Reference sequence (1): Target
Identities normalised by aligned length.
Colored by: consensus/70%

                                                          cov    pid  1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .         .         .         .         :         .         .         .         .         6         .         .         .         .         :         .         .         .         .         7         .         .         .         .         :         .         .         .         .         8         .         .         .         .         :         .         .         .         .         9         .         .         .         .         :         .         .         .         .         0         .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .         .         .         .         :         .         .         .        ] 1589
 1 Target                                              100.0% 100.0%    --------------------------GGTGTGTGCGTGAGTTAGGG------GCTGGGTGCTT--------------GCAG---ACACTCTGGG--GAC-------TGCCCGGGG------------CTTGTGAAGGCCC-CAGTGGGGA-CACAGTCTGCCTGGGCTGTGGGGGCTGG----CAGGTGGCTGAGTCTGCATGTCTGCGCCCCTTCTCCC--TGCCTGCCTGGGGCCATC-----CCCAGCCACATTTTGGGCTCAGGGGCAGCTCTGGGGCCAGCAGGTCCCTCCA----CAGAGTTGAGGCTGTGCCAGGGCCCGG--------GCAGCAGGGTGGCTTAGGGTGCAGGCTCCAGAGTGGCCTCTGAGTGGG----AGGAGACAGATGCCC---CT-C------------------------------ACTGAAT------------C-C-------AGCA-----------------------------------------------------------------------CGAGTGTGCGTGGTTTCTGGGGCC--------------------------------------------------------------------TGAAGGTCCAACCAGACCTCCCTAAGGGAACCCCAGGCAGGCGGAAGCAGGGACAGTCTGCAGGGCTGGCT--CTGGAGAGGA-----ATGGCG---------------------AGG-----T-----AGCTGTTGCTGTC---AGGTTACCGGCCTG----------GCACTCCAGC---CCTATGTAGTGGAGGCCCAGTGGCCCTGGTCTTTGGTGGTCAAGACA---GCTGGAGACGGCCCCAGTTTCAGAGCGCTGGG-CCTCCCCGCCCATCTGT-ACTGCATCCTCTCTGGGC-CCTGCAGAGCCGAGAGAAGGAGCCTGC--------AGCCAG---GCTGG-AGGGGCTCTGAGAAGTGGCATCAGCTTCGCTGTAGAGAA---ATCTGGAGATG-GCTCCCATTGCCTGGCACGGCCTAATCAGAGAGA---ACTGCATGGTGGATAAACACTTGGCTTGAGGCTAATTTCATCAAACCTAAGATAAGGCTGGAAGTGGGCTGGACCCAGTGG----------GGCCTAATTGCCAGAG--TGCGCTGGGCGGGCACCGAGGCAGGCTCAGCCAAA----------------------------------------------------------------------GTGCACGTTCAACAGCAGTGGCTTCCC--------TTTGTGGAAAGAAAAGATGCCACGTGACT-------------GTGTCAGGGGT---GTTCTAGGGTGGGGCTCAGGCCCCGAGGGCCTCACTGTCCGAGCATTTTTGTTCCTGCTCA---GTGGTGAGTGGCTCACCCTG----GCACATAGCCAC---------------------------------------------------------------------------------------------------------     
 2 Piliocolobus_tephrosceles-NC_045434.1-206454_207132  97.9%  70.9%    ------------------CCAGCAAGAGTGTGCACGGCATGGCCGG------GCGCGGTGGCT--------------CAAG---CCTGT--------AA-------T-CCCAGCA------------CTTTGGGAGGCCG-AGACGGGCG-GATCATGA------GGTCAGGAGATCGA----GACCATCCTGGCTAACACGGTGA-AA--CCCTGTCTC--TACTAAAAAATACAAAAA-----ACTAGCC---GGGTGAGGTGGTGGGCGCCTATAGTCCCAGCTACTCGGGAGG----CTGAGGCAGGAGAATGGCGTAAACCTGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCGGCCACTGTACTCCAGCCTGGGCGACAGAGCGAGACTCCGCCTCA---AA-A------------------------------AAAAAAA------------A-A-------AAAA-----------------------------------------------------------------------AGAGTGTGCACGGCTTCTGGGGCC--------------------------------------------------------------------TGAAGGTCCAACCAGACCTCCCTAAGGGAACCCCAGGCAGGCGGAGGCAGGACCAGGCTGCAGGGCTGGCT--CTGGAGAGGA-----ATGGCA---------------------GGG-----C-----AACTGTTGCTGTC---ACGTCACAGGCCTG----------GCACTCCAGC---CCTATGCGGTGGAGGCCCAGTGGCCCTGGCCTTTGGTGGTCAAGCCA---GGTGGAGATGGCCCCAGTTTCAGAGTGCTGGG-CCTCCCTGCCCATCTAT-GCTGCATCCTCTGTGGGC-CCTGCAGGGCCGAGAGAAGGAGCCTGC--------AGCCAG---GCTGG-AGGGGCTCTGAGAAGTGGCATCAGCTTCACTGTAGAGAA---ATCTGGAAACA-GCTCCCATTGCCTGGCACGGCCTAATCAGAGAGA---CGTGCATGGTGGGTAAACACGTGGCTGGAGGCCAATTTCATCAAGCCTAAGATAAGGCTGGAAGTGGGCTGGACCCAGTGG----------GGCCTAATTGCCAAAGAGTGTGCTGGGTGGGCACCGAGGCAGGCTCGGCCGAG----------------------------------------------------------------------GTACATGTTCAACAGCGGTGGCTTCCC--------TTTGTGGAAAGAAGATACC--GCGTGACT-------------GTCAGGGGCGT---TCTAGGGTTGGGCTCAGGCCCCCTGAGGGCCTCACTGTCCGAGCATTTTTGTTCCTGCCCA---GTGGTGAGTGGCTCACCCTG----GCACACAGCCAC---------------------------------------------------------------------------------------------------------     
 3 Sapajus_apella-NW_022437067.1-182380_182778          93.3%  61.4%    --------------------------------TGCCTGAGTTAGGG------GCCAGATGCTC--------------GCAG---ACACTCTCTGGGGAC-------TGCTGGGGGCTCATAGGCCC-CTCCTGAAGGCC---CCAGTGGG-GACAGTCTGCCTGGGCCTTGGGGGCTGG----CAGGGACCTGAGTCTGCAACTCAGCACCCCCTTTCCC--TGCCTGCCTGGGCTGGGCC--ATCCCCAACAAAATTCGGGCTCAGGGGCAGCTCTGGGGCCAGCAGGCCCTTCCA----CAGGGTTGAGGCTGTGCCAGGGCCCGGGCCGCAGCCTGGC-------TTAGGGTTGTGGGTTCCAGAGTGGTCTCTGAGC----AGGAGGAGTCAGAGGCCC---CT-C------------------------------ACGGAAT------------C-C-------AACA-----------------------------------------------------------------------TGAGCGGGTGCGGCTTCTGGGCCC--------------------------------------------------------------------TAAAGGTCCAGCCTGACCTCCCCGAGGGAGCCCCAGGCAGTGGAGGGTGGTCCTGAGTGTGGGCCGGCAGGTGGAGGTGGGGG-----AGGGGTGC----TGGCAGGTGGAGGTGGGG-----G-----AGGGGGTGCTGGC---AGGCNNNNNNNNNNGGGA------GGGGTGCTGG---CAGGTGGAGGTGGGGG-AGGGGGTGCTGGCAGGCGGAGGTGAGGGAGG--GGTGCTGGCAGGTGGAGGTGGG-GGAGGGGGT-GCTGGCAGGCGGAGGGG-GAAGCCTGCAGGTCTGGC-TCTGGAGAGGAATGGTGGGGCAGCTGCGGCGCTCCGGTCACGGGCCTGGCGCCCCAGCCCTGTGCAGTGGCCCTGGTGTTTTGTGGTCA---AGCCAAACACG-GCTCGCATTGGCTGGTACGGCCTAATCAGAGAGC---CCTGAGTGGTGGGTAAAGACCTGGCTTGAGCTTCATTTCATCCAACCAAAGCTAAGGCTGGAAGTGGGCCGGACCCAGCGC--------GGGGCCTAATTGCCAAAGGGCACGCTGGGTGGGCACCGAGGCAGGCTCGGCCAAG----------------------------------------------------------------------GTGC-AGTTCAACAGCTGCGGCTTCCC--------TTTGTGGGAAGAAAAGATGCTGTGACT---------------GTATCTGGGGT-GTTCTGGGGTTGGGCTCAGGCCCACGAG-GGCTTCGCTGTCCGGGCAGTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------     
 4 Saimiri_boliviensis-NW_024100927.1-186275_186670     89.6%  54.1%    -------------------------------GTACCTGAGTTAGGG------GTCGGATGCTC--------------ACAG---ACACTCTCTGGGGAC-------TGCTGGGGGCTCATAGGCCC-CTCCTGAAGGCC---CCAGTGGG-GACAGTCTGCCTGGGTCTTGGGGGCTGG----CAGGGATCTGAGTCTGCACCTCAGCACCCCCTTTCCC--TGCCTGCCTGGGCCGGGCC--ATCCCCAACCAAATTTGGGCTCAGGCA--GCTCTGGGTCCAGCAGGCCCTTCCA----CAGGGTTGAGGCTGTGCCAGGGCCCGGGCCGCAGGCTGGC-------TTAGGGT-GCGGGCTCCAGAATGGTCTCTGAGC----AGGATGAGACAGAGGCCC---CT-C------------------------------ACTGAAT------------C-C-------AACG-----------------------------------------------------------------------TGAGTGGGTGCAGCTTCTGGGGCC--------------------------------------------------------------------TAAAGGTCCGGCCTGACCTCCCCGAGGGAGCCCCAGGCAGTGGAGGGGGATCCTGAGTGTGGGCTGGCAGGTGGAGGTGGGGG-----AGGGGTGC----TGGCAGGTGGAGGTGGGG-----G-----GGTGCT--------------------------------------------------------------------------GGCAGGTGGAGGTGGGGGAGG--GGTGCTGGCAGGTGGAGGTT-G-GGGAGGGGT-GCTGGCAGGCGGAGGGG-GAAGCCTGCAGGTCTGGC-TCTGGAGAG-GAAGGTGGGGCAGCTGCGGCTCTCCGGTCACGGGCCTGGCGCTCCAGCCCTGTGCAGTGGCCCTGGTGTTTGGTGGTCA---AGCCAAACACG-GCTTGCATTGCCTGGAACA--GTCT-----------------------AATCAGAGAGCGCTGCGCAGTTCATTTCATCCAACCGAAGCTAAGGCTGGAAGTGGGCTGGACCCAGCAT--------GGGGCCTAATTGCCAAAGGGCACGCTGGGTGGGCACCAAGGCAGGCTCGGCCAAG----------------------------------------------------------------------GTGC-GGTTCAACAGCTGCTGCTTCCC--------TGTGTGGGAAGAAAAGATGCTGTGTGACT-------------GTATCTGGGGT-GCGCTGGGGTTGGGCTCAGGCCCCCTGAGGGCCTCTCTATCCGGGCACTTTTGCCCCTGCTTA---GTGCAGAGTAGCTCATGCTG----TTGCACTAGCCTCTCTGCGGAGGGGCCTCATCTGCCCAGCTTAGCCACAGGC-----------------------------------------------------------------     
 5 Callithrix_jacchus-NC_048389.1-187413_187792         84.6%  52.6%    -----------------------TGGGGTGTGTGCCTGAGTTAGGG------GCCGGATGCTT--------------GCAG---ACACTCACTGGGGAC-------TGCTGCGGGCTCAGAGGCCC-CTCCTGAAGGCC---CCAGTGGG-GACAGTCTGCCTGGGCCTTGGGGGCTGG----CAGGGACCTGAGTCTGCACCTCAGCACCCCCTTTCCC--TGCCTGCCTGGGCTGGGCC--ATCCCCAACCAAATTCAGGCTCAGGGGCAGCTCTGGGGCCAGCAGGCCCTTCCA----CAGGGTTGAGGCTA------------------TGCCAGGC-------TTAGCGT-GCGGGCTCCAGAATGGTCTCTGAGC----AGGAGGAGACAGAGGCCC---CT-C------------------------------ACTGAAT------------C-C-------AACA-----------------------------------------------------------------------TGAGTGGGCACGGCTTCTGGGGCC--------------------------------------------------------------------TAAAGGTCTAGCCTGACCTCCCCAAGGGAGCCCCAGGCAGTGGAGGGCGATCCTCAGTGTGGGCTGGCAGGCAGAGGTGGGGG-----AGGGGGTG----CTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGGCAGAGGGG-GAAGCCTGCAGGTCTGGC-TCTGGAGAGGAATGGTGGGGCAGCTGTGGCTCTCCGGTCACAGGCCTGGCACTCCAGCCTCGTGCAGTGGCCCTGGTGTTTGGTGGTCA---AGCTAAACATG-GCTCGCATTGCCCGGCTGC--CTAATCAGAGGGC---CCTGCATGGTGGATAAAGACTTGGCTTGAGCTTCATTTCATCCAACCAAAGCTAAGGCTGGAAGTGGGCTGGACCCAGCGC--------GGGGCCTAATTGCCAAAGGGCACACTGGGTGGGCACCGAGGCAGGCTTGGCCAAG----------------------------------------------------------------------GTGT-GGTTCAACAGCTGCAGCTTCCC--------TTTGTGGGAAGAAAAGATGCTGTGTGACT-------------GTATCTGGGGT-GTTCTGGGGTTGGGCTCAGGCCCCGCAAGGGCCTCACTGTCCAGGCAGTTTTGCTCCTGCTCA---GTGGAGAGTAGCTCACGCTG----GTGCACAGCCT-CTCCATGGAGGGGCCCCATCTGCCCAGCTCAGCCACAGGCCTGGGGAGGGCCACCAGTCCAGGTTGTGTCCCACGGGGCCCCTTTGAGTTGCAGTGTGTCCCCTC     
 6 Aotus_nancymaae-NW_018508829.1-108192_108520         92.2%  47.5%    -------------------------GGCTGGGGGCCAGCCAGCCCTGCCTGAGCTGGAGGGAC--------------CCTG---GCGGTGCCTTCGAGC-------TGCACAAAG-----TGGCCA-GCTGCCAAGGAGG-GGCCGCCTG-GCCAGCCATCCCACAGCCTA-TGGCAGG----CGGGCAGGTGGGGGTCCCCTGGTGCCTCCTCTTTG-C--AGCTGGGTCGAGGTCTGCT--CTACCAGC----TCCAGGGAAAGTGGTCAGGGCAGGTGCCCAAATGAAGCTGCA------------GCCCCTTCCCAGGCCCCCAGC------CTCAC---------AGCCTTGAAGGGGGAACACTGGCCTGGTGGGGTGCAGTCTGACACGCTTGTTA---CT-T------------------------------TCCCCATGTGGCCCTCGCCC-A-------ACCA-----------------------------------------------------------------------CCCTGATGATAGGAGTTATGAAAA--------------------------------------------------------------------TGCAGCGTTCAGCTGAGCTGCCGCCTT---------------------------TATTGTCTGTAATTAGTTTCTGTTTCCGG-----AAAGCCTG----CTGGG--CTGGGGGAGAG-----G-----AACTCTGCCCGTCAGCAGGTCCTGGTTATGGGTG------GCGCTGGCTG---AGCCAGCAAATCAGGCCCAGGGGCCTTG--------------------------CTGCTTTGCTGAGTCTTGGAAAGAGGGT-TCTGTGGGTGAAAGCACCAGGCCCTGGGGTCCCTGA-CATGCACACATGCACACACACACACGGGCACACACACAGGAGTGCCTGGCGCTCCAGCCCCGTGCAGTGGCCCTGGTGTTTGGTGGTCA---AGCCAAACATG-GCTGGCATTGCCCAGCACGGCCTAATCAGAGAGC---CCTGCATGGTGGATAAAGGCTTGGCTTCAGCTTCATTTCCTCCAACCGAAGCTAAGGCTGGAAGTGGCT-GGACCCAGAGC--------GGGGCGTAATTGCCAAAGGGCACGCTGGGTGGGCACTGAGGCAGGCTCGGCCAGG----------------------------------------------------------------------GTGC-GGTTCAACAGCCGTGGCTTCCC--------TTTGTGGGAAGAAAAGTTGCTGCGTGACT-------------GTC--CGGGGT-GTTCTGGGGTTGGGCTCAGGCCCCCCGAGGGCCTCACCGTCCGGGCAGTTTTGCTCCTGCTCA---GTGGAGAGTGGCTCACGCTG----GTGCACAGCCT----------------------------------------------------------------------------------------------------------     
 7 Tupaia_chinensis-NW_006198262.1-185437_185827        69.9%  30.6%    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCTCTGGGGTCAATAGGCCCTTCCA----CAGAAATGAGACTGGGGACCACGCAGCAGACTCAC-------------TAACGATGTGAGGTCTTGAGCAGCTCTCAATGCAGG---AGAAAAGATGCCCCTCG--TGGGATTGCTGGGAGTGTGCACAGGTTCTA---GGGCCCA-AAGGACCCAGGT-GA-GCCT-TGGTTTGGAATGCTCTGGGCAGGGGTGGGCTGAGCCAGC-------A-AAGCCACCCTTTGGACTTCATGGCAGCTCAGGAAGCCCATGCTCACTTGCTTCTTTTGGAAGGATGCA-CAGGCTCCCCAAGTCCCTCT------GACCAGCCCCAGGTGTGGCTGGTTCCTGGCTCCATCTAGGTCACCTTGAGGAAGCCTTGGACAGTAGGGAGTGAGCCTGGGGCTGGCATGTAGGATCAAACTGCAGG-----------------GTGGGTCTGGAGAGGAA------GGACAGTAGAGAGCTGTTGTCCTGGGCCTTGGGCCTGA--------GAAACCTGAC---CCTGTACAGCTCAAACCCAGTAGACCTTGTCCATG---GGGTCAGCTG---TTAGAGACAGCCCCGGTCCCAGTGCACTTGG-CCTCCCCGCCCATTGCA-TGGCCACCCTCTGCAGGC-ATTAGGGAGCAGCGGGAAAAGAGATGTGGT-----CTCCAGCCAGGTTCACGTTTCTCTGATAATTAGCATCAATTTGGTTGTACAGAA---ATCTTGATATTGCTTCCATCGCAGGGGACTG-CCTGATTAGAAGAGAGATCAGTGTAGTGGATAAAGAG-TGGCTTGAACATAATTTCATTAAATCTAAGATAACACTGGAATGTGGGCTGGACCCGATG-CGGGGCCAA-CAGTACACTTGCCCCAGGGCCTCATTGCCCCAGTACACTT------------------------------------------------------------------------------------GCGCAGGCGCCAAAGCCA-----AC--------TCAGCAGAGGGCTCAGCTGGGGGGGGGGA----------------------------------------------------------------------GCTTTCAGGTGCTGCATT---TTCACTTGTA-----------------AAAAAGNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------------------NNNNNNNN---N-N     
 8 Delphinapterus_leucas-NW_022098043.1-176520_176752   72.2%  31.0%    ----------------------------------------------------------------------------------------------------------------------------------------GCC--CCAGCGGGGACAGAGCCGGCCTGGGCAGTGAGGGGCCG--GCAGATAGCTCAGGCCCGCAGAGCAGCCCCACCG-------TT-------------------CCCTGCCT---GCCCTGCTTCCAGGGGCAGCTCGGGGGTCAGCAGTGCCTTCCA----GAACGGTGAGGCTGTGTCAGG--------------------------------------GGCTCAGATTGGCCTCGGAGGCAGGACGAGAGACGAGTGCCCCCC-ACGGAATGGGTGCGAGTGGGCACAGGCCTCT---GGGGCCTGAAGGTCCACCAC-CAAGACCTGGCTTGAAAATGCCCCCGCTGGGAG------------------CTCCGGAGAGCCCACGCCCCCTGCCCCTCCTGTAAGGAGTCTGGGCCTCTCCCGCACCCCCTGGGCACAAAAGGGGCTCCCCACAAAGCCCTCTGACCAGCCCCAG------GACTAGTGGTGTCCGGGCGCTGTCCAGACCGCTTCAAGGAGGAC------------------------------------------------------------CTGCCAGTGGGGCCCTGGAGAA---------------AGGCCAGCAGGGGGCTGTGGGCCACAGCTGCT--------GACCCCAGAC---CCTGGGCAGCTCAGTGCCAAGTGGGCGCTGT---------------------------CCATGGTGGCCCCTGAGCACCTGGGCCTCCCTGCCCATCTGC-ACGGGGCCCTCTGTGGGC-GCTCGGGAG--CCCAGGGAAGGAGGGCTGA-----CCTCCAGCCGGGCAGAGTGGCTCTGATAATTAGTAACAATTTTATGGTCGAGAA---ATCTCAATATTGTTTCCACTGCCTGGAACTGCCCTAATCAAAGGAGAGATCTGTATGGTGGGTAACGAG-TGGCTTGAGCGTAATTTCATTAAGCCTAAAATAACCGTGGAACATAGGCCAGGCCGCACC-CTGGGCGGC-TCTGAGGCCTGGCCCAGCAGCACAGCTCCGGCCGGCGT--------------------------------------------------------------------------------------GAGCTTTTAGCCGCCACGGTTTCCC--------TTTGTGGAGAGGAGAGCGGCTGCATGACC-------------ACATAGA----------------------------------------------CAGGCATTTCTGGGGCCGAGGG---CTCAGAGCCGCC---------------TT--TCGGGCCCC---TGAGGGCCTCGTCGTCACAGAGCATTTTCAGCCACCGCCTCGGCATGCTGCCCA--------------------------------------------     
 9 Ceratotherium_simum-NW_004454172.1-183480_183756     74.6%  36.5%    ------------------------------------GAATGAGGGGA-GCTAGCAGGATGCTCT-------------CAGA---CTGCTGGCCGAGGAC--------TAGGGGAGCTCACAGGGCCCTTCCTGAAGGCC--C-TGGCAGGGCAGAGCCTGCCTGGGCAGTGGGGACCTG--GCAGACGGCTCAGGCCTGCAGATCAGCCCAAGGT---------GT-----------------CCCTGCCT---GCCCCATCTCCAGGGGCAGCTCTGGGGTCAGCAGGCCCTTCCA----GAATGGTGAGGCAGTGCCAGGGGCCGGGAAATAGTCTG--------GTTTAGGACGCAGGGTCCAGATTGGCCTCTGAGGCAGGAAGAGAGAGGAGCGCCCCTCATGGAAGGGGGTGGGAGTGCCTGCAGGCTCCT---GGGTCCTGAAGGTCCAAAGT-CC------TGCTTTAACATGCTTCCCGCTG---------------GGAGCT-CTGGGAAGCCCACACCCACCTGCTCCTCCTGGAAGGACTTTGGGCCTCTCATGCGCCCTCCGGGCACATGAGGGGCTCCCTGAGGAGCCCTGTGTCCAGGCCCAGGCCCAGGCCTGGCCATGTCCGGGCTCCGACCAGATCACCTTGAGGAAGCCCGGGGCAGTGGGGAGAGATCCTGCAGCCTGAGGCT------GACGGGTGGG---G-CAGGCTCCGGG-CTGGATCTGGAGAGAAG--------------TGAGCAGGGGGCTGTTGGCCGGGAGCCGCG--------GACCCCAGAC---CCTGGGCAGCTCAGACCCAAGCGGCCGCTGTCCACAGTGGTTGGGCCG---TCAGAGACAGCTCTGGGCCTGAGCTCCTGGGCC-TCCCTGCCCATCTGC-ACAGCGCCCTATGCTG----GCACTCCG--GAGCCCAGGGCGGGGCTGA-----CCTCCAGCCAGGCAGAGCAGCTCTGATAATTAGCATCAATTTGGCTGTGGAGAA---ATCTCAATATTGTTTCCACCACCTGCAATTG-TCTAATCAAGAGAGAGATCTGTGTGGCAGGTAAAGAG-TGGTTTGAACATAATTTCATTAAGTCTAAGATGACAGTAGAATGTAGGCCAGGCCCAGTG-TGGCCCTCA-GGCTTCATTGCCTAGTAA------------GCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
10 Galeopterus_variegatus-NW_007727608.1-240977_241189  76.8%  28.5%    --------TGCCCCCTGGAGCACGTGGATC--TGCACAAGT------------GAGGGTGGTGA-------------GCAG---GTGCTTGCTGAGGAC--------TGG---GGGCCATGGAGTCCCGCCAGAAGGCC--CCGGTGGGGACGAAGCTCGTTGGCTCACACCTGCTCACCAGCACCCGCTTTTGCTGCCTGCCTGGGGCTGAGCC-------ATGT-----------------CCACCAC---CACCCCAGCCTCTGGGGCAGCTCTGCGGTCGGTGGGCCCTTCCA----CAGCGGTGGGGCTGTGCCAGGACCTGGGCAACAGGGTG--------AGGTAGGATGTGGGGTCCCAAGCAGCCCTTGGAGGTGG---GGGCACAAATGCGCCTCACTGGATCGG---GCACGAGGTACAGGCTCCT---GGGGCATGAAGGTCCCAACT-CCAAGTCCTGGCTGGAAATGCTCCGTGGTAGGAGCTCCAGGAAA--------------CCCTTTTGTGAAGATGCACCTTTTGTGAGGACGCTGGGCCTGTGGGCACA--------------CAGCAGGCACCCGTGGTCCCTCTG-----------------------------GCCATGTCCAGCCAGATTGCCTAGGGGAAGCCCTGGGCAGCGAGAGAGACCCTGAGCCTGGGG--------CTGGCAGGTGTT---GCTAAGTCCCAGGCCTGGCTCTGGAGAGGG-------------TGGGGGACTGTTGCCCTGAATCCATGGCCTCA--------GACCCCAGAC---CCTGTGTGGCACAGACCTGGTGGCCTTTCTTCACAGTGGTCAGGCCAG---CCCGAGATGGCCCTGGTCCCAAAGCACCCAG-CCTCCCTGCCCATCTCT-GCAGGGCTCTGGAGCTGA---------------AGGAAGGAAAATGTGA-----CCTCAAGCCACTGTGGGGAGCTGC--TGGC-----TCCAGTGTGGGGAGCTGCT---GGCTCCAGTGTGGGGTGACTCCGTGGGGCTC---------------------------------AGTTG-TAGGGTG------A---CCTTGTATGGCACACAGTAGGGCAGGGATGGGTCGGATGAGCA-GGAGCCCAGTGAGATGTCCTGTTGCTCACAGAAATGACGGGGACAGAG-----------------GTGGAC---------------------------------------------------------------GAGGGTGGATGGGCTTGGGCTTCGG--------ACTGATGAGG-----------------------------------------------------------------------------------------CGTGGGTGGGCCTGCATG---ACCCC----------------------------------------------------------------------------------------------------------------------------------------     
11 Marmota_flaviventris-NW_023144724.1-172372_172555    78.6%  34.3%    -------------------GGCAGCAGATCTGGCCC---ACGTCTGT-GATGGGCTGGTGCTGT-------------CCGA---CTGCCCACCGAGGAC--------TG---------------------CAG--AGGC--CCCTTGGGGACAGAGACTGCCTGGGCAGTGGGACTGGC----GCATGGCTCACGTCTGGTGTCAGCAACCCCCTCCCCC--TGACTGCTTGGGGACGGCCCAGCCCCGCCACTTCCGGGCCTCTGGGGGCAGCTCTGGGGGCAGCAGTCCCTTCCT----CCAGGTGAGGCTCCTGGGACC-----------------------------AGGCAGCAGAACCCCGGGGAGCCTCACAGGTAGGAGGAGGAGGAGGAGG------------------AGGGTCGGCCCTTGTTGGATGGGCCTGCTGAAGGTGCGGCTC-AAGGTCGCGGTTTGA-CCTGT------GGCGGACCT------------------CTTGCAGCCCGTGCTTGCCCACCCTGTCACGAGCACCCTGGGCCTCTGGGCACTCG---------------TGGGCTCTCAGGGTCCCTCTG------TGCAGTTCCAGGCCTGGCTGTGCCCTGGCACCA-CCAGGTTGTCTGGAGGAAGCCCTGGGCTGGCAGTTGGGG---------------------TGGGTAGCAGGG---GTCAGGCTCC----AGGGCTCTGGAGAGGAG---------------AAG---------------GTGGCACCTCA--------CACCCCAGAA---CCCACGCACTTCAGACCCAGTGGCCCTTGTCCA-TGGAGGTCAGCCAG---CCGGAGATGGCCCCAGTGCCTGAGCACCTGCTC-TCCCGGCCCACCCGT-GCCGCAGACCTCTGCTGG--TGCTGGAG--CCGCAGGAAGGGAGCGTGC-----TTCCAGCCAGGCTCAGGCCACTCTGATAATTAGCATCAATTTGTTTGTAAGAAAAAAATCTTGATATTATTTCCAGCTGCCTGGAACTGCCCAGTCAGAGTGGAGATTGATT---------------CGACTCCAACATCATCTCATTAAACCCAAGAACGCTGG--AATGTGGGGTGACCGGCGCC-CACCCTGTG--CCCGGCCGCCCAGAGCA--CCCTTGGGCTGCAGAGACCTGGCTCGGCAGAGGGCTGG------------------------------------------------------------------GGGAGTGCATCAGCC--------CT--------GTGGCTGGCAGCAGCACTGCCCAGGGTGG----------------------------------------------------------------------CCATGTTGC---------------------------------------------------------------------------------------------------------------------------------------------------------     
12 Castor_canadensis-NW_017871110.1-170245_170486       90.8%  40.4%    -------------CAGATCCTTCCTCAGGGTGAGACTGCAACAGGG------ACCAGGTG-------------------------------------------------ACACAGGACATAGGAAC-CTTGTTGGATCTG-GTATGTGTGTGCAAGTGTGAGC---------AGAAGGT----CCCAGCTTGAGGTCTTGGCGTGAAGATTCTCTATGGTGGTTGTTCTTGGAGCCATGCT--CTCCCACCTTGTTGTAAGGATGCTTGGCCTCTGGGCATTCAATTGGCTATTAGGGTCTCTCAGGCCTGGCTGTGTCCTGGATTCA------------------------CCAGATGGCCTGGAGGAAGCCCTAGGCA---GAGGGAAGACACCCAGATCT---GGGG------------------------------CTAGCAGGTGGGTCTCCTGA-C-------TGCG-----------------------------------------------------------------------TCAGG------AGCATCTCTG-------------------------------------------------------------------------AGGATGGGGTCAGGCCTCCTGCGAGCCTCAGCATCAAAAGCACAAAGCACTTCACTGGCTGCTCCAGGG--CTGGCTCTGG-----AGAGCAGC----AAGATGGCAGGGGATAGA-----G-----GAGTGTGC-TTTG---GAGTCATGGGCC---TTG------GACCTCAGGC---CCCATACTGCTTAGGCCCAGTGTTCCTGACCCATGGTGATTGGCCATC--CGGAGATGGCCCTGA--------GATGTCCGG-TCTACCTGCCCATCTGT-ACAGCAGCCGCTGCAGGC-ACTCCAAGCGAAGGAAA-GGAGACACGGCCT--CCAGCCAG---GCTCA-GGTCGCTGTGATAATTAGCAGTGATTTGGTTGTAGAGAA---ATCTCGATATTGCTTCCGGCTGCCTGGAACTGCCTAATTGGGGCAG---AGATCTGTGTAGTGGATACAGTGGTTTCAACATAATTTCATTACATCTAAGATAACACTGGAATGTGGGCTGCCCAGCACACTCGTCCTCGTGCCTAATTGCCCAGAAGCACCCATGGGCTGGCTGAGGCCTGGCTGAGCAGAG----------------------------------------------------------------------GG----CTTGGTGACAGGTGCCATCAG--------CTGCAAGGGTTTCCAGCTGCTGTGTGACT-------------GTGTCAGGAGGATCTCTGAGGCTGGAGTCAGGCCTCCTGAGAGCCTCTGCTTCACAGAACTTCATTGGCTGCTGA---GGGGCAGGGGCTCCACTC---------------------------------------------------------------------------------------------------------------------------     
13 Odobenus_rosmarus-NW_004450599.1-186929_187104       72.4%  33.0%    -----------------------AGGGGTCTGTGCGAGGATGAAGGG-GCGAGTGGGATGCCCT-------------TGGG---CTGCTGGCCAAGGAC--------TG-GGGGGCTCACAGGGCCCCTGCTGGAGGCC--CCCAAGGGGACAGAGCCTGCCTGGGCAGTGAGGAA--C--GCAGATGGCTCAGGCCTGCAGATCAGCCCCCCAC-------CTGT-----------------ACCCTGCC---GACCCTACCTCCGGGGACAGCTCTGGGGCAAGAGGTTCTTCCA----GAATGGTGAAGCT--GTCAGGGGCCAGGCCACAGGCTG--------GCTTAGAACTCGGGGTCCAGCCTGGCCTCTGAGGTGGGAAGAGAGGAGCATGCCCTCA-GAGAATGGGGCACGAGTGCACGCAGGCTCCC---AGGGCCTGATGGTCCAGTGC-AAAGTCCTGGCTTGGAGATGCACCCGTGCTGGGTGCATCTCCCATGCTGGGAGCCCTGGGGAGCCCATGCCCACCTGCTCCTGTAGGGACACTGGGCCTCTCATGCAGTCTTCGGGCACAGGGGCTCCCC---ACAGAGCCCTGCG------ACCCGCCCCTGGCTTGGCTGAGTCCCGGCTCTGACCAGATCCTCTTGAGGCAGCCCAGAGCAGTGGGGAGACCGTGCAGCCTGGTG--------CCTGCAGG-GGG---T-G-GGCTCTGGG-CTGGCTCTGGAGGGAAGTGA--GCAGCAGGGGTGGGGGGTCGATGCTGGCCTAGAGCTGTG--------GACCCCAGA-------------------CCCAAGCAGCCATGTCCACGGTA----------------------------GACCCCGAGTGCCTGGGCCTCCCCGGCCATCTTC-ATGTCCCACCCTCCCAGC-GCTCTGAAG--CCCAGGGAAGGAAGGCTGA-----CTCCCTGCCAGGCAGAGCAGCTCTGATCATTAGGATCAATTTTGTTGCCGAGAA---ATCTCAAGATTGTTTCCAGCACCTGGAAGTG-CCTGATCGAAGGCGAGATCTGTGGGGGTA---AAGAG-TGCCTTGAACATAGTTTCATGAAGTCTGAGATAACAGCGGAGTGCAGGCTAGGCCCAGCG-TGGCCCTCG-GACACCCAGCAGAGTGGC------------TCCAGCCT--------------------------------------------------------------------------------------GAGGGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
14 Lemur_catta-NC_059130.1-174044_174329                75.1%  31.9%    ----------------------------------------GTGCCTG-GCTGGAGCC------------AGGGCAGCACTGGGCGTGTGCGGAGTGAGGGGAGGGG-ACTCTCGGGGTCTCCCAGGCCCTTTGAAGGCC--CCGGTGGGGGCAGGGTCTACTGGGCAGTGGGGGCTGGC----GGGTGGCTGGCACCTGCACATCAGCACCCCTG---------CCTGCCCGGG-----CTGAGCCGTCCCCCCTTCCTGACCCTGGGGGCAGCTCTGGGGGCAGCAGGCCTTCGCC----------------------------CAGGCAACAGGCTG--------ACTTGGGGTGCGGCGTGGAGAGCGGCCTTGGAGC-GGGAGGAGGGACAAACGCCCGTCCTTGACCTGGACGCAG--GTGCGCGGGCTCCT---GGGGCCTGAGGGTCCCGGCTCCAAGTCTGTGCTTGGAAACGCTCTGTGCCCGTAGCTC----------------TGGGAAGGCCACACTCACCTGCACCTTTT-GCAGGACTGTGGGGCTCTGGGCACGCAC----------------------TTCCACCCCCTGGCCCCACGCCTGTCCCAGGCCTGGCCCTGTCATCGTTCCAACCAGCTCTCCTTGAGGAAGCTCAGGACAGGTGGGGCGGGGACAGAG------------------------------------------------------------------------------------GGCGTTGTCATGGAGCCATG-GGCCTC-GGCCCCCAGC---CCTGGGCAGCCCAGACCTGGTGGCCCTCGTCCACCGTGGGCAGCC-----CAGCTGCAGACGCCTGGTCTGGGAGCGCCGGG-------CCCCCACCCGT-GCAGCCACCCTCTGCAGGTGCTCGGGGCCGAGG--GAGG--GAGGCGTG-----ACCTGCAGGGGTTCGAGAGGCTCTAACTGTGTAGTGAG-------------------ATCTCGCTG----------TTGCCCTGAATCGCCTGGTCGGAGGGGAGATCTGTGTGGTGGGCAAAGAGGTGGCTCGGACACAGTTTCACTGACTCTGACAGGACATTGCAAACGTGGGCTGGGCCCCACGTGGGCCTAG-TTGTCCGAGAGGACA-------CGTGGGCCACCGAGGCCTGGCCCAGCAGCAGGGACTCTG--------------------------------------------------------CCGCGGTGTTCCCGCAGCCGTGCGG-TTTCCA--------CTG---GTGGGAGGAGCCGCCGAGGGACC-------------TCGTTG-----------------------------------------------GGGGCGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------     
15 Pteropus_alecto-NW_006429611.1-194108_194343         78.0%  31.3%    ---------------------------------------AGCAAGGG-GAGCTAACCAGCTCCA-------------CGCA---GGGGTGTGTGCGTGA--------GTGGGGGGCTCGCGGGGCCCCTCCTGAAGGCCCCCCAGTGGGGACAGAGCCTGCCTGGTCAGTGTGGAGCTG--ACAGATGGCTCAGACCTGCAGATCGGCACCCCCT-------GCGC------------CCCGTCTCCCCTGCCTTCCCCACCTCCAAGGGCATCTCTGGGGTCAGCAGGCCCTTCCA----GAATGGCAAGGCTGCCCCGAGGGCCTGGCCACAGGCTG--------GCCAACGCAATGGGGTCCA----GGCCTCTGAGGTGGGAGGAGAGGAGGGCCCC---------------------------------TCA---TGGAGTACAGGGTCCAGCAC-TAAGTCCTGGTTTGAAGATGCCCCGTGTTGTGGCTCT------------------GAGAAGCGTACCCTGCTTGCCCCTCCCGTAGGCACGCGGGGCCTCTCAGGCACCAGGACTGCCCAGGCCCGGCTG------------------------------------TGTCG-----------GCCTCCAGTGATCACCCAGGAAGCCCCGGGCGGTGGGCAGGCAGGCTGGGCTCCGGGCTGATTCCGGAGAGGAGTGAGTGGGAGGCTGTTGGCCATCGTCCCCAGTGGTTAGGACGGTGGAGACGACCCCGATTCCTGAGCGCCTGGGCCGCCCTGCCCTCCGCTCGGCCACCCTCTGTGGATGCTCAGAGCCAGGCAGGGGCTGACC--------TCGGCTG---GCAGACAGGCCGGGGGTCCGCGTCAGCTTGG-CCGCGCGACATCTCAGT-GTTGTTTCTGC---------CCCTGGAG---------CTGCCTGGCTGA-----CCTCA-G-CTGGCAGACAGGCCGGGGG---TCCGCGTCAGCTTGGCCGCGCAAT---ATCTCAGTGTTGTTTCTGC-CCCTGG-AGCTGCCCGATCAGAGGAGGGATCTGTGTGGTGGGTGAAGAG-TGAAC-----GTAGTGTCAGTAAGTCCAAGAGGACAGCGGGCTGTGGGCCCTGGGCCTCG-CTGCCTGACGAGCCCCCAGGGCTGGCTC---------CCGGCCGGCCT--------------------------------------------------------------------------------------GTGCTTCCGGCTGCTGCC-----AG--------TCCCTGGTGTGAAGGGCAGCAGCCCGCCC-------------ACACGGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
16 Microcebus_murinus-NC_033661.1-172656_172822         74.1%  28.9%    ------TCTCGCTCTTGCTCAGGCTGGTTTTGA------ACTCCTGA-CCTCGAGCAATCCTCCCGCCTCGGCCTCCCAGAGTGCTAGGATTACAGGCGTGAGCCACCGGGGCGGGCCTCGCAGGCCCTCTTAAAGGCC--CCGGTGGGGACAGGGTCTGCTGGGCAGTGGGGGCTGAG----CCATGCCCCCTTCCTGACCCTGGGGCAGC---------------------------------------TCTGGGGGCAGAGGCCCTTCCACAGAGGTGCGGCTGGGCCCTGGCC----------------------------CAGGCAACAGGCTG--------ACGTGGGATGCGGCGTGGAGAACGGCCTTAGAGC----AGGAGGGACAAACGCCCGTCCTCGAATTGGACGCAG--GGGCACAGGCTCCT---GGGGCCTGAAGGTCCCGGCTCCAGGTA---------------TCCGTGCCGGTAGCTC----------------TGGGAAGGCCACCTGCACCTGCACCTTTT-GCAGGACTGTGGGCCTCTGGGCACACAC----------------------TTCCACCCCCGGGCCCCACGCCTGCCCCAGGCCTGGCCCTGTCATCCTTCCAACCGGCTCTCTTGAGGA--AGCCCAGACAGGTAGGGCCAGGGCAGAG------------------------------------------------------------------------------------GGCGTTGCCCTGGAGACACA-GGCCTC-GGACCCCAGC---CCTGGGTGGCTCAGACCCAGTGGCCCTTGTCCACAGTGGTCAGGC-----CGGCTGTGGACACCTGGTTTGGGAGCGCCTGG-CCTCCCTGCCCACTTTT-GCAGCCACCCTCCGTAGGTGCTCTGGGGCCAAGGG-GGGAAGATGTGAC-----CTGCAGCCGGGCTCAAGGGGCTCTAACAGTGCAGTGGG-------------------ATCTCGGTG----------TTGCCCCGAATCACCTAATCAGAGGGGAGCTCTGTGTAGTGAACAAAGAGGCGGCCTGGACATAGTGTCACTGAATCTAACAGAACTTTGCAGATGTGGGCTGGCCCCAACGTGGGCCTAA-GTGCCCAAGAGTGCA-------CGTGGGCCTCCAGGGCCTGGCCCAGCAGCAGGGGCGAGG--------------------------------------------------------CCCAGGGGTTCCTGCAGTTGTGTGG-TTTCCA--------TGG---TG-GGAGGAGCAGCCGTGTGACC-------------ACGCAG-----------------------------------------------GGGG------------------------------------------------------------------------------------------------------------------------------------------------------------------     
17 Manis_javanica-NW_023436200.1-176109_176273          71.1%  29.6%    GGGAGCTGGCCAGCTCAGAGCCCATGGGTCTGTACATGAATGAGGGG-CTGAGCAGGATGCTGT-------------GGGT---GTGCCGGCTGAGGAC------------------------------GGGGACACTC--ACAGGGGGGACAGGGCCTGCCCGGGCAGTGAGGAGCTG--GGGATCTGCTCGGGTCTGCAGATCAGCCCCCTGC-------AGGT-----------------TCCCCGCC---TGCCCCACTCCAGGGGCAGCTCTGGGGTCAGCAGGCCCCTCCA----GAACTGCGAGGCTGTGACAGGGGGCCCAGGTGGCAGTC------TGGCTTAGGATGTGGGGGTCTGCTTGGCCTCTGAGGCAGGAGGAGAGACAAATACCTCACACAGTTTG--------------CAAGGCTCCT---GGGGCCTGAGGGTCCAGTGG-GAAGTCCTGGCTTGAAAATGCCCCATGCTGGGAGCTC-----------------GAGAAGCCCGGGCCTGCCTGCCCCTCCTGTAAGGCCACTGGGCCTCACATACCCTCCAGGCACACGAGGGGGAAGAACCCCTGACCG-------------------GTCCTGGCCCTGACCCTGGTCTCCAACTAGATCACCTCAAGGAAGCCCTGGACGGAGCGGAGACACCCTGCAGGTGGGCCCG-------------------------CTCTGTG-CCGGCTCCGGAGAATAGC-----C-----AGAAGGTCCAGGGGTGTGGGCCTGGAGCTGAC--------ACCAC--------ACCAGGCAGTTCAGACCCTGGCAGCCATGTCCCT----------------------------------------GTGCCCGGGCCTCCCTGCCTGTCTGC-ACG------------------------------------------------------------------------------------------------------------------------------------------------------GCCGCCCAGGGAAGGAGGGCTCAAGAG-TGGCTTGAACATAATTTTATGAAGTCTGAGAGAGCAGTGGAATGTAGGCTAGGCCCGGTG-TGGCCACAG-ACCCCATTGCATAGTAAGCACCCTGGCCGGCTCTGAGGCTGGCTCAGCAGGGCAGCTCGGG---------------------------------------------------------CAGCGTGTGCCCTCGGCCGCCGAGGCTTCCA--------TTCATGGAAAGAAAAGCAGCTCCACGGCC-------------ACATGGG----------------------------------------------GAGGTGTTTCTGGTTTTGAGGG---TTCAGATCTGTC---------------CTTTGGGTCTCC----CGGGAGCATTAGTGTCATAAACCTTTTCATTTCCTGCTGAGGGC------------------------------------------------------     
18 Capra_hircus-NC_030823.1-175434_175605               78.7%  31.3%    ----------------------------------GGAGGGGGGCATG-GTGAGCTGGATGAT-C-------------TCAG---ATGCTGGCTGAGGAC--------TG-GGGATCTCACATGGCCCATCCTGAAGGCC--C-AGTGGGGACAGAGCCTGCCTGGGCAGTGAGGAACTG--GCAGGTGGCTCAGGCTTGCAGAGCCGTACTCCCA-------TCCC-----------------ATTCTCTGCCTGCTCTGCCTCTGGGAGCAGCTCGGGGATCAGCAGTCCCTTCCA-----GAACATGAGGCTGTGCCAGGGGCCAGGCA-------------------------ACAGGGCTCAGATCGGCCTCGGAGACAGGACGAAAGATGAGTGCACCTCATGGAGTGGGC-----------ACAGGCTTCT---GGCACCT-------TAAGGT-CACGTCCTGGCTTGAAAACGCCCCTGCTGGGAGC------------------CCC-----------------------------AGGGAG---CCCACACCCCTGGCCCCTCTGGGCGCAAGAGGGTCGC-ACGCAGAGCTCCCTG------AGCAGCCCCAGGCCAGGTGGTGTCTGGGCACTGTCTAGACCATTTCGAGAAGGACCTGGAGA-------------------------------------------------------------TGGACCAGCAAGAAAAAAGG--ACTGGCGAGGATCTTGAGAGAGTTGTCACCAGGAATGCT--------GACCTCAGAC---CCTGGGCAGCTCTGCCCCCAGTGGCTGTTGT---------------------------CCCCGGTGTCCCCTGAGCACCTGGGCCTCCTGGCCCATCTGT-GTGGGGCTCTACATGGGC-ACTCAGGGA--CCCAGGGAAAGAGGGCTGA-----CCTCCAGCCAGGCAGAGCCACTCTGATAATTAACATCAATTTTATTG-CGAGAA---AGCTCAATATTGTTTCTGTTGCCTGGAACTGCCCTAATCAAAGGATAGATCTGTGTGGTGGGTAAAGAG-AGGTCTGAGCATAATTTCGTTAAGTCTAAAATAACAGTGGAATGTGGGTGAGGCTGGTGT-GGCCCCTGG-GCCTCCTGCATGATGAGCACCCTGGGTGGCTCAGGCCT--------------------------------------------------------------------------------------GGCTCAGCAGCGTGG----CTCCGG--------CCAGTGTGTGCTTTCAGTCACGGTGGTTT-------------CCTTTCG----------------------------------------------TGGAGAGGAGAGTGGCTGTGGG---ACCACGTTGG--------------------AAGCAATTCC---TTAGGCCG------------------------------------------------------------------------------------------     
19 Desmodus_rotundus-NW_020090861.1-189883_189997       76.9%  29.7%    ----------------------CTCAGTGTCCGTGTGGGATGGGAGG-GTGAGCAGGAGGCTCT-------------CAGA---CTGCTGGCTGAGGCC--------AA--GGGGCTCACGGGGCCCCTCCTGAAGGCC--CCGGAGGGGACA-GAGCCAGTGGGGCAGTGAGGAGCTG--GTGGACGACTCAGGCCTGCAGGTCAGCCCCACTG-------TG-------------------CCCCACCT---GTCCCACCTCCAGCGGCAGCTCTGGGGTCAGCAGGCCCTTCCA----GGGCGGTGAGGCCATGCCAGGGGCCAGCGGTGGTCAGG------CTGGCTCAGGATTGGGGTCCAGATTGGCCACTGAGGTGGGAGGAAGCC----------------------------------CCCATGGAGT---GGGACCCGAAGGTCCAGCAT-GAAGTCCTGGCTTAAAGAAGCCCCTCGTTGGGTG-----------------CTCTTGGAAACCCACCCCACCCTCCCCTCCTGCAAGGGCGCTGGGCCTCTCATGCACCCTCTGGCACAGGGCAGGGCTCCCCATGGAGCCCTCTGG------CTCACCCCAGGCCTGGTTGTATCCAGGCTTCAACCCCATCACCCCGAGGAAGCCCGGGAGAGTGGGGGGAGCCCCTGCAGCCTGGGTTAGGCAGCAGG----------G-TGGGCTCTAGG-CTGACTCTGGAGAGA--------------AGTAAGCAGGGGGCTGTTGGCCTGGAGCTACA--------GACCCCAGGC---CTGGGGCTGCTCAGACAGCCGGGTCCCATGC---------------------------------------------AGCCGGGCCTCCCTGCCCATCGGC-ATGGCCGCCCTCTGCTGA-CGCTCAGAG--CCCAGGGTGGCAGGCCGGC-----C-------------------------TCCT-TGGTCAGCCTTGGCTGCAGA------GGAACATCAGCGTGTCCGCCCCCGGA-AATTGCTTGACTAGGAGGGAGATCTGTGTGCTGGGTGAGGAG-GGTCTCAAGTGCACCGTCATTAAGTCTGCGATGACAGTGTGCTGTGGGCGAGGTCCCCCG-TGGCCCTCG-GGCCTCACGGCGTGGTGAGCGCTCTGCGCCGACTCCCA--------------------------------------------------------------------------------------GCGCGTCTGTGCGCA--------GG--------ACCGTTTGTGGGAAAGCGGCCGGCTGAGC-------------ACATGGG----------------------------------------------GCGGCGTTTCTGGGGCTGGGG-------------------------------------------------------------------------------------------------------------------------------------------------     
20 Equus_asinus-NC_052181.1-184988_185162               79.0%  34.8%    -------------------------GGGTCTGTGTGTGAATGAGGGG-GCCAGCAGGATGCTCC-------------CAGA---CTGCTGGCTGAGGAC--------TGG-GGGCCTCACAGGGCCCCTCCTGCAGGCC--C-CGGCGGGGCTGGGCCTGCCTGGGCAGCGAGGAGCTG--GCAGACAGCTCAGGCCTGCGGATCAGCCCCCAAC-------CTGC-----------------TCCCTGCC---TGCCCGCCTCCAGGGGCAGCTCTGGGGTCATCTGGCCCTTCTG----GAATGGTGAGCCTGTGCCAGGGGCCAGGCAATAGTCTG--------GTTTAGGGCATGGGGTCCAGATTGGTCTCCGAGGCAGGAGGAGAGATGAGCGCCCCTCATAGAATGGGGTGGGAGTGCCCGCAGGCTCCT---GGGGCAGAAGGTC-CCAACT-CC------TGCTTGAACAGGCTTCTTGCCA---------------GGACCTTGGGGGAAGTCCATGCCCACCTGCCCCTCCTGTAAGGATGATGGGCCTCTCCCACA---------------AGGGGCCCCCTGACGAGCCCTGTGA---------------------------------CCAGCCCCAGATTACCTCAAGGAAGCCTTGGGCAGTGGGGAGAGACCCTGCAGCCTGAGGCC--------AAGGTGGG---G-CAGGCTCCAGG-CTGGCTCTGGAGAGAAG--------------TGAGCAGGGGGCTGTTGGCCTGGAGCTGTG--------GACCCCAGAC---CCTGGGGAGCTCAGACCCAAGCAGCCACTGTCCACGGTGTTTGGGCCA---GCAGAGACGGCTCTGGGCCTTGAGCTCCTGGGCCTCCCTGCC----------------------------CTGCACAG--CTGCCCAGGGGAGGGCCGA-----CCTCCAACCAGGCAGAGGAGCCCTGATAATTAGCATCAATTTGGTTGTGGAGAA---ATCTCAATATTATTTCCACCACCTGGAATTG-TCTAATCAAGAGAGAGATATGTGTAGTGGGTAAAGAG-TGGTTTGAACATAATTTCATTAAGTCTAAGATGACAGTGGAATGTAGGCCAGTCCCAGCG-TGGCCCTTG-GGCCTCATCGCCTAATAA------------GCACCCTG--------------------------------------------------------------------------------------GGCCAATGCAGAGGC-C------TG--------GCTCAGCAGA---GGGGTCCAGCGGGCGT-------------GTGTTCA----------------------------------------------GCGGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------     
21 Puma_concolor-NW_020338243.1-185039_185289           69.6%  29.9%    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCTGCC---TACCCTACCTCCAGGGACAGCTCTGGGCCGAGAGGCCCTTCCA----GAATGGTGAGGCT--GTCAGGGGCCAGGCAATAGGCTG--------GCTTAGAACGTGGGGTCCAGCTTGGCCGGTGAGGTGGGAGGAGAGGAGTGTACCCTCA-CAGAATGGGGTGAGCGTGCACAGACAGGTC------------------CAGTGC-AAAGTCCTGGCTTGACGATGCGCCACGCTGGGAGCTC----------------TGGGGAGCCCATGCCCACCTGCCCCTCTTCTAGGGACACTGGGCCTCTCACGTGCTCTCTGGGCACAGGGGCTCCCC---ACAGAGCCCTCTG------ACCAGCCCTCGGCCTGGCTGTGTCTGGGCTCCAACCAGATCCCCTCGAGGAATCCCAGAGCAGTGGGGACAGACCCTGCGGCCTGTCTGTGGGGCCTGCAGGTGGG---G-CGGACTCCGGGCTGGTTCTGGAGGGGGAGTGA--GCAACAGGGATGGGGCACTGATGTTGGCCTAGAGCTGGG--------GACCCCAGGC---CCTGGGTAGCTCAGACCCCAGCAGCCTTGTCCACGGTA----------------------------GTCCCTGAGTGCCTGGGCCTCCCTGGCCATCTTT-GCGGCCG-ACCTTGCGGG-GCTCTGGAC--CCCAGAGAAGGAGGCCTGG-----CCTCCAGCCAGGCAGAGCAGCTCTGATAATTAGCGTCAGTCCGGTGGTCGAGGA---GTCTCTGTATTGTTTCCACCACCTGGAAGGG-CCTAATCAAAGGAAAGATCTGTGTGGTGGGTAAAGAG-CGTCTTGAACATAGTTTCATTAAGTCTGAGATAACAGTGGAGTGCAGGCCCAGTGTGGGC-CTCGGGCCG-CAGAGCAGCTCCAGCCAA------------GCGTGCCT--------------------------------------------------------------------------------------TCACCTGCTGCAGTCAC------GG--------TCTGTGGAAA---GAGGGGCCGAGGAATT-------------ACATCGG----------------------------------------------GAGGCAATTCTGGGGCTCAGGG---GCCGGGTCTGTC---------------CTTAAGGGTTTCC---CGAGGGCTTCATCCTCCTAAAATATTCTCATTCACCCCGCGGGCTGGCAGCTGGACAGA-------------------------GAGCAGGCAGCCAC     
22 Pteropus_vampyrus-NW_011889090.1-175914_176135       78.0%  23.6%    ---------------------------------------AGCAAGGG-GAGCTGACCAGCTCCA-------------CACA---GGGGTGTGTGCGTGA--------GTGGGGGGCTCGCGGGGCCCCTCCTGAAGGCCCCCCAGTGGGGACAGAGCCTGCCTGATCAGTGTGGAGCTG--ACAGATGGCTCAGACCTGCAGATCGGCATCCCCT-------GCGC------------CCCGTCTCCCCTGCCTTCCCCACCTCCAAGGGCATCTCTGGGGTCAGCAGGCCCTTCCA----GAATGGCAAGGCTGCCCCGAGGGCCTGACCACAGGCTG--------GCCAGCGCAGTGGGGTCCA----GGCCTCTGAGGTGGGAGGAGGGGAGGGCCCC---------------------------------TCA---TGGAGTACATGGTCCAGCAC-TAAGTCTTGGTTTGAAGATGTCCCGTGTCGGGGCTCT------------------GAGAAGCGTACCCTGCTTGCCCCTCCCGTAGGCACGCGGGGCCTCTCATGCACCAGGACTGCCCAGGCCCGGCTG------------------------------------TGTCG-----------GCCTCCAGTGATCACCCAGGAAGCCCCGGGCGGTGGGCAGGCAGGCTGGGCTCCGGGCTGATTCCAGAGAGGAGTGAGCGGGAGGCTGTTGGCCATCGTCCCCAGTGGTTAGGACGGTGGAGACGACCCCGATTCCTGAGTGCCTGGGCCGCCCTGCCCTCTGCTCGGCCACCCTCTGCAGATGCTCAGAGCCAGGCAGGGGCTGACC--------TCGGCTG---GCAGACAGGCCGGGGGTCAGCGTCAGCTTGG-CCGCGCGACATCTCAGT-GTTGTTTCTGC---------CCCTGGAG---------CTGCCTGATCAG-----AGGAG-G-GATCTGTGTGGTGGGTGAAGAGTGAACGTAGTGTNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNN-NNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNNNNN--------------------------------------------------------------------------------------NNNNNNNNNNNNNNNNNN-----NN--------NNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNN-N----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
23 Ursus_arctos-NW_020656172.1-186938_187113            74.2%  33.0%    --------------------------GGTCTGTGTATGAATGAAAGG-GCGAGGGGGAGGCCCT-------------TGGG---CTGCTGGCCAAGGAC--------TAGGGGGGCTCACAGGGCCCCTCCTGGAGGCC--CCCACGGGGACAGAGCCTACCTGGGCAGTGAGGAGCTG--ACAGATGGCTCAGGCCTAAAGATCAGCCCCCCAC-------CTGT-----------------ACCCTGCC---GACCCTACCTCTGGGGACAGCTCTGGGGCACGGGGCTCTTCCA----GACTGGTGAGGCT--GTCAGGGGCCAGGCAATTGGCTG--------GCTTAGAACTCAGGGTCCAGCCTGGCCTCAGAGGTGGGAGGAGAGGATCGTACCCTCG-CAGAATGGGGCACGAGAGCACACAGGCTCCC---AGGGCCTGAAGGTCCAGTGC-AAAGTCCTGGCTTGAAGATGCACGAGTGCTGGGAGCCCTGGGGAGTCC---------------ATGCCTGCCTGCGCCTCCTGGAGGGACACTGGGCCTCTCATGCAGTCTCTGGGCACAGGGGTCCCCT---ACAGAACCCTTTG------ACCCGCCCCTGGCTTGGCTGAGTCTGGGCTCTGACCAGATCCTCTTGAGGCGGCCCAGAGCAGTGGGGAGACCGTGCAGCCTGGGG--------CCTGCAGG-GGG---T-TGGGCTCCGGG-CTGGCTGCAGAGGGAAGTGA--GCAGCAGGGGTGGGGAGTTGACGTTGGCCTGGAGCTGTG--------GACCCCAGAC---CCTGGGCAGCTCAGACCCAACCAGCTGTGTCCACAGTA----------------------------GTCCCCGAGAGCCTGGGCCTCCCTGGCCATCTTC-GTGG-CCACCCTCCCAGC-GCCCTGGAG--CCCAGGGAAGGGGGGCTGA-----CTCCCCGCCAGGCAGAGCAGCTCTGCCCATTAGCGTCAATTGGGTTGTCGAGAA---ATCTCAAGATTGTTCCCACCACCTGGAAGTC-CCTGATCAAAGGAGAGACTTGTGTCGGGG---TAAAG-AGTGCCTTGAACAGTTTCACGAAGTCTGAGATAACAGCGGAGTGCAGGCTAGGCCCAGCG-TGGCCCTCG-GACGGCCCTCAGAGTGGC------------TCCAGGCT--------------------------------------------------------------------------------------GAGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
24 Cavia_porcellus-NT_176233.1-177363_177552            70.1%  27.2%    -----------------------------------------------AGG--GCAGCTGGCTGT-----------GCACCG---TGGCTCTGGGAGGAG-GTGGAGTGTGGGGTGCCTTGTGGGCCCCTCCCGAGAGCC--CTGGTGGGGACAGTGCCTGGGTGCAGAGGT--GGC-------AGACAGCTGGTGTCTGATGTCAG-ACCCCTTT-CCCC--TGCCTGCCTGGGGCTG-----CCCCTCACACCGTTGCACCTGCAGGGGCAGCCCTGG-GCTACCAGGCCCTTCCT-----CAGGGTGAGGCTGCTGCAGGGGCCAAGCAACAGGTGA---------CCCAGGATGCAGGGCTGGAGCAGCCCTGGAGC--------AGAGGACCAACGCCTTCCGGGTCAG-----AGC-------------------GTGAGCT-ACAATCGCAGCTCCAGGGCTCAGCTTGGTGAGCGCCCTGTGTGG---------------------------TGGTAGCTCTTGCCTGCCCCGTAGGTCCCT-----GAGGTCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTGC--------ATCCTGCGCCCGGTGTGATGGGCCT-----------GCAGCCAGCTCCGG------------------CCTCC-----------------------------------------------------------------------------------------CCGATAATTGGCGTCTACGGGACTGTAGTGGA---ATCTCAATACTGCTTGAGGCAGCCTGGAACT-CCTAATCAGAGCGCAGAGCCGCGCGGC---AGATGGAGTGCCTTTAACATAATTGCATCAAATCTGATAACACGGAACATGGGCCGAGTGCCCTTGCCCTCGG------GCCTGACCAGCCCAGAGC--ACCTTGGAGCCCTGAAGGCTGGCTTGGCAGAGGGCATAGGAGAGACAGCGTCAGGCTGCCGTGTGCTGAGTCTAGGATCGAGGCTGGGCTGCTCAGGCCCTGTGGGCCCCACCTGCGTGGCACTTTCCCTCCAGCCCAGAGCAGGCGGAGACCCCGCCCCAGGCCCCTGCCCCTGCTGCCCATAGGGGAGGGCATTGTCTCTGGAGAGTGACCGGCAAGTGCCCTTGTCACCAGGGTGCTCTTTGACTTGCAGTGTGCACTGGCCTGGCTGGCCCGGGAGGGGTGGTCAGCTCCTGCAGGTGAGGCTGTCC---CTCTAGGCTCACGTCAGACACCATG---------GTCCCAGCTGGTGGCA--GCTAAACCCTGTGC----GAGTG---------     
25 Propithecus_coquereli-NW_012152752.1-175066_175202   76.8%  33.3%    ---------------------------------------------TG-TGCGGAGTG------------A-------GGGGACGGTGCTCTCAGGGGCTTGCTGAGTGCCGCAGAGTCTCGCAGGCCCTCTTGAAGGCC--CCGGGGGGGACAGGGTCTGCTGGGCAGTGGGGGCTGGC----GGGCGGCTGGCATCGGCACCCTGGCACCCCTG---------CCTGCCCAGG-----CTGAGCCACACTCCCTTCCTGACCCT-GGGGCAGCTCTGGGGTCAGCAGGCCTTCGCC----------------------------CAGGCAACAGGCTG--------ACTTGGGATGCGGTGCCGAGAGCGGCCTTGGAGC-GGAAGGAGGGACAAACGCCCGTCCTTGAATTGGACGCAG--GTGCACAGGCCCCC---CCTCCA-----------------AGTCTCTGCC--------------TGAAAAAGCTC----------------TGGGAGGGCCACACGCACCTGCGCCTTTT-GAAGGACCGTGGGCCTCTGGGCACGCAC----------------------TTCCACCCCCTGGCCCCACGCCTGCCCCAGGCCTGGCCCTGTCATCGTTCCAACCAGACCTCCTG-AGGAAGCCCAGGACAGGTGGAGCCGGGGCAGAG------------------------------------------------------------------------------------GGCGTTGCCGTGGAGCCACG-GGCCTC-GGACCCCAGC---CCTGGGCAGCTCAAAGTGGCCCTTC----TCCACGGTGGTCAGGCCAGCCGGTCTGGGAGCACCTGGTCTGGGAGCACTTGG-CCTCCCCGCCCACCTGT-GCGGCCACCCTCTGTAGGTGCTCTGGGGCCGAGGGAGGGAAGACGTGGC-----CTGCAGCCCAGTTCGAGGGTCTCTAACAATGTAGTAGA-------------------ATCTCAATG----------TTGCCCTGAATTGCCTGATCGGAGGGGAGTTCTGTGCAGTGGGCAAAGAGGCAGCTTGGACATAGTTTCATTGAATCGAACAGAGCATTGCAGATGTGGGCTGGGCCCAACGTGGGCCCAA-TTGCCCGAGAGTACG-------CGTGGGCCGCTGAGGCCTGGCCCGGCAGCAGGGGCTTGG--------------------------------------------------------CTGAGGTGTTCCTGCAGGTGCGCCG-TTTCCA--------CTG---GTGGGAGGAACAGCCCTGTGACC-------------ACGCTG-----------------------------------------------GGGGCATTTCCGGGGCTGGATT----------------------------------CAGGCTTCC---CAAGAGCCTCA---------------------------------------------------------------------------------------     
   clustal                                                                                                                                                                                                                                                                                                                                                                                                                                                                    .