAGGAGGGACTGGG------------------TGCTGCCAAGGCCCAGGCTGCA---------------------GCCAGCAAGGGAGGAACCCTGGTCTCAGGAG-GGTGTA-GGGTAGTTGCAACAGGAGCAGAGGGGAGCTCACCCCT-CAGGCACCCACTGTCTGGGTCAGGGTCTCAGCTCA-CCTCGAGGTGGAGATGTGTAGCATGGCCCTGGTCT-GCTGGGATGAATGTGCTGCGCCCCTCCTGCCTCCCCCCTCCGGGAGAGAACAGTCCCAAATGTGCAGCTGAGGACGGAGCAGATGGGCTGGAGTC-TTGGGTCCGGCCCTCCATCTGTACAGCTAATGAGCAAATGGCATGGCTTCCACGCTCCTGG--CACCTTCTCCTGGAGAGCCAGTGGCTGGGCCCTGCGGGAACATGGCCCTCTCCTGGG-GC---------------------------------AGGTGTAAGTGAGGGGGATGCAGAGGGCC-C--------T-CTCCTGTGCA-----GAGGCCAGCCCCATGCTCCTTGAGGGCTGT-TGGGGGC----AGAGGCATCAAGGAAGGGATGAGTA----ATCAGAAGAGCCTGCTTCTTCCTGGGACTCTGCTTCCAACAGAGCGTACGTGGGCTTCCGCC-GGCTGGACGGACT------------------------------------------------
14 Vicugna_pacos-NW_021999318.1-173679_174029 83.6% 44.6% ----------------------------------------------------------------------------------------------------------------TCTCTGATGAGCGGTGTGACCTCAAGCACGGCACTGGCCCTCTCTGAGCTTCTGGTGGAAGAGAGGGATTGCATGAGTTTGCCTTCATATGGTGGCTGTGAGAAGA------------------------G---------TGTGCTGGGCCCGT------GTGTCTGCTCCAGAAATGCCTGTCCC------CTCCTGGGC--CTCCCCTCCCGGCTGAGATGTCCTTTATGACTGGAGGACAGCGTGGCAGGTGTAGACA--GGACTGGTGGTGCAGACACTCCTGGCTTGGCTGCGTGCTCAGGCCCCCAGGGGGGC---------------------------------ACCCACTCCT----CAACTGCAGC-------------------------------------------CCCTGGTACGGGGCA-------GCGTTCACATGGGTGGGTG-G----------------------------------------TCCCTGGGCAGAGCCTGGCCCAGCCCGTTCCTGCCAATCTGGCCTGTAGCGAGCCCCATGGACTCGGCATTCCGGGGCCAGCCCAGCCTCGGCCAGGACCACTGGGTGCAGGATGCCTCAAAGCCC---------------------------------------------------------CAAGGTCCGGGGAGTGTCGACACAGCCAGGGTCCGCAGCCAGCGAGTGAAGAGTCTGGTCTTGGGAGGGGAG-TG-G-GTGGCAGCAGCAGGAGTAGCTGGGAGCCCACCCTC-CATGC-CCCATC-----------------CTCTGGGCTCCAGGGAGGAGGCATGCGACATGGCCCTCATGT-GCTGGCACGAGCG---------TGCTGGCGGCCCCCTCCCAGAGAGAGAACAGCCTCAAACGTGCAGCCGAGGACAGAGCAGATGGCTGGAGTCT-TGG--GTCCGGCCTCCATCTGCACAGCTAATGAGCTGATGGTGATGGTTTCGCCGCTTCTGTCACCTTTCTCCTGGAAAGACAGTGGCTGGACCCCTGCCAGGAAGTGCCCCCGTCCTGGGGC---------------------------------AGGGGGTGGACGGGGGGCTGCGA-GGGGC-C--------CTCTCCTGCGCTGTGCCAAGGCCGGCCCCCCATGCACAGAGAGCTGTCGGTGGGA----GGGGCGCTGAGGAGGGGGATGAGTA----ATGCAAAATGCCTGTTTCTTCCTGGGACTTCGCTGCCCGCCCGGCATACGTGGGCTCCCTCC-GGCTGGATG----------------------------------------------------
15 Odobenus_rosmarus-NW_004450599.1-174575_174899 84.2% 45.0% -------------------------------------------------------------------------------------------------------------------------AGCTGTGTGACCACAGGCAAGGCACCAGCCCTCTCTGAGTCTCTTGTGCAAGAGAGGGACAGCATGGAGTTGCCTTCGTAGGGTGGCTGTGGGCAGA------------------------G---------CGTGTCCTGTCTGT------GTGGATGCCTCGGGAATGCCTGTCTC------TTCCACACC--TTCCCTGCCTCCCTGGGATGCCCTCTATGAATGGAGGACAGGGTGCCAGGTGGAGATG--GGGCCGGTGCTGCAGAAACTCCTGGCTTGGCTGTGTGCTTGGGGCACTCGTA------GGTA--------------------------TACCCACCCGA----TGACCACAGCCCCC-------------------------------------ATGCCAGTG--TGGGGC-------AGGGCTCCCATGGTGGGTG-G----------------------------------------TCCCTGGGAAGAGGCTGGTCCAGCACATTCTTGCCTACCTGGCCTGCAGAGAGTTCGGGGGAATCAGCAGCCAGCCTTGGTCAGAA------------CCACGGGGTGCTGGATGCCTCCGTGCTA----------------GCGGAGTGGAGGCTGGC------------------TGCTCCCAGGGTCCAGGGAGGCCTGACACACCCCGGGTATGCAGCCATCAAGGGAAGGGCCCTGGTCTTGGGAGGGGAGTG-GGGTGGCAGCTGCAGGAGCAGATGTAAGCCCACCCTT-CATGCCC---------------------CCACTGT-CTGGGAGGGGGAGACGTGTGGCGTGGCCCTTGTCT-GCTGGGGTGAGTGTGCT--------CCCCCCCCCGCCCCCCGGGAGAGAACAGTCTCAAATATGCAGCTGAGGACGGAGCAGATGGGCTAGAGTC-TTGGGTCCGGCCCTCCATCTGTACAGCTAATGAGCTGATGGCGTGGTTTCCATGCTCCTGG--CACCTTCTCCTGGAAAGCCAGTGGATGGGCCCTGTGAGGAAGTGCCCCTCTCCTGGG-GC---------------------------------GGGGCGTGCGTGATGGGGAGGCAGAGGGC-C--------C-TCTCGGTGCA-----GAGGCCAGCTCCACACTCCTTGAGGGCT-G-TCGGGGG----TAGAGGCATCAAGGAAGGATGAGTA----ATCAGAAGTGTCTTTTTCTTCCTGGGACTTTGCTTCCAGCAGACGTG-----GGCTTCTGCC-GGCTGGATGGGCTTCC---------------------------------------------
16 Ursus_arctos-NW_020656172.1-174562_174887 84.3% 42.4% TGGAGAGCATGTGTGGGAGCAGGGTCATCACTGCCGGCTAGACTGAGGGTGAGACCCCGCAGG-------------------------T----------------------GCCTTGGGTGAGCTGTGTGACCACAGGCAAGGCTCCCACCCTCTCTGACTCTCTTGTGTAAGAGAGGGATAGCATGGAGGTGCCTTCGTAGGGCGGCTGTGGGCAGC------------------------G---------TGTGTCCTGTATGT------GAGGATGCTTCGGGAATGCTTGTCCC------CTCCCCGCC--CCCCC---CCCACTGAGGTGCCCTCTACGACGGGAGGACAGTGGGGCAGGTGGAGATG--GG-CCGGCACAGCAGACACTGCTGGCTTGGCTGCGTGCTTGGGCCACTCACTGATGACCCGG--------------------------TGACCACCCGA----TGACCACAGCCCCC-------------------------------------ACGCCAGGG--TGGGAC-------GGGGCTCCCGTGATGGGTG-G----------------------------------------TCCCTGGGGAGAGGCTGGTTGAGCACATTCCTGCCCATCTGCCCTGCAGAGAGCTCTGAGGAATCAACAGCCAGACTTGGTCAGAA------------CCGCGGGCTGCAGGATGCCTGCCTGTGA----------------ACGGAGTGGGGCCTGGC------------------AGCTCCCAGGGTCCAGGGAGGCCCGACACACCCAGGGTGTGCAGCCAGCAAGGGAAGGGCCCTGGTCTTGGGAGGGGAGGG-GGGTGGCA---------------------------------------------------------------------------------------------------TG-GCTGGGGTGAGTGTGCT--------TCCCCCCCCCCCCCCCGGGAGAGAACAGTCTCAAATGTGCAGCTGAGGACGGAGCAGATGGGCTGGAGTC-TTGGGTCCGGCCCTCCATCTGTACAGCTAATGAGCTGATGGCGTGGTTTCCATGCTCCTGG--CACCTTCTCCTGGAAAGCCAGTGGATGGGCCCTGTGGGGAAGCGCCCCTCTCCCGGG-GC---------------------------------AGGGCCTACGTGAGGGGTGCTGAGGGCCC-T--------C-TCTCG-TGCA-----GAGGTCAGCTCTGCGCTCCTTGAGGGCTGT-CGGGGGG----TAGAGGCATCAAGGAGGCATGAGTA----ATCAGAAGTGTCTTTTTCTTCCTGGGACTTTGCTTCCAGCAGACGTG-----GGCTTCTGCC-GGCTGGACGGACTTCC---------------------------------------------
17 Balaenoptera_acutorostrata-NW_006725355.1-171015_171660 83.3% 44.0% ----------------------------------------GACTGAGGATGGGTCCCCGCCGG-------------------------T----------------------GCCTCTGATGAGCTGTGTGACCTCAAGCAAGGCACTGACCCTCTCTGGGCCTCTCACGGAGGAGAGGGACAGCATGGGGTTGCCTTCATAGGGTGGCCTTAAGAAGA------------------------G---------TGCACCTGGCCCGT------GTGCCTGCTCCAGGGATGCCTGTCGC------CTCCTG--------CCTCCCGAGATGAGTTGCCCTTTATGAATGCAGGACGGTGTGGCGGGTGTAGACG--GGGCTGGTGGTGCAGACGTTCCCAGCTTGGCCGGGTGCTCAGGCCACCC-CCGGTG--------------------------------CACCCACTCCC----TGACCGCAGCCCCC-------------------------------------AGCGC-----AGGG-CA-------GGGTTCCCATGGGTGGGTG-G----------------------------------------TCCCTGGGGAGGGCCTGGCCCAGCACATTCCTGCCAATCTGACCTGCAGAGAACTCTGTGGAATCAACGGTCCTGGGCCGGCCCGGCCTCGTTCAGAACCGCTGGGTGCAGGATGCCTGCTTGAAG----------------ACGGTG-CAGGAATGGCCGCTGCCATGTGGCCCCAGGGCCCCAAGGTCCAGGTAGCCCCGACATCGCCAGTGTCTTCAGCCAGCGAGGGAGCAGCCTGGGCTTGGGAGGC-GGGTG-GGGTGGCAGCAGG-AGCCGC----CGTGAGCCCACCT-CCGTGCCCCGTCCTCTGGGCTGAGGGCTCGGCCCACCTCGAGGGTGGGGATGTGCGGCGTGGCCCTTATCT-TCTGGGACGAGCG---------TGCTGGGCC-CCCCTCCCAGGGAGGGAGCAGTCTCAAGCGCGCAGCTGAGGATGCAGCAGATGGCTGGAGTCC-TGG--GTCCGGCCTCCAGCTGCACAGCTGATGAGCCGATGGCCGAGGTCTCGGCTCTCCTGTCACCCGTCTCCTGAAAAGCCAGTGGTCCGGCCCCCACCGGGAAGCGCCCCTCTCCAGGGAC---------------------------------AGGGTGTGGGTGAGGGGCACGCGGGGGCC-C--------CTCCTGTGCCCTGC---CCGGGCGGCTCCACGTTCTCTGAGAGCTGTCGGTG-GG----AGGGGTTTGAGGTGGGGGATGACTA----ATC-------------------------------------------------------------------------------------------------------------------------
18 Equus_asinus-NC_052181.1-170465_170985 82.4% 46.1% ----------------------GGGCGTCACTGCTGGGTGGACTGAGGACGGGTCCCTGGTGA-------------------------C----------------------GCGTCTGATGAGCTGTG-----------TCACCACCCACCCTATCTGAGCCTCTCGTGGAAGAGCTGGGCAGCCTGGGGTCACCTTCATAGGGTGGCGGTGAGCAGA------------------------G---------TGTGCCTGGCCTGT------GTGGCTGCTCCGGGAACGCCTGTTTG------CTCCCACCC--TCCCCTCCCCAGCTGAGATGCCCTTTATGAATGGAGGACAGTGTGGCAGGTGTAGATG--GGCT-GGTGGTGCAGACACTCCTGGCGTGGCTGTGTGCTCGGGCCACCCCCAGGTA--------------------------------TACTCACTCCC----TGACCCCAGCCCCC-------------------------------------ACCCCAGTGCGGAGCAG-------GGCTCCCATGTGGGGGGTG-G----------------------------------------TCCCTGGGGAGGGCCTGGCCCAGGACGTTCCTGCCTGTCTGGCCTGCAGAGACCTCCATGGAATCAATAGCCCTGGGCCGGCCCAGCCTCAGTCAGAGCCCCTGAGTGCAGGACCTCTGCCTGCTG----------------ACCGCACAGGGGCTGGCTGCTGCCATGTGGCCCCAAAGCCGCA-GGTCCAGGGAGACGTGACACACCCAGGGTCTGCAGCCAGCGAGGGAAGAGCTCTGTTCTTGGAGGGGAGGGT-----GGCAGGAGC-AGAGTAGCTGCAAGCTCACTGTC-TGTGC-CCTGTGCTCTGGGCCGAGGGCTCAGCCAGTCTTGAGGGAGGAGATGTGGCACGG---CCCTACCT-GCTGGGACGCTCC---------TGCCTGTTG-CC--CCTCCCGGGGAGAACGGTCTCAAATGTGCAGCTGAGGACGGAGCAGATGGGCTGGAGTC-TTGGGTCCGGCCCTCCATCTGCACAGCTAATGGGCTGATGATGACGGTCTTGCTGCTCTTGGCACCTTTCTCCTGGAAAGCCAGTGGACGGGCTGTGTTGGGAAGGGCCCCTCTCCTGGG-GC---------------------------------AGGGTGTGTGTGCGGGGGGTGCAGGGGAC-A--------TTCTCTGGTGCTGA---GGCTGGGGCCCCACGGGG------------------TG----GGGGCATCGAGGAGGGGGATGAGTA----ATCG------------------------------------------------------------------------------------------------------------------------
19 Peromyscus_leucopus-NC_051064.1-162135_162727 77.9% 32.8% ---GCCCCAAGTTCCAAGAATAGGCTGTGCCTTCTTGATTTGTTTGGCGGGTTGATCTGGGGCTGGACTTGTTCTGCTCCGGATTGATATGGATGTTGGAGAGGTGTAGAGAAGCTTAAAGGGCTGTGCGATTCCACGCT----GA-------------------------GGAC-----------CCTCAGACCTGCAGGGGTGGGAAGGGATGGCGTGGGACCGCCGCATAGAGCAACTTGTAA---------GCATTCAAAAACTGTC-TGCAGATTGTTATGCCACACCTGACCTGCCCTCCTGTCCCTCCTCTTCTCTCTGCCTAAGATGCGCTTTATGAGTTGGGGACAGCATGGCCAGTATGGTCA--GGGCTACTAAGGCACACTCTGCTGGGGCCTTGTGGGTCCCAACAGCATAGTATT----------------------------TGGATATACCCCTCCC-----TAGTCTCTAT--------------------------------------------------------------------------------------------------------------------------------------------CCTGGCTGGCCTGCAGAGTGCCCAT--------------------GGGAGTCTTTGCCCA-G-GGG------------------TCACTAGGCTTGGGACACCTGCTTGTTG-AAGG---------------GGCAGGGAATGGATGCTGCCATGTAGCCTTGAGGCACCAGGGTCCAGGGGACTGGACATACATGGGGTTTTCAGCTGCTCAAGGGAAGAGCCCTGGTCTTAGGAGGAGGGAGGTGGCAGCAGGAGG---ACTCC----A---------------------AGCCCA----------------------------------------------------------CCCCCATCTTCTGGTGACCTCAGGAGAGATGTACAACAGCAGAGTCCTTGCAGTTTCAACATGCAGCTGAGGAAGGAGCAGATGGC-TGCTGTC-CTGGCTCTGGCCCTCCATCTGCACCACTAATGAGCTGATGACGAAGATTCCCTAGCTCTTGGCACCGTCCCTGGAGAGTGAGAATGCCCCTGCCCAAGAAAGTGCCCCC-----------------------------------------------TATCTCTGGGCAGATGTGGGTACAGGGGCTC--------GTCCTGGGC----CAGGGCTTGTAGCTCCAC-CTCAAAGAGGTG----GGGGAGG-----GCTGGGTAGAAAAATGAGTAATCAGAG----GAGTGAGCTTGCTTATTCCTGGGAGTTTGCTTTCAGCACAGAGTACGTGGGCACATGGCCGGCTGGACAGACTTCCTGTG-----------------------------------------
20 Chinchilla_lanigera-NW_004955486.1-164548_164834 76.3% 31.9% ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG----------------------------------GAT-GCTGTCCACAGGGCATCTGCGCGGG-------CACCTTCCTCACGGTGAGCAGAGCTTCTTC-AAAAGGGTCTCCATCTGCCCCAGACACAGTGCCGGCTCTGGGCCAGAGGCAGCAGAGGCCGGGAGGGAAGGGGTCCAGTACACCAGGGGCAACTTGGGCGGATGG---CAGAGAGAACTTCCTGATC--GAGTGCTGAGTGCCCT-G-GAGGGAGGAGCCTGCCTCTGGCGATTTGTCTGGACCCTGGTTGTGCCCG-------------------------AGAAAGCCTGTTCT-------------GCTGCCCATAGAATGG----GTGTCAGGGAGGCTCTGGGGAGTTTGGAGAG---------TTGC------ATGACCTCGCATAGGGC-----------ATCCACCCTCTATGAGCTCGGTGGACAGGAGGGACAGTGTAGGGCAC-ATCTCAGGCAG--CTTGTGAGCATGCGAAGCTCATGTGTCTGCAGTGTTGTGAGGTCCCTGGCCTGTGCCCACACCCTCCCCTCCTGGCCGAGAGGCCCTTTATGAATGGGAGAC---AGCAAGTTGGGTGTGGACTGGGCTGCCGATGTGGATACTCGTTGGCCCTTGTGGG-AAGGCCAGGCTGTGTGATTGGGTGCACTCTGCCCTGACCGCAGCCCCCAGCCCTGGGCTCT----------------------GGACACCTGCTTCCTG-----------ATGGGCAGCAGCGG-CCAGCCTGGGGGGAAGACGCAAGAGTGTGGT-CTTCGCAGTGGCAGTGTGCAGTGAAGGTGCAGCAGATGGGCTGGCGTC-CTGGGTCCGGCCCTCCATCTGCACCGCTAATGAGCTGATGACGAAGCTTCCCAGTGCCTGGCACCTTCCCCTAGAGAGCCAGGCAGTGCCCTTTCCTGGAGCAGGTGTGGGGT---------------------------------------------------------------GCCGGGGGG----------CTCTTGGAGGCC-AGAGCCTGGTAGCCCCGATATCAATGAGGC------CACAGG----GGAGGGTAGATGGGAGGGATGAGT-----AATCGGACATGCCTGTTCTTCCTGGGAATTTGCTTCCAGCACAGGCACATGGGC-TCCCATATGGCTGGACGGACTTCCTGTGTGGGATA----------------------------------
21 Ovis_aries-NC_056065.1-163221_164259 84.7% 45.1% ------------------------------------------------------CCCTGGTGG-------------------------T----------------------GCCTCTGATGAGCTGTGTGACCTCAAGCAAGGCACTGGCCCTCTCTGAGCCTCTTGTGGAAGAGAAGGACAGCATGGGATTGCCCTCATAGGGTGGCCTTGAGAAGA------------------------G---------TGTGCCTGGCCTGT------GTGGCTACTCCAGGATTGCCTGTCCC------CTCTCCTGCCCCTCCCCCCACAGCTGAGTTACCTTTTATGAATGGAGGACAGTGTGGCTGGTGGTACAG--ATGG-AATGGCAGTACAGTTCCCAGCCTGGCTGCCTGCTCATGCCACCC-TGGGAG--------------------------------CACCCACTCCC----TGACTACAGCCCCC-------------------------------------AGGG------CAGGGCA-------GGGCTTCCATGGCTGGGTG-G----------------------------------------TCCCTGGGGAGGTCTTGACCTAGCATGTTCCCACCAGTCTGACCTGCGGGGAGCTCT-----------------GGCCTGGCCCAGCCTCCATCAGAGCCTCTGGGTGCAGGGTGCCCACCTGCAG----------------ACCGTG-TGGACGTGGCTGCTGCCATGTGGCCCCAGGACCTCAAGGTCGAGGCAGCCCCAACATGGCCAGGGTCTGCCACCAGCGAGGGAAGAGCCTGGTCCTGGGAGAGGAGTGG--GCTGTCAGCAGA-GGACCCACTGAGAGCCCACCCTC-TGTGC-CCCATCCTCTGGGCAGAGGGCTCGGCCAGCTCAAATAGGGGG----------------CATGCAG-CGTGGCCCTTCTC---------TGCCCTTCTCTCCCTCCTAGGGAGAGAACAGCCTCAAACGTGCAGCCGAGGACAGAGCAGATGGCTGGAGTCT-TGG--GTCCAGCTTCCATCTGCACAGCTAATGAGCGGATGGCGTTGGTTTGGGGCTCCT---------------GGAAAGTCAGTGGCTCAGCCCTCTCTGGGAAGTGCTCGTCTCCTGGGGT---------------------------------GGGGGCGGGCGGTTGAGGGACTTGAGGCC-C--------CTCC--TGTGCCGAGCCCAGGCCGGCTCCAC-ATCACTGA-GGGGTGTGGTGGGA----GGGGCGTTGAGGAGGGGGATGAGTA----ATCGGAAACGTCTGTTTCTACCCGGGACTTCACTTTCTGCTCCGCTGCGTGGG-----------------------------------------------------------------------
22 Mesocricetus_auratus-NW_024429219.1-160912_161518 81.5% 37.0% --------------------GGGACTGTGC--------------------------------------TTGCTCTGCTCCCGAGGGACATGGACGTTGAAGAGGTGTAGGGAAACTAGAAGGGCTGTGTGACTCCACCCT----GAGGATCCTCCCTGAACCTGTGTGGTCGGAA-----------AGGGCCACCTCACAGAGCAGTTCGTAAGCGGTCAAACTCTGTCTGCAGAGCG-----TTGTGC------TGCTGCACCTGGCCCGTGCGGCTGCTCCACAAATGCCTATTCCTTCCCTCCTGTCCCTGCTCTTCTCTCTACCTAAGATGCTCTTTATGGGTTGGGGACAGCATGGCTGGTGTGATTG--AGGCTACTGGGGCACACCCTCCTGGGGCCTTGTGAGATATACCCCTCCCTGGGC----------------------------ACA-----------------------GCCCCTCCC-------------------------------------ACTACAGTGTGGCAGTG-------TGCTT----GGTTGACCCG--------------------------------------------------AGAGAACCTGGCTGGCCTGCAGAGTGCCCAT--------------------GGAGTCTTTATCCT---GGGG------------------TTCCTGGGCTTGGGACGCCAGATTGTTG-AAGG---------------GGCAGGGAACGGATGCTGCCGTGTAGCCTTGAGGTCCCAGGGCCCAGGGGACTGCACATACATGGGC-TTTTAGCTGCCTGAGGGAAGAGTCCTGGTCTTAGGAGGAGAGGGCTAGCAGCAGGAGG---GCCCCAAGCC-----CA------------------CC----------------------------------------------------------TCCATCATCCAGCGACCCCGGGGGAGAGATGTACGACAGCAGAGTCCTTGTAGTTGCAGCGTGTAGCTGAGGAAGAAGCAGATGGGCTGCTGTC-CTGGCTTTGGCCCTCCATCTGCGCCACTAATGAGCCGATGACGAAGGCTCCCTGGCTCCTGGCACCTTCCCTGGAAAGTGAGGAAGCCTTTGCCCAGGAAGGTGCCCCCTCTCTCTGG-----------------------------------------------GCAGGTGTGGGTACAGAGCCCT--------GTCCTGGGCCAGACAGAGCTTGTGGCTCCAC-CTCAGAGGGAGTTGGTAAGGGGAGGGGGGCTGGGTAGAAGAATGAGTAATCAGAG----GAGCGAGCCTGCTTATCCCCGGGAGCTTGCTTTCAGCACAGAGTACGTGGGCTCATGGCCGGCTGGACAGACT------------------------------------------------
23 Meriones_unguiculatus-NW_018657773.1-159917_160497 82.2% 37.2% ---------------------------------------TTGTTTGGCTGATTTGTCTGAGGCTGGTCTTGTCCTGCCCCTGATTGACATG-AACATTAAGAGGGGTCGGGAAGCTGGAGGGGCTGTGTGACTTTATACT----GAGGAGC-TCGCTGAAGCCATGGGGAGGGGACAGGATGGTGTGGGGACACACCACAGGGCAGCTTGTCAGCATTCAGAACAGTGT-------CTGTGGAGTGTCATGCCACACCTGTCCTGT------GTGACTGCTCCGCAAATGCCAGTTCCTTCCCTCCTGCCCCTCTGTCCCTCCCAGCC--------------TAAGATGAGGACAGCATGTCCAGTGTGATCA--GGGCTGCTGGGCCATCAC--------------TGGGACCCAATGCA----ATGT----------------------------TTGGATATGTGCCTCCC----TGACTGCAACCCCT-------------------------------------ATCCTAGTGTGGCAGCA-------GGCTT----GGTTGACCTG-G-------------------------------------------------AAAAGCCTGGCTGGCCTGCAGAGC----------------------CCGTGGAGCCTGTACCCGGCATGGC------------------TACTGGGCTTGGGG-TG----CTTGTT-----------------AAAGGGGCAGGGCAGGGTGCTGCCATGGGGCCCTGAGGGCCTGGGGTCCAGGGGGCTGGACACACACGGGGCTTTCAGCTGCCTGAAGGAAGAGTCCTGGTCTCAGAAGGAGAAGGTGGTGGTGGTAGGA---CTCT-----A---------------------AGCCCA----------------------------------------------------------CCTCCATCTTCTGGTGGCCCAAGGAGTGGCGTGCAACAGAAGGGTCCCTGCGGTTTCAGCATGCAGCTGAGCAAGGAGCAGATGGGCCGCTGTC-CTGGGTCTGGCCCTCCATCTGCACCACTAATGAGCTGATGACGAAGGCTTCCCAGCTCCTGGCACCTTCCCTGGAGAGCCAGCAAAGCGCCCCCTCTCTCCAGGCAGCT--------------------------------------------------------------GTGGGTACAGGGGCTT--------GTCCTGGGC----CAGAGCCAGTGGTCCCAC-CTCAAAGAGAGTGGGCTGGGGGA---GGCCTGGGCAGAAGAATGAGTAATCAGAGGAGTGGGCCTGCCTGCTTCTTCCTGGGAATTTTCTTTCAGCACAGAGTA-TTGGGCTCCTGGCTGGCTGGACAGACGTCCTGTGTAGGGA-----------------------------------
24 Mus_caroli-NC_034573.1-160535_161125 80.9% 33.6% ---------------------------TCTACCCTTGATTGACTTGGATGTTAAACTTGAAAG---CCTGTGCGACCCCCACACTGAGGACCCCCACCCA-----------AAGCCTGCGGGGAAGGGAAAAGACAGTGT----GG-------------------------GGGC-----------CACCT-----ACTGGGTCAACTTGCAAGCACTCAGAAACTCTGTAGAGTGCCATGCCAC----------ACCTGGCCTGCGTGACTG--CACCACGCACAAATGCCTGCTCCTCCCCTCCTGTCCCTTCTTTCCTCCCAGCCTAAGGTGTCCTTTATGAGCTGGGGACAGCATGATCAAGGTGGTCA--AGGCTATGGGGGCACACTCTGCTAAGCCCTTGTGGGACCCAATGGCATAGGGTT----------------------------TGGAGATTACACCTTCC----TGGCCTCAACCCCT-------------------------------------ATCCTAGTGTGGCAGTA-------GGGTT----GGTTGACCTG-A------------------------------------------------GGGACACCAGGCTGGCCTTCAGGGTGCCCAT--------------------GGAGTCTTTACCCTGGATGGC------------------TCCTGGGCTTGGGATACCTGCTTTGTTG-AAGG---------------GGCAGGGGCTGGAAGCTGCCACATAGCCCTGAGGCCCCAGGGTCTAGGGGACTGGACACACACGGAGTTTCTGACTGCTTGAAGGAAGAGCCCTGGTCTTAGGAGGAGAGGGGTGATGGTGGAAGG---CCTCC----A---------------------AGCCCA----------------------------------------------------------TCTCCATCTTCTGGTGGCTCCAGGGGAGATGTGCAACGGCAGAGTCCTCACAGTCTCAGGATGCAGCTGAGGAAGAAGCAGATGGGTCGCAGTC-CTGGGTCTGGGCCTCCATCTGCACCGCTAATGAGCTGATGACGAAGGTTCCCTAGCTCCTGGCACCTTCCCTAGAGAGTCAGGAAGCCCTTGCCCAGCAAAGCACCCCC-----------------------------------------------CCTCTCAGAGCAGGTGTGGGTAGAGGGGCTT--------GTCCTGGGC----CAGGGTCTGTGGCTCCAA-CTCAAAGAGAAT----TGGCTGGGGGGGAGGG---CCTGGAGTAAGTAATGAGAG----GAATGAGCCTGTTTATTCCTGGGAGTGTGCTTCCAGCAGAGCA--TGTGGGCTCATGGCTGGCTGGACAGACTTCCCGT------------------------------------------
25 Rattus_rattus-NC_046154.1-159502_159878 79.0% 32.9% ------------------------------------GATTGACATGGATGTTAAGCTTGAAGG---GCTGTGTGACCCCCACATTGAGAACCTCCACCCC-----------AAGC----TGGGAAGGGAGGAAACAGTGT----GG-------------------------GGGC-----------CACCT-----AATAGGGCAGCTTGCAAGCACTGAGAAACTCTGCAGAGTGCCGTGCCGTGCCGTGCCACACCTGGCCTGTGTGGCTGCCCTCCGCACATGAATGCCTGTTCTTTCACTCCCGTCCCTTCTTTCCTCCCAGCCTAAGGTGCCCTTTATGAGCTGGGGACATCATGGTCAGTGTGGTAG---GGCTAAGGGGGCACCCTCTGCTGGGCCCCTGTGGGACCCAATGGCATAGCGTT----------------------------CAGA-TATCCACCTTCC----TGACCTCAATCCCT-------------------------------------ACCCTAGTGTGGTGGTG-------GGGTT----GGTTGTCCTG-A------------------------------------------------AGGAAACCGGGCTGGCCTGCAGGGTGCCCAT--------------------GGAGTCTTTACCCTGGATGGC------------------TTCTGGGCTTAGGATACCTGCTTTGTTA-AAGG---------------GCCAGGGGAGAGATGCTGCCTCATAGCCCTGAGGCCCCAGGGTCTAGGGGACTGGACACACATGTGGTTTTCAGCTGCCTGAAGGAAGAGCCCTGGTCTTAGGAGGAGGGGGGGGGGG-----GGG---GGAAC----A---------------------AGCCCA----------------------------------------------------------TCTCCGTCTTCTGGTGGCCCCAGGGGAGGTGTGCAACAGCAGAATCCTCGCAGTTTCAGGATGCAGCTGAAGAAGGAGCAGATGGGTCGCTGTC-CTGGGTCTGGGCCTCCATCTGCACCGCTAATGAGCTGATGAGGAAGGTTGCCCAGCTCCTGGCACCTTCCCTAGAGAGACAGAAAGCCCCTGCCCAGCAAAAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGGCAGGTGTGGGTACAGGGGCTT--------GTCCTAGGC----CAGGGTCTGTGGCTCCAT-CTCAAAGAGAGT----TGGCTGGGGGAGGGCTGGGAGAAGAGCAGGTAATGACAG----GAATGAGCGTGTGTATTCCTGGGTGTGTGCTTTCA--------------------------------------------------------------------------------------
clustal .. . . . .. . .. . . . ********* . * **** *** .*..** *:...* ..**. * .. . . .:.*
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