Reference sequence (1): Target
Identities normalised by aligned length.
Colored by: consensus/70%

                                                               cov    pid  1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .         .         .         .         :         .         .         .         .         6         .         .         .         .         :         .         .         .         .         7         .         .         .         .         :         .         .         .         .         8         .         .         .         .         :         .         .         .         .         9         .         .         .         .         :         .         .         .         .         0         .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .       ] 1378
 1 Target                                                   100.0% 100.0%    --------C-------------CAGGCAAGCCGG-CACCTGGGGTGG-AGGTGGCCCTGGGCTCTGGC-CTTTGCCCTGTCACTGG-----------CAGGGCGGTGTGGGCGGGGCCGGGCGAGGTGAGGAGTGGCC-----------------------------------GTGCCTCCGCTGACG-GCCGTGTTTCTCCCG---------TGAGGAG--------TGGCCGTGCCTCCGCTGACGGCCGTGTCTCTCCTGCGAGGAGTGGCTGTGCCTCCGCTGACAGCCGTGTCTCTCCCGTGTCCAGTGGAGCGGTGCATGGGTGCCATGCAAGAGGGGATGCAGATGGTGAAGCTGCGTGGCGGCTCCAAGGGCCTGGTCCGCTTCTACTACCTGGACGAGCACCGCTCCTGCATCCGCTGGAGGCCCTCACGCAAGAACGAGAAGGCCAAGAGTGAGTGGGAGCCCTGGGGTGGGGACAAATCAGAGTCCCTGGGGGGACAC----G-ACGGT--AGGGACCCTCCC-------------AGGGCAGCCACTGAT-GGCTGAGGAGCAGCGAGACC-CTAG-GCC--TGGACACCTCTGGGCTCA-----GTGGCCTTGG--GGATCT-GCAGTGACCTCGGGCTGTGGG----------GTAGGAGGGA-TC-CAGGCCCCCTGCC---CGCCTGGCAGAGCTCCCTGGGACTCAGTGAGGACCGAGTAGCACTGTG----CCCAGCCCTGTGCTGAGTGCTGGGCTGGAAGGAGGGGCACAGCATAGTCC---ATCTAGCTGGGGAGGTCACA--GCTCCCCATAAACAGAAA-----------------CGACCCC-----C-ACAGAGGTATGCTGATGGATGG------------GTATGGGTGCAAA-----------CAGTGGCTCAG---GCAGCCACTG------GGCATGGCTGCTGGAGGGAGCAGGGGCCACCCGAGA-TGGAGGCT----CTGTGCAGGGGGTGGG----TGGGGAGAGTTGA--GGCACACAGGGAAC-----------GGGTAGGGTCCCACGGTTTGGGGAGAGACATGGCAGTCCTCAAGGGCTGGGATCAGGGCG------------CA-GCCA-----------------GGGTTTCTGATGGCTTTGCTGATGGTCAGGACCCAGGCATGCCA-GGCAAGGCCTCAGCCCAGCAGTTGCCAAGC-----GTGTAGCCACTT------------------------------------------------------------------------------------------------------------------------     
 2 Aotus_nancymaae-NW_018508829.1-105604_106408              97.0%  69.1%    --CGGTTCC-------------CATGTGACTGAGCAGGGTGGGGAGC-AGGGCCCTCAGTCCCCAGGACCATCTGGGGAGGAGTGGCAGGGCCCAG-CTGGGCTGTGTGACCCAGGCATGTCAGCACTTGGGGTGGAG-----------------------------------GTG---------ACT-TTGGGCCCTGGCCTT---------TGACCCG--------TCACTGACAGGGCAGTATGGGCAGAACGAGTGATGTGAGGAGTGGCCATGCCTCTGCTGACAGCCGTGTGTCTTCCATGTGCAGTGGAGCGGTGCCTGGGTGCCATGCAGGAGGGGATGCAGATGGTAAAGCTTCGTGGTGGCTCCAAGGGCCTGGTCCGCTTCTACTACCTGGACGAGCACCGCTCCTGCATCCGCTGGAGGCCCTCTCGCAAGAACGAGAAGGCCAAGAGTGAGTGGGTGCCCTGGGGTGGGGGCAAGCTGGAGTCCCTGGGGGCACA-----C-AGGGT--AGGGAGCCTCCC-------------AGAGCAGCCGCTGAT-GGTTGAGGGGTGGTGAGACC-CTAG-GCC--TGGACACCTCTGGCTCAG-----TGGCCTTGGG--GATCGG-CAGTGACCTCTGGGCTATAGG----------GTGGGAGGGA-CC-CAGGCCCCCTGCC---CGCCTGGCTGAGCTCCCTGGAATTCAGTGGGGACTGAGTATGGTTGTG----CCCAGCCCTGTGCTGAGTGCTGGGCTGGGAGGAGGGGCAGAGCATAGTTC---ATCTAGCTGGGGAGGTCACA--GCTCCCCATAAACAGAAA-----------------CGACCCC-----C-ACAGGGGTACGCTGATGGGCGG------------GCATTGGCCCAGC-----------AGCTGCTGG-GAAGTGGGGCTGGA------GGGAACAAGGGCTGCCTGAGATGGAGACTGCAGTGG---------------------GTAGAC-A----GGCAGGATTGTGG--CACACAGGGAACAG-----------GG-TGGGGTCCCCCAGGTTGGGGAGAGACGTGACAGTCCTCAAGGGCTGGGAGAAGGGCA------------CA-GCCAG-----------------GGTCTCTGCTGGCTTTGCTGACGGGCAGGACCCAGGTGTCCTG-GGCGAGGCCTCAGCCCAGAGGTGGCCAAAG-----GTGTAGCTGCCTTGGGCCCC----------------------------------------------------------------------------------------------------------------     
 3 Chlorocebus_sabaeus-NW_023666054.1-203229_203711          91.6%  54.2%    ----------------------------------------------------------------------------------------GGGCCCAG-CTGGGCTGTGTGACCCAGGCAAGCCGGCACCTGGGGTGGAGGTGGCCCTGGGCTCTGGCCT-TTGCCTTGTTGCTGGCAGGGTGGTGTGGG-TGGCGCCGGGCGAGG---------TGAGGTG--------TGGCTGTGCCTCCGTTGATGGCTGTGTCTCTCCCGTGAGGAGTGGTCGTGCCTCTGCTGACGGCCGTGTCTCTCTCATGTCCAGTGGAGCGGTGCATGGGTGCCATGCAAGAGGGGATGCAGATGGTGAAGCTTCGTGGCAGCTCCAAGGGCCTGGTCCGCTTCTACTACCTGGATGAGCACCGTTCCTGCATCCGCTGGAGGCCCTCACGCAAGAATGAGAAGGCCAAGAGTGAGTGGGAGCCCTGGCGGGGGGGCAGGTCAGAGTCCCCGGGGGGACAC----G-AGGGT--AGGGACCTTCCC-------------AGGGCAGCCACTGAT-GGCTGAGGAGCAACGAGACC-CTAA-GCC--TGGACACCTCTGGGCTCA-----GTGACCTTGG--GGATCC-GCAGTGACCTGTGCTGAGTGC----------TGGGCTGGGA-GG-AGGGGCACA-GCT---CCCCATAAACAGAAACGAACC--CCACAGGGGTATGCTGATGGGTGGCCCAGGCAGCCACTGGGCAGGGCCGCTGGAGGGAGCAGGGGCCACCGGAGATGGA-GGCTCTGTGCAGGGGGTGCACG--GGCA-GGGTTGAGGCACACGGGGAATGGGG--TGGGGTCCCA-----C-AGTTTGGGGAGAGACGTGGCAG------------TCCTCAAAGGCTG-----------GGATAAGGGTGCGGCCAGGGTCTC----------CGCGGGCTTTGCTGATGGGCAGGACCCAGGCA-TGCC----------CGGCAAGGCCTC-A----GCCCAGCAATTGC--CAAGCATGTAGCCA-----------CTTTGGGCCCCTGGAGA--GAGCCACGCTGTGGAGCCCCCAGGCGGTCCTGAGGTCATGA------------CA-GCCTC------GATGCACCTGAGCACAGAGCTGGGGGTCCCTGGAGCCGCTGT-----CCCCACC-TGTGGCACTGGAGCCTTGGAGGTGGCCCGG-----GTCTTCCTTGGAACGTGGAG----------------------------------------------------------------------------------------------------------------     
 4 Sapajus_apella-NW_022437067.1-179776_180301               96.6%  59.1%    --------C-------------CAAGTGGCTGAGCAGGGTGGGGAGC-AGGGCCCTCAGTCCCCAGGACCATCTGGGGAGGAGTGGCAGGGTCCTG-CTGGGCTGTGTGACCCAGGCATGTCGGCACTTGGGGTGGAG-----------------------------------GCG---------GCT-TTGGGCCCTGGCCTT---------TGCCCCA--------TCACTGGCAGGGCGTTGTGGGCGGAGCGAGTGAGGTGAAGAATGGCCGTGCCTCTGCTGACGGCCGTGTGTCTCCCGTGTGCAGTGGAGCGGTGCCTGGGTGCCATGCAGGAGGGAATGCAGATGGTAAAGCTGCGTGGCGGCTCCAAGGGCCTGGTCCGCTTCTACTACCTGGACGAGCACCGCTCCTGCATCCGCTGGAGGCCCTCCCGCAAGAACGAGAAGGCCAAGAGTGAGTGAGACCCTGT--TGTGGGTGAGGCTGGAGTCTCTGGGGGCACA-----C-GGGGT--AGGGAGCCTCTC-------------AGAGCAGGTGCTGGT-GGTTGAGGGGTGGTGAGACC-ATAG-GCC--TGGACAGCTCTGGCTCAG-----TGGCCTTGGG--GTTTG--GCATGACCTCTGCGCTATAGG----------GTGGGAGGGA-CG-CAGGCCCCCTGCC---CGCCTGGCTGAGCTCCCTGGAATTCAGTGCGGACTGAGTATGGCCGTG----CCCAGCCCTGTGCTCCTCCCTGGGCTGGGAGGAGGGGCATAGCATAGTTC---GTCTAGCTGGGGAGGTCACA--GCTCCGCATAAACGGAAA-----------------CGACCCC-----C-AGATTGGGGAGAGACATGACAG------------TCCTCAAGGGCTG-----------GGAGCAGGGCGCAGCCAGGGTCTC----------TGCTGGCTTTGCTGATGGGCAGGACCCAGGTG-TCC----------TGGGCGAGGCCTC-A----GCCCAGAGGTTGC--TAAAGGTGTAGCCA-----------CCTTGGGGCCCTGGAG---GGAGCCGTGCCTCGGAGCCCCCAGGGGACCTGAGGTCACGA------------GA-GCCTC------GATGCACCTGAGCGCAGAGCTGGGGTCCCTGGAGGCGCGG-------TCTCACT-GGCGGTGCTGGAGCCCTGGAGATGGCTAGG-----GGATTTCTCGGAACGTGGGGA---------------------------------------------------------------------------------------------------------------     
 5 Galeopterus_variegatus-NW_007727608.1-237674_238445       91.6%  51.5%    -------------------------------------------GACA-AAGGTGTCCCTTGGCCAGCACC--------TGGGGTGGCAGCAGCCCACCAGGCCTGGTCTTGGCCCCATAGTGGGCAGGTGGGTGGTGGATGGTCGGG--TTCT-GTGT-CTGCCC------TGGGCACACGGGGTCCT-GGGGTGGGTGGCAGG---------GACCAGG--------CTGCAGTGAGGGTCGTGTTGCCGAG--AACTCACAGGCGTCCATGTCTGTCTCTCTCTGTGCCGGTCTGTCCGTCTGTATCCAGTGGAGCGATGTATGAGTGCCATGCAGGAGGGGACACAGATGGTCAAGCTCCGCGGCAGCTCCAAGGGCCTGGTCCGCTTCTACTACCTGGACGAGCACCGCTCCTGCATCCGCTGGCGGCCCTCGCGCAAGAACGAGAAGGCCAAGAGTGAGTGGGCAGCCCGGGGGCGCAGGGGGCAGGGGCACACGGGGGGGAC--------------------CCTTCC-------------AGAGCAGTCGCTGGGCAACTGAGGGGCAGGGAGACCCCGAG-CCC--TGGACGTCTCCAGCCTCAG----CTGGCCGTAG--ACGTCT-GCAGAGACCTCTGGACCTGGGGGTGGGG-AGGGTCAGGGGC-CC-ACAGCCCGCTGCC---CTCCTGGCAGAGCTATCTAGGACTCAGGGGGACCGAATGGC-----------CCCAGTGCTGTGCCAAATGCTGGGACGGGGTGAGGGGCAATCGGTCTAGC-----------AGGGACTTGAGA--GCTCCCTGTGAACAGAGTAAGACCCTGGCT--GGGGCATGTTGCGGGT-GGGCTGGGGTGCCAAGTGCTGG------------CCCGGGCAACCTG---------------------GCATGGGGGCACTT------GGCATGGGGTGTGGAGGCTGCGGGGGCTGCCTGAGCTGGGAGGCT----TTGTGCAGGGAGGACA----GGTAGGGTTGCGG--AAGGGAGGGAACCA-----------GATGGTTCCCAGGGATCAGGTGGAGACGCTTGGGAGTCTTCCCAGTCCAGG---------------------------------------AGAGGGACATTTCCGGTGGCTCTGCTGACAGGCAGGATCCAGGTGTACCAGGGTGGGGCCTCAGCCCAGTGGTTGCCAAGG-----ATGCTGCCACCACAGGG-------------------------------------------------------------------------------------------------------------------     
 6 Balaenoptera_acutorostrata-NW_006725355.1-181848_182335   82.1%  35.7%    ----------------------------------------------------------TGGGCCG-------------GCGC--CT-----------GGGGCCGCAGGCAGGCCTGGGGGTCTGAGTTCGGTGCCCTGGTGGGTGG---GTGGTCTCT-GCACCCCCCTGAGCACGTGGGGGGTGGGGCTGAGGCTGCGATGAG---------CACAGAGGGGCTGCCGCAGCGCTCACCGGCCCC-------CCGTCTGTGTCTGCCTGTCTGTGTCGGTCCGTCTGTGTGCCGGGTCGGCGGGCCTCCAGTGGAGCGATGCATGAGCGCCATGCAGGCGGGGACACAGATGGTGAAGCTTCGTGGCAGCTCCAAGGGCCTGGTCCGCTTCTACTTCCTGGACGAGCATCGCTCCTGCATCCGCTGGCGGCCCTCACGCAAGAACGAGAAGGCCAAGAGTGAGTGGGGTGGCCCTGGGTGGGGGAGCGGTGGGCAGGGCAGAGCCCGCAGACCAGCAC-CCAGGGGGGCAGAGGACCC----TCCCAGAGCAGCCACTGGGCAGCTGAAGGGGCAGCAAGACCCTGAGCCC--TGGA----------AGT---------CCCCAGGCCTGGCCC-ATGGGCTCAGCTGGCCTTGGAGA-TCCT-CAGTGACAT-------CT-----------------------GGACGCAGTGGGGTGAGGGCCCTGGCCCTGCTGC-CCACCTAGCAGAGCCCTCTGGGACTCAGTG--GAGACTGAGTGGCCCCAGCGCCCAGCCCT--G--CACCGGATGCTGAGA--TGGGCTGAGAGGCAAAAGTCCTTCAGTCTAGCCGGGGAGATAAGACCG-CTCATGAGCAGAGA--GAGAGACCCTGCCGGGCACCCTGAGCGTACGACCCCG--G-TGCCGAACGCTGGCCCAGGCAGCCTGGGGTGTGAGCAGCTGACAGGCGTGTG--GAGGCTGCAGAGCTGTCCGGATGGGTGGTGGCG----GGCAATCAGCTGTGAGGATTTGGGCAGAGGGACCAGGCTGGGGGTCCTGGGGGTCA------------------------------------------GGAAGAGACACGT-GAGTCCTTACA-GGCGACAGAGGGGACTTTACGGCCCCTCCTCTGGCTTTGGCGACTGGAGAGACGCAGGTGTGCCGGGGCAGGGCCTCAGC-C-C-------------------------------------------------------------------------------------------------T--------------G------------------------------------     
 7 Neophocaena_asiaeorientalis-NW_020174791.1-181366_181797  82.4%  29.4%    ---------------------------------------------------------------CC-------------TAG---AT-----------TGGATCTGTGGCCTGGGCCAGCACCTGGGGCTTCAGGCAGGCCTGGGGT---CTGAGTTCT-GCACCCCCTTGAGCACGTGGTGGGTGGGGCTGAGGCTGCAATGAG---------CACAGAGGGGCCGCTGCAGCGCTCACCAGCACCCCTGTCTGTGTCTATCTGTGTCTGTCTGTGTCGGTCCGTCTGTGTGCCGGGTCGGTGGGCCACCAGTGGAGCGATGTATGAGTGCCATGCAGGCGGGGACACAGATGGTGAAGCTCCGTGGCAGCTCCAAGGGCCTGGTCCGCTTCTACTTCCTGGATGAACACCGCTCCTGCATCCGCTGGCGGCCCTCACGCAAGAATGAGAAGGCCAAGAGTGAGTGGGGTGGCCCTGGGTGGGGGAGTGGTGGGCAGGGCAGGGCCCCCAGACCAGCAC-CCAGGGGGGCAGAGGACCC----TCCCAGAGCAGCCACTGGGCAGCTGAAGGGGCAGCAAGAC-CTGAGCCC--TGGA----------AGT---------CCCCAGGCCTGGCCC-ATGGACTCAGCTGGCCTTGGAGA-TCCT-CGGTGACAT-------CT-----------------------GAACGCAGTGGGGTGAGGGCCCTGGCCCTGCTGC-CCACCTAGCAGAGCCCTCTGGGACTCAGTG--GAGACTGAGTAGCCCCAGTGCCCAGCCCT--G--CACCAGATGCTGAGA--TGCGCTGAGAGGCGAAAGTCTTTCAGTCTAGCCGGGGAGATAAGACTG-CTGGTGAGCAGCGA--GACCC----TGCTGGGCACCCTGAGGGTAC-GACCCG--G-TGCTGAATGCTGGCCCAGGCAGCCTGGGGCTTGAGCAGCGGACAGGCGTGTG--GAGGCTGCAGAGCTGTCTGGANNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------NNNNNNNNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------------------------------------------------------------------------------------------N------------NNN------------------------------------     
 8 Tupaia_chinensis-NW_006198262.1-179329_179648             90.9%  41.1%    ----------------------------------TATCTGGGACTGA-GCTGTGTCTCTGAGCCAGCACC--------TGGAGCGG------CAGG-CAGCCCTGGGGGTCCGGCCT------------TGGCTAGCAGTGGGCAAG------------CGGGCAGATAGGTAGGTG----GTCGGCC-TCTGTGCCCATCTTG---------AGCACAT----GGGATCCCCGGGCAGGTGGTGGGCTTTGTCGTGGTGCTTGTTGACACACTGTGTCTGTCTCTGAGTTAGTCTGTCTGTCTACTTCCAGTGGAGCGATGTATGAGCACCATGCAGGAGGGGACACAAATGGTGAAGCTCCGTGGCAGTTCCAAGGGCCTGGTCCGCTTCTACTACCTGGATGAGCACCGTTCCTGTATCCGCTGGCGGCCCTCGCGCAAAAACGAGAAAGCCAAGAGTGAGTGCGCAGCCCGGGAAGGGGTGTGGGACAGCTCAGAGCCCTTGGGTGAGCACATAGGGTGGGGACCACTCC-------------CAGAGCTGCGCTGGACAGTTGAGGGGCAGTAAGAGCCTGAG-CCC--TGGACATCTCCAGACTCGG----TTGGCCATGG--AGTTCT-GCAGTGACTTCTGGACCATGAGATGGAG-TGGGGACAAGCCCTC-TGAGACTCAGTGG-----GCACCCAG--CCCTGTGC-------TGAATAATTGGTCTAAAGGTGGGGAGCTCCTCCTAATAGAGATAGAGATCCTAGCTGGGGCACATTGAGGAAAGGGTTGCCTGACAGCTGGGGTGGGA--GCCCTTGGCCTGGGGTGT----------------GGGAGCAG----------TGGGGCTTTGAGCTGGAGG------------CTTTGCGAGGGTT------------------GAAGCGTGTGGGGAATT------GGG-TGAGGATTCTGGGGATCAGGGAGAGACATCTAAAGGTCCTT----GTGGGCCGGGAAGTGGGTGTATACCAAAGGTCCTCTGGGTCTGTGGACA-----------GGCAGGACCCATGGGTGTCAGGGCAGGGCCTCAGG------------------------------------------CTT------CCTGTTAGCTAGAGTGCTGCTGCCATGGGGCCCTGGGGAGACCGCAGAGCCGCA-GGGAGGTC-TGCTTGCCGTTGAGCCCCAGG-----TGAG-GGCATCCTGGGGTGGAG--------------------------------------------------------------------------------------------------------------     
 9 Lemur_catta-NC_059130.1-171215_171595                     83.8%  35.8%    -------------------GGCCCAGGCGGTGGCTGAGCGGGGAGGGGCAGGGTCCTGCTGGGCAGTTGG-------GTTGGGTGGGT---------GATCGAGGCGTGTCC----CCCACCAGCACCTCGGTGGCAG-GCAGCCCCGGGCCAGCCCT-GGCCCCGC--GGTGGGCAGGTGGGTGGCC-TGGCCGGGCGGCA-G---------GGGACGGGCCGCGGTGA-GGAGTGGGGGTGCCGTGGCAGTCAC-----CCCGCGCCGTGTCTGTCACCGTGTGTGTGTCTGTCCGGCCGTGACGTGCAGTGGAGCGATGCATGAGTGCCATGCAGGAGGGGACGCAGATGGTGAAGCTCCGCGGCAGCTCCAAGGGCCTGGCCCGCTTCTACTACCTGGACGAGCACCGCTCCTGCATCCGCTGGCGGCCCTCGCGCAAGAACGAGAAGGCCAAGAGTGAGTGGCCGGCCCGGAGGGGGGCGGGCCCAGAGCCCCCGGGGAGCACGCGGGGTGGGGG------TCCCTCCC-------------G-G-GCAGCTCCGGGATCAGGTGGCCTTGGAGTTCCACAGTGACC--C------CT-GGG-CCACG-GGGAAGGCCCGTGCCCGCCTG-GCAGAGCTCCCTGGGACAGTGGGCACAG---GTGTCACCAGTGC-CTAGCCCTGTGCTGGACGCGGGGCTGGGC--TGAGGGGCAAAGCAGGAG---------------------GGGCCCCCACCAAGGTGCATTGAGGGGGGC-TTGGCCACAAACGTTGGCTCAGGCCCCTGGGGACGAGC-------------------------------CCT---GTGGAGGCTGCAGGGGCCACCTG-TGCTGGAGGCCTTG---------------TGCAGGGGACGGGTC-----AGGGTCCCGTGGGTCACAGACATTTCCAGGACCTCCTCTGGCTTTGCTGATGGGCAGGACCCAGGTGTGCCA-GGA----ACGGGCTTCAGCCCAG-CGGTTGCCAAGGGTGCAACCCCCCACGGGGCCCAGGAGAGCCTCGCTGCAGAGCCCCCG--AGGGCCTGTGCTCGGAGCGAGCCCCAGGGTGAGGGCGCCCTGA-----------GC-AGGTGGCGCCTCCTGGGCCCCAGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGGTATGAGGGCAGGGCCGGGACTG---------------     
10 Pteropus_giganteus-NW_024346980.1-167357_167531           80.8%  33.7%    -------------------------GGAGCT-----GGCTGGGCAGA-AAGCTTCCTCTTTGGCT-------------CT-G--GT-----------CCTG-------AACAGGGTCCCAGATTGGTGTGCGACCCAGGCCAGCGCCTGGGGGTCGCA-GGCACCTAGTGGGCCGGTGCTTGAGCAGG-----------TGGGG---------GTGGGGGAGCAGGCTGCAGTGGGCGGCGGG-GCAGCCGCAGCGCTCACCGGCACCCGTCTGCTTGTCTGTCTCTGCCGTGCGTCCGTCCGCTCGCCCAGTGGAGCGGTGCATGAGCGCCATGCAGGCGGGGACCCAGATGGTGAAGCTGCGAGGCGGCTCCAAGGGCCTGGTGCGCTTCTACTTCCTGGACGAGCACCGCTCCTGCATCCGCTGGCGGCCCTCACGCAAGAACGAGAAGGCCAAGAGTGAGTGGGGCGCCTGGGGTGGGGGGCCCCTCCCGGAGCAGCCCGCGCCGGGCG--TCTC-AGGGGGCTCCGGGCCACGCTCACGGGCTCAGCGGGCCCCGGAGTTCTGCAGTGACCTGAGCACACAGGACGG--GGCACGGCCGGGCCCTG---------CTGCCCACCTGGCAC-AG--------CTTCCT--GGGGCTCCGT-GGGGAGCAC-------CCAGCCCCGTGCTGGAGGCTGGGCTGGGCTGAGAGGCAGGAGGACCGTCC---GTCTGG-CAGGGGAGAGGAGACGTCCCT--------C--CAGCACGGAGGCCCCGGCCGGGCACG-CC--G--AGG---------GCG--GGACTTCGGTGCCAAAAG---------TCGGCCCAGGTGTGAGAAGCT-GCCGTGGGGGTGTGAAGACGGGGTGAGGAGGGGTCCTGGGCGGGAAGATTCGT--G-CAGGGGATGGAGGGGCAGAGTCACTCTCTGCGCAG-ACATGGCAGGGACTGGGCCGGGGGTCCCAGGGGTCAGGAAGGGACACGTAAGAGTCCTCAGGGACC--------------------------------------------------------------------------------------------------------------------AGGAGAAGGGGGTTTGCTGGCCTGCCTCTGGCTTTGCTGATAGGAGAGACCCAGATGTGACAGGGCAGGCCTCAGACCTGCAGTGGCCAAGGG------------------------CAGCACTGCCACCCCGGCCCAGGGGAGAGCCACACCCAGG-------------------------------------------------------------------------     
11 Otolemur_garnettii-NW_003852462.1-170145_170314           86.6%  34.3%    ---------------------------AGGTGGCTGAGCAGGGAAGAGCAGGGTCCTACTGGGCAGTGGG-------ATTGGATTGAT---------GACCAA---------------------------TGTGGCAG-GCAGGCCTGGGTCAGCCTT-GGCCCTGC--GGGGGGCAGGTGAGAGGCC-TGGCCAAGTGGCA-G---------GGTGTGCGCTGTGGTGAGGAGTGGG-GGTGCTGCAACGCTCACCAGCACCTATGTCTATCATCTCTGTGTCCGT-CTGTCTGCCCGCCCATCCGTCCAGTGGAGCGGTGCATGAGTGCCATGCAGGAGGGGACGCAGATGGTGAAGCTCCGGGGCAGCTCCAAGGGCCTGGTCCGCTTCTACTACCTGGATGAGCACCGCTCCTGCATCCGCTGGCGGCCCTCCCGCAAGAACGAGAAGGCCAAGAGTGAGTGGCTGCCCTGGCAGGGGCAGGCCCAATGCCCCAGGGAGCACACAGGGGCAGGTGT------CCCTCCCA-------------GCA-GCTGC---------------CATGTG----GCTCTGA--------GCCCCCG-TGGACCATG-GGGAGGGGCCGTGCCCACCCA-GCAGACCTCCCTGGGACTTGGTGGGCAC-AGAGCATCACCAGTGCCCAGCCCTGGTCTGGGTGTGCAGTTGGGAT--------------GAGGACAGAGGGCAGTCAGGCAGGAAGGGACCCCAGCAAGCTATATCAAGGAAGGGCTGGGCTGGCAGCTTTGGCTCAGTCCCTC-------------------------------------------------AGAGTGTGAAGGCTCAACGTG-AGCTGGAAGGCTTT-------------GTGCCTGAGGTGGGCTGTGGGTTCTGGGGTTGTGGGGAGGGGCGTTTTCAGGACCTTCTCTGGCTTTGCTAGTGGGCAGGACCCAGCTGTGCCA-GGG----AAGGGCCTCAGCCCAG-TGGTTATCTGGGGTGCAGCCCCATGGGTCCAGGA---GACCCTTGCCTCAGAGCCCCCAGGAGGGTCTGTATATAGAAGGGCCCCAGGGCCAGGATATCCTGGA-----------GT-AGGTGGAGCC-CCTGACCCCAGGAGGCAATGTGGGGTCAATGCCG-GGACTGCCCTCCGGGCCAGGGCAGAGAAGCCAGTTTGATTGAGGCTGT-------------------------------------------------------------------------------------------------------------------------------------------     
12 Propithecus_coquereli-NW_012152752.1-172197_172576        83.2%  36.5%    GCCTGGTCCAGGCGGCGGTGGGAGAGGCGGTGGCTGAGCGGGGCAGGGCAGGGGCCCGCTGGGCAGTCGG-------GTTGGGTGGGT---------GATCGAGGAGTGTCC----CCGGCCAGCACCTGGGTGGCAG-GGAGCCCCGGGTCGGCCCT-GGCCCCGT--GGTGGGCAAGTGGGTGGCC-TGGTGGGCGGCAC-G---------G-GACGGGCCGCGGTGA-GGAGGGG--TTGCCG--------------------TGGCACTCACCCGCGCGATGTCTGTCTGTCCGCCCGTCGCGTGCAGTGGAGCGATGCATGCGCGCCATGCAGGAGGGGACGCAGATGGTGAAGCTCCGCGGCAGCTCCAAGGGCCTGGCCCGCTTCTACTACCTGGACGAGCACCGCTCCTGCATCCGCTGGCGGCCCTCGCGCAAGAACGAGAAGGCCAAGAGTGAGTGGCCGGCCCGGCAGGTGGGGGGGTGGCTCATGGGGT----GGGGATCCCTCCCGG------GCAGCTGC-------------C-G-GTGGCTCTGGGATCAGGTGGCCTTGGAGTTCCGTAGTGACC--C------CT-GGG-CCATG-GGGAGGGCCCATGCCCGCCTA-GCAGAGCTCCCTGGGACTCAGTGGGCAC-AGGGGGTCACCAGTG-CCAGCCCTGTGCTGGGCGCGGGGCTGGGC--TGGGGGGCAAAGGGCCATCAGAGCCCCTGGAAGCAAGAGGGCACCCCAGTGAGGTGCAT-TGGGGGGGC-TTGGCTACAAACACTGGCTCAGGCCCCTGGCGGGGAGGGC--------------------TCAGCTCAGGCT---GTGGAGGCTTCAGGGGCCACCTG-AGCTGGGAGGCTTC-------------GTGCAGGGGACGGGGTC-----GGGGTCCCGAGGGTCAGAGGCATTTCCAGGACCTGCTCTGGCTTTGCTGATGGGAAGGACCCAGCTGTGCCA-GGA----ACGGGCTTCAGCCCTG-CAGTTGCCAAGGGTGCAACCCCCGTGGGGCCCCAGGAGAGCGTCGTTGCAGAGCCCCGG--AGGGCCTGTGCATAGCCGAGC-CCCAGGGCGAGGTGTCCTGGA-----------GC-AGGTGGCGCCTCCTGGGCCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
13 Castor_canadensis-NW_017871110.1-166089_166876            92.0%  50.5%    --------------------------------------AGTGGCAGG-C-GGGAC-TGTGGCTGAGT-----------TTCAGTTCCTGGGACTTGCCTGGCTTCAGTCTTCAAGGTCATCAGAGGAGATGAGCAGCC----CTGGGGGC---------TGGGCAGGCAGGTGGGTG--------GCC-ACTGTGCCCTCCTTG---------GGCACAC--------AGGGTCTTTTCAAGGAGTGGTGAGGTTGCCACAGTGCTCACGCCTGTCTGTCTGTCTCTGTATCATCTGTCTGTCTGTGTCCAGTGGAACGATGCATGAGTACCATGCAGGAGGGGACCCAGATGGTGAAACTCCGCGGCAGCTCCAAGGGTCTAGTCCGCTTCTACTACCTGGATGAGCACCGTTCCTGCCTCCGCTGGCGGCCCTCACGCAAGAATGAGAAGGCCAAAAGTGAGTGGGCAGACCAGGGAGGGGGACAGGTGGGTCCGAGCCTGGGGAAA----GCACTGGACAGAGAGCTCTCC-------------TGAGCAGCCACTGGACAGCTGTGCT----TGAGACCCTGCA-GCA--TGGATGTGTCTAGCCTCAA----GTGACCTTGG--AGTTCT-GCAGTGGCCTCTGGACTGCAATGTGAGG-GCA--GGCCAGGGCT-CTTGCCTGACTGT---TCCCTGGCAG--GGCTCTGGGACTCAGTGGGGATTGTGACTCAGTG------CCTAGCCCTGTGCGAAATGCTGGGGTCAGCGAGGGGCAAAGGGCGGTTA-----CCTAGCTTGGGGGTGAAGA--GCTTCCTGGAACCAGAGATGGAAACCCCAG--CCAAGCACAGAGTGTG-AGGCTTGGATGCCAAATGTTGG------------CCCAGACATACTG----------------------GGTGGGAGCACTT-------------GGCATGGGGTCTGCAGCAGCCACCTGAGCTGGACAGCT----GTGTGTAAAGGACAGA----CGGGCAGGGTTGGGGCACACAGAGGATGA-----------GATGGGGGC-TTGGGGGTCAGGGAGAGTCATATAAGAGTCTCACAGGTGGGAGAAGG---------------------------------GTCTTGCAGGAACCTCTGGCT-TTGCCAGTGGCAGGGCCCAGGTATGCCAGGGCAGGGCCTCAGCCCAGTGGTTGCCAAGG-----GCACCACCA---------------------------------------------------------------------------------------------------------------------------     
14 Equus_przewalskii-NW_007674960.1-182824_183331            83.6%  38.5%    ------------------------------------------------------------------------------------GC-----------CCTGGGGGTCTGAGTTCAGCCCCCTGGTGGGTAAGCAGATGGTGGATGG---GTGGTCTCT-GCACCCCCTTGATCACGTGGAGGTGGGTGTG-GGGCTGGGCTCCG---------GTGAGCGGTGGGGCTGCCGCAGCA----CTCACCGGCGCCCTGTCTGTCTGTCTCTGTGTTGGTCATCCATCTGTGTGACGGGGTCTGTGGATGTCCAGTGGAGCGATGTATGAGTGCCATGCAGGCAGGGACGCAGATGGTGAAGCTCCGTGGCAGCTCCAAGGGTCTGGTCCGCTTCTACTTCCTGGACGAGCACCGCTCCTGCATCCGCTGGCGGCCCTCGCGCAAGAACGAGAAGGCCAAGAGTGAGTGGGGCAGCCTGGGGGA-GGGGCCAGGGCCCCAGACCAGCA---------------CTCGGGGTGCAGGGACCTC----TCCCAGAGCAGCCACTGGACAGCGTGTGAGCTGCCAG-ACCCTGAGACC--GGCAAGTCTCCAGGTGG---------CTCCAGGCGTGCCGC-ATGGGCGCAGTCGGCCGTGGGGGTTCTG-CGGTAACCT-------CTGGGTGCAGGGTGGGGTGGGGGCGGGGCCCCATGCCCTTCAGGGCCCAGACTCTACCA-CGGCCTGGCAGAGCCCTCTGGGACTGAGTG--GAGACTGAGTGGCCCCAGGGCCCGGCCCT--G--TGCTTGATGCTGGGA--TGGGCTGAGAGGCAAAGGACCTTCAGTCCCGCTGGGGAGATAAGACCT-GCTGCAGAGAGAGA--GCACGCG------GGCCATGCTGTGGGTAGGGCTTTT--A-TGCCAAGGGTTGGCCCAGGCTGCCTGGGGCGTGAGCGGCTGACGTGGGGATGTGAAGGCTACAGGGCTGCCTGGAG--------TGAGGAGGGTCCTGAGCTGGAAGCATTGTGC-AGGGGACACATGGGATGGGGTCGATCTCTGAGTGGGGCACTGCAGGGACTGGACTAGGG-GTCCTGGGGGTCAAGAAGGGACACA--GAGCCCTCATGGGCAGGGA-GAGGGGTGCTACTACCCCTCCTCTGGTTTGCCCGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
15 Peromyscus_leucopus-NC_051064.1-171183_171373             92.0%  46.0%    ---------------------------GACTGGCCATGTGTTGGGGG-A-TAGGC-TATTGCTGAAT-----------GTCCTCC----------------CTGGTGCCTCAACCCACCTCAGACCACCTCAGGACCA----ATCAGAGAAGGAGTAG-TAACCACTCTGTTCCATG--------CTT-GGACAGGGCCACAGA---------GGCACAC--------AGGGCCCTTTGGAGAGAAGTGAAATGACCATAGCTCTCATAGCTTCTGTCTGTCTGTCTCTGTCATGTGTCCACCTGTGTCTAGTGGAGCGATGCATGAGTGCCATGCAGGAGGGGACCCAGATGGTGAAGCTCCGTGGCAGCTCCAAGGGCCTGGTCCGCTTCTACTACCTGGATGAACACCGCTCCTGCCTCCGCTGGCGGCCCTCACGCAAGAACGAGAAGGCCAAGAGTGAGTGGACAACCCAGGGATGGGGATGGGTGGGCCTGGGCCCGGGGAGC----ACAGGACAGGGAGGCCTCCCA-------------AGTAGACGCTGTTGTGGGCTAAGCC--CCACTGAGATGGTG-TGC--TGGTCATCTCTAGACTTAG----GTGGTCTGGG--GCTTCT-GCAGTGGGATCTGGAATAAGGAATAGGA-ATAGGTCAGATGGTC-CTTGCCCAGCTGC---CTCCTGGCAA--GGCTCTGGGACTCCATGGGGACTGGCTGACTTAG------TGCATAGCCCTATCAAATGCTGAGGTCAATGTGGGGCTATCAGACCA-----------GCCAAGGGGACGAGA--GTATACCGAAACCACAGAAGC-CCACCCAG--TCAGGCACACCGAGGG-TAGGCTGGAAGCCCAAGGATAA------------CTCAGGCAGCATG----------------------GGTCAGAGCACTT-------------GGTGTGGTT--TTCAGGGGTCACCTGAACCGCACAGCT----CTC---ATGGAGCAGG----GAGTCAGAATTGGAGCACACAGAGGATGA-----------GTCGGGAGG-CCTAGGATCAGGGAAAGATACCGGAGTCTCAAGGCTGTGAGAAGTGA---------------------------------ATTTCTAAGATCCCTCTGGCT-TTACCAACAGCAGCACCCAGGTATGCCAGGGAAGGCT-TCAGCTCAGCCTTTACCAAGG-----ATACTACCATGGAG----------------------------------------------------------------------------------------------------------------------     
16 Miniopterus_natalensis-NW_015504651.1-671986_672164       84.4%  33.4%    ------------------------------------TGCTTGACCCG-GGCCAGCACCTGGGGCC-------------CCAGGTGC-----------CCTGGGGGTCTGAGCTCAG-----CCCCCAGTGGGCAGGGGGTAGGCGATGGGTGGTCTCT-GCATCCACCTTGGCACATGGGGGATGGGCGACGAGTTGAGGGGGT---------GT---TGGGGATGCTGCGGTGCT--------CACGGTGCCCCGTCTGTCTGTCTGTCCCCTCCCGTCGTCTCCCTGTTCATGTCGGCCGGCGTGTCCAGTGGAGCGGTGCATGAGCGCCATGCAGGCAGGGACGCAGATGGTGAAGCTTCGAGGCGGCTCCAAGGGCCTGGTGCGCTTCTACTTCCTGGACGAGCACCGCTCCTGCATCCGCTGGCGGCCCTCGCGCAAGAACGAGAAAGCCAAGAGTGAGTGGGGCGCCCGGGGTGGGCCCCCTCCCAGAGCAGCCTGGGGAGGGGGCAGCAAGACCTTGGGCCCCGGATGTCTC--------AGGCGGCTCCCGGCCCCGCCTGTGGGCTCAGTCGGC-CTTGGCCA--TCTGAGGCTTTGCCAGT------AGGAGCACCAGGTGTGCC-AGGGCCAGCCTCCACCTTGGGGC--CCT-GCCTCCGCT-------GTGGTGCCCCG-GGGA-----GGGCGTCCTGGAGGAGGGGACGGGACTGCTCTGTGGAC-CCAGGGAGGTGGGTCACAGGC--CGCC--C--AGGCGGCAGGAGCTCCTGCACCCAGGCCGGAG--TGCTGGCTGCTCCGG--GCACTGGGCCCCCTGGG----------GACCCTGCGGACAGGAAGCTG-GCCCTCAAGTGTG--------------GGGTGGCCTCTGAGTG--------CG--G-GACAGCCTCCGGGAGCACCCGGGCTGGAGTGGGGAACCCTGCCCTGGGGAGG----------------------------GCCGTGACGGGTGCCCCCGCCCCGCAGTCTCCATCGACTCCATCC-------------AGGAGGTGAGCGAGGGCCGGCA---------------------------------GTCAGAGA----TCTTCCAGCGGTACCCGGATAGCAGCTTCGATCCCAACTGCTGCTTCAGCATCTACCA-------CGGCAGCCACCGCCAGTCCCTGGACCTGGTCTCGCCCAGCG------------------------GCGAGGAGGCGCG----------------------------------------------------------------------------------------------------     
17 Microcebus_murinus-NC_033661.1-169530_169747              77.8%  31.6%    -------------------------------------------CAGGGCAGGGGTCGGCTGGGCAGTGGG-------GTTGGGTGGGT---------GATCGGGGTGTGTCC----CCAGCCAGCACCTGGGTGGCAG-GCAGCCCCGGGCTGGCCCT-GGCCCGCA--GTGG-GCAGGTGGGTGGCC-CGACCGGGTGGCA-G---------GGGACAGGACGGGTGGCGGGAGCAGGGGGAGCCTCGGCACTCA-----C----CCGCACCATGTCTGTCACCGTGTGTGCCTGTGTGCCCGCCGAGCAGTGGAGCGATGCATGAGCGCCATGCAGGAGGGGACGCAGATGGTGAAGCTCCGCGGCAGCTCCAAGGGCCTGGCCCGCTTCTACTACCTGGACGAGCACCGCTCCTGCATCCGCTGGCGGCCCTCCCGCAAGAACGAGAAGGCCAAGAGTGAGTGGCCGCCCCGCAGGTGGGGTGGGCCCAGAGCCCCCGGGGGGCACATGGGGTGGGG------ATCCCTCT-------------GGGGGGGGCTCCTGGTGGCACTGGGGGAGGGCTTTGCCGCAAACA--CCGGCTCAG-GCCCCGGCG-GGGAGGGCTCAGCTCAGGCTG-TGGGGGCTGCAGGGGCC-----------------GCCTGAGCTG-GAGGCCTTGTGCAGGGCACGCGGTCGGGGCCCCAGGGTCAGAGATGGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTCCAGGGCCTCCTCTGGCTTTGCTGATGGGCAGGACCCAGGTGTGCCA-GGC----ACGGGCCTCAGCCCAG-CGGTTGCCAAGGGTGCAACCCCCGTGGGGCCCTGGGAGAGCCTCGCTGTGGAGCCCCAG--GAGGGCCCGGCATAGGCGAGC-CCCAGGGTGACGTGTCCTGGA-----------GC-AGGTGGCGCCTCCTGGGCCCCAGAGCCAGCGTGGGGGCAGGGCCG-GGGCCACCCTCTGAGCCAGGTGATGTGGCGCTGCCTGGAGGCTGCCCAGGCAGGAGGAGCCCCAGCACCCGGTCGGGAGCGGCTGCTCTGAGCCAGGCACTGTTCCCATACTGGGCATCCTGCAGAACTCGGCTGACGCGGAGCTGATGTTCTAGCGGTGTGGGAGGCAGCGCCACCCAACA-----     
18 Chinchilla_lanigera-NW_004955486.1-171871_172036          83.9%  34.4%    ------------------------------------------------------------------------------TGGAATGACA-----ATGGGCCCCAGCTGAGCGGCCAGCAGCACGGCCCCTGGGACCTCAAGTGGTCT---CAGTCCCCACAGCCAGTGGGGCAGGGGTGGCAAGTGACCCTGGGTGTCTAACCCCCAGCCTCAGCGGGCAGGTCGGTA-GGGGTGGCTTTTGTGCCCCTTGGGCACACTCAGTCCAGCCCGCTCACAGCCCCACCTGTCCTGTGTCACCTTCCCCGTGTCCAGTGGAGCGGTGCATGAGTGCCATGCAGGAAGGGACGCAGATGGTGAAGCTCCGAGGCAGCTCCAAGGGCCTGGTCCGCTTCTACTACCTGGATGAGCACCGCTCCTGCCTGCGCTGGAGGCCCTCGCGCAAGAACGAGAAGGCCAAGAGTGAGCGGCTGTCCGGGCCCCCCGGGGCACTCTGGGTGGTGGAGTGGGAGGGGCCGGCCCTGCCCAGCTGCCCAC--C----------TGGCAGCACCCTGGGC----------CTGGATG-GCTCTGGGCCAGATGGTGGGGTGGAGGGGA-------TAAGAACCTCCAGAGAAAGAGACCCCAGCTGGGCACACTGGGACAGGACCTGGTGTGCCAGG-CAGGGCCCCAGCC----CAGCA--------------GTTGCTGAGGGCACCATCACAGG-CC---------CCAGGAGAGAGCCATACTG--CAGCGCCCAGCAGGCCCCAGGAGAAGGGC--C--CCGTGGCAGGTGCGC--TGGACGGGTGGGGCATAG--CTCGCTGCCT---GGCGTTGGC----TC-TCTTGTCTCGTCTGGCTGC-CT----CAGGGTGACCATGCTGGGCTGGGGCA-------GCCAG------AGGAGCCCAGTG--------------------GC--CAGTCGGGGCCTCTGCTCTGTCG--GA----GACCCCATGGGAACTC-T--GCCACAGAGCTGGTGTTCCACTGGCCATA----------TGGCCACTC--CCTAGCG-TGCTGAG---CCTTGCAAGACACGGAGATCCAGAAGGGCGCC------------G-------------GGCAGAACGCCAGGCCGACCAGGGTCCTGACACCCACCTGAGACC-------CAGTTTGGTGCCAGGAGCC------------CT-------------------------------------C-----------CCAGCC---TTGGGGGAGTCCTGTGGGCAACAATA-----------------------------------------------------     
19 Urocitellus_parryii-NW_020540697.1-275953_276126          84.8%  37.4%    ------------------------AGCTGT-------------------GGGCTTTCCATGCTCCTTCAG-------TCTGCGT-GGT---------GGCYCCTCAGGGTCC--AGACTGACTGCAGCATCGTCCAGG-TGTTTCTGGGATGGGCCAC-GGCCCAGC--AGAAAAGGGCAGGTCCCCC-CTGGGGTCTCGCCTG---------GCCCCAGCCCTGGGTGG-GTGGATGGGGTAGGCAGG----------GCGTGGGCTGCCGCAGCTCTCCCGGCCCTGAGGTCTGTCTCTGCTGTGTCCAGTGGAGCGGTGCATGAGCAGCATGCAGGAGGGGACCCAGATGGTGAAGCTCCGAGGCGGCTCCAAGGGCCTGGTCCGCTTCTACTACCTCGACGAGCATCGCTCCTGCCTCCGCTGGCGGCCCTCRCGCAAGAACGAGAAGGCCAAGAGTGAGTGGGCAGCTTGGGGAGCGGGRGGGACAGTCCCAGGGCTCAGGAGCCCTTCCAGAGC------AGCTGCTG-------------GACAGTTGGGTGCCGAGCCCCTGCGTCTGGGGTATCTCTAGACTC--AGGTGGCCT-TGGAGTTCCACGGTGGCCTCTGGACTGCAGG-GCGGGAGGGGCTGGGGCTGC------TC-AGGGGCAGGGT-----CCTGGGGTGAGGTGGGCTGGGGGCAAGCAGCCCAGGGGGGGGAGAAGAGCAGCCAGAAGACAGGAAAC--AAGACCTGAGCCCGGCGCCCAGGGTGGGCCTGGGGYACCGAGCACTGGCCCAGGCAGCCTGGGTGGGAGCACGAGGG----------GAGATGTRGCCAGCTTTGTGCAGGGGCAGATGGGAGAATCCGGACACTGAGGGCCAG-----GTAAGAGGCCAGGGTGGAGGGACACTTGRGCCTCACAGACCAGGGGTAGGTGTGTCCAGTGCCTGCTCTGGCTTTGCTGAAGGGCAGTATCCAGGTGTGCCA-GGG----AAGGGCCTCAGTCTAG-TGGTCGCCAAGGACACCACCACCGAGTCCCAGGAGGGAACACGGTGAGGAGGTCCTGGG--TTGGATGGCTCCTCCAGACCCCCAGGGGCCAGCATGAACTG-------------TC-CCTTGGGT---CCTGGGAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
20 Carlito_syrichta-NW_007256000.1-137759_138101             84.5%  34.8%    -----ATCCCTGGGCTGTTGGGAGAGGGATTGC---------------AGGGACCCGGCTGGGCCGTG-G-------CCTGGCCATGT---------GACTGCGGTGTGTCC----CTAGCCAGCATCTAGGGGCCCG-GGATC-TGGCCTCAGCCTT-AGCATGGGCAGGTGGGCTAGTGGGTGGCC-TCTGTGCCCTGGACA---------CACACGGTCCCGGGTGGGCAGGTTG-----GGG---------GTGGTGAGGGCAGGGCGTGTCCCTGCTCACGATGCTCACGTCTGTCCCCATGTGCAGTGGAGCGGTGCATGAGTGCCATGCAGGAGGGTACACAGATGGTGAAGCTCCGTGGCAGCTCCAAGGGCCTGGTGCGCTTCTACTACCTGGACGAGCATCGCTCCTGCATCCGCTGGCGGCCCTCACGAAAGAGCGAGAAGGCCAAGAGTGAGTGGGCTGGGGGATCTGCGGGCCTGGGGCGGGGACCCTCTGGAGCAGCTGTCAGATG------CCGAGGGC-------------CAGGGAGGATCTGGGCATCGCTGGGCTCAGCTGGTCTTGGGGGTCCGCCGTGACATCGGGACTATAGCGGGGGCTGAGCCCCTGCTGG-GCAGAGCTCCCCGGGTCTCAGTGGGGAC-AGGTGCTGGGT----------------------GGGGGTGAGAGCACACATGGACAGAGACCCCG-----------GAGGGGCC-----CACGGAGCTTGGTGCA-------GACGCTGGCCCGGCAGCCTGGGCGGGGGCCTTGGGCAGGCCCTGAGCAGGCCGGATGGGCAGAGCTGGGGCACACTGGGAGTGGGATGGGAAGCGAGGTCCAGGCAGGGGAGAGACCC--------CGCGGCCACCTGGGGCAGGGGCA----GGGCTGGGACAGGACCCAGGACGTGCCCACAGCTCTGTAGGCTGCCCTGAGTGACGGGCTCCTGACTTCACTCCGG----GTCTGAGGGGGTCCTG-CCATGGGCATGGGCGCAGA------------------------TTCTAGAAACCCTCCC--AACTCATCTGCCTGTGGCGGTCCGGCATTTGAGA--------------------GG-AGGTGC-----TCTGGGCCTGGACGCCATGGTGCTCTGA------------------GATGCCAGGGCTTGGGAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------     
21 Camelus_ferus-NC_045708.1-184518_184933                   80.8%  33.3%    -----------------------------------------GGGTCC-CAGATTGACGTGTGACC-------------TGAG--CC-----------GGCACCTGGGGGTCTGAGTTTGGTTCCCTGGTGGGGGGTGGGTGGATGG---GTGGTCTCT-GCACCCCCCTGAGCATGCGGGGTGGGGGCATGAGGCTGCGGTGAG---------TCAGGGGAG-TGGCTGCAGTGCTCACGGGTG-------CCCCGTCTGTCTGTCCCTGTGCTGGTCTGTCCC---TGTGCTGGGGTCCTCGGGCCCGCAGTGGAGCGGTGCATGAGCGCCATGCAGGCGGGGACGCAGATGGTGAAGCTCCGGGGCAGCTCCAAGGGCCTGGTCCGCTTCTATTTCCTGGACGAGCATCGCTCCTGCATCCGCTGGCGGCCCTCCCGCAAGAACGAGAAGGCCAAGAGTGAGTGGGGAGCTCGGGGGCGGGGTGAGGCGGGGGGGCC------------AGGCCAGC-ACCAGGGGGCAGGGGTCCC----TCCCAGAGCAGCCACTGCGCAGCTGAAGGGGAGTCTCCAGCT------------------------GG---------CTCCGGGCCTGGCAC-TTGGGCTCAGCTGGCTTCGGAGC-TCCA-GGGTGACCC-------TGG----------------------ACAAAGGGGTGGGGGAGGGCCCTGGCCCTGCTGC-CCACCTAGCAGGGCCCTCTGGTGCTTGGTG--GAGACTGAGCAGCTCCTGCGCCCTG---------------------TGA--TGGGCTGAGAGGCCGAAGGACCTTCATCATGCTGGGGAGGTGAGACCA-CTCTTGAACAGAGA--GAGGGACCCCGCCAGGCACCCTGCGGGGGGGACCTCG--G-GGCCCAACGCTGGCCCAGGCCGCCTGGGGTGCGAGCAGCTGGCAGGGTTGTG--GAGGCTGCAGGGCGCGCCTGGAGGGGCATGGCAGGGGTGTCCTGAGCTGTGAGGATTTGTGCAAGGACCAGGCGGTGGGGCCTGCGGGTCAGG------------------------------------------AGGAGACACAGAG-CAGTCCTCATA-GGTGGGAGAAGGGACCCTACCTCCCTTCCTCTGGCTTTGGCGACTGAAGAGACTCAGGCGTGCCCGGGCAGGGCCTCAGCCCCGTG-----------------------------------------------------------------------------------------------G------------TTGCTAGGGGTACTGCCGCCAC-----------------     
22 Ceratotherium_simum-NW_004454172.1-179785_180265          83.3%  37.5%    -----------------------------------------------------------CAGGCA-------------------GC-----------CCTGGGGGTCTGAGTTCAGCCCCTGGTGGGTGGGCAGGTGGGTGTATGG---GTGGTCTCT-GCACCCCCTTGAGCACACGGAGGTGGGTGCTGGGAGTGGGCTGTG---------GTGAGTGGTGGGGCTGCCGCAGCG----CTCACTGGCGCCCTGTCTGTCTGTCTGTCTCTGTGTTGGTCGTC------CATCTGCGTGCCGCGGTCCAGTGGAGCGATGTATGAGTGCCATGCAGGCAGGGACGCAGATGGTGAAGCTCCGCGGCAGCTCCAAGGGTCTGGTCCGCTTCTACTTCCTGGACGAGCACCGCTCCTGCATCCGCTGGCGGCCGTCACGCAAGAACGAGAAGGCCAAGAGTGAGTGGGGCAGCCCTGGGGGGCGGGCCGGAGCCCCAGGCCAGCC---------------CTCGGGGGACAGGGACCCC----TCCCAGAGCAGCTGCTGGACAGCGAGAGGGCAGCCAG-ACCCTGAGCCC--GACAAGTCTCCAGGTGG---------CTCTGGGCCTGGTGC-ACGGGTACAACTGGCCT-TGGGGGTCTG-CGGTGACCT-------CTGGACACGGGGTGGGGAGGGGGCAGGGCCCCATGCTTTTCGGGGCCCAGGCCCTGCTG-CAGCCTGGCAGAGCCCTCTGG-ACTCAGAG--GAGACCGAGCGGCCCCAGCGCCCAGCCCT--G--TTTGGGATGCTGGGA--TGGGCTGAGAGGCAAAAGGACCTTCAGTCTGGCTGGGAGACAAGACCT-CCTGGACACAGAGA--GAGACCAT-----GTCGGCTCTGAGGGGAGGGCTTTG--G-TGCCAAGTGTTGGCTCGGGCAGCCTGGGGCGTGAGCAGCTGC-GTGGGGGTGTGGAGGCTGCAGGGCCGCCTGGAG--------TGAGGACGGTCCTGAGCTGGGAGGATTTGTGCTGGGGACGCATGGCACAGTGTTGAT--CTGAGCGGGGCACTGCAGGGACGGGCTGGGG--ACTCTAGGGGTCAGGAAGGGGCATATAGAGTCCTCACGGGCGGGGAGAGGGGGTTTTACTGCTCCTCCTCTGGTTTGCCCACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
23 Rousettus_aegyptiacus-NW_023416284.1-175922_176095        74.3%  28.6%    -------------------------GGAGCT-----GGCTGGGCAGA-GCGCTTCCTCTCTGCCC-------------CTGG--CC-----------CCTG-------AACAGGGTCCCACATTGGCATGCGACCCAGGCCAGCGCCTGGGGGTCGCA-GGCAGCCCTGGGGGGGCCGACGCTGGAGC----------AGGCGG---------GGTGGGGAGCGGGCTGCAGCGGGCGGCGGG-GCGGCCACGGCGCTCACCGGCTCCCGTCCGCTG--TCTGTCTGTGCGTGCGTCTGTCGGCTCGCCCAGTGGAGCGGTGCATGAGCGCCATGCAGGCGGGGACCCAGATGGTGAAGCTGCGAGGCGGCTCCAAGGGCCTGGTGCGCTTCTACTTCCTGGACGAGCATCGCTCCTGCATCCGCTGGCGGCCCTCGCGCAAGAACGAGAAGGCCAAGAGTGAGTGGGGCGCCGGGGCGGGGGCC---------------CCCGCGCCGGGCG--TCTC-AGGGGGCTCCGGGCCTCGCGCGCGGGCTCGGCCGGCCCTGGAGTTCTGCGGGGACCTGTGCGCACAGGGCGG--GACGTGGCCGGGCCCGC---------TGCCGC--CTGCCGC-AG--------CTCCCT--GGGGCCCCGT-GC--------------------------TGGA--GGCGGGTGGGCTGAGGGGCAGGAGGCCCTTGC---GTCTGG-AGGGGAG-ATGGGACGTCCCC---------------------------------CAAC-AC--G--AGG---------GCG--GGACTTTGGTGCCGCGAGTTGGCCCAGGCAGCCTGGGTGTGAGAAGCT-GCCGTGGGGGGGCG------------AGGAGGGGTCCTGGGGGGAAGGTTCGT--G-CAGGGCATGGAGGGGCAGGGCCACTCTCTGAGGGG-ACATGGCGAGGACTGGGCCGTGAGTCCCAGGGGTCAGGAAGGGACACGTAAGAGCCCCAGAGACCA-----------------------------------------------------------------------------------------------------------------GGAGAAGGAAGGGGGTTTACTGCCCTTCCTCTGGCTTTGCTGCTAGGAGAGACCCAGGCGTGACTGGGTGGGCCCGAGCCCCACGGTGGCCGAGGG------------------------CACCATGGCCACCCTGGCCCAGGGCAGAGCCGCACCTGGGGCCCTCTGGGAGAGTGCCCTGG------------GGGAGGGGCTTGCCCTCGCCCCAGCGCGCCCGCTCGGTG     
24 Heterocephalus_glaber-NW_004624818.1-173411_173573        86.0%  34.5%    ---------------------------------G-AGGTCTGGGTGA-C-AGTTGCCCTGGGGCCGGG-C-------ATGGGGTGATG-----CTGGGCCTTGGCTGAATGGGCGGGAGCACAGCCCTGGGACCAGGTG------G---CTGTG-----GTCCCTGTCAGCAGGGGCGCCGAGTGAC-CTGGTGGCTGATCCCT---------------GGCCTCAG-TGCGCGGGCGGGGTGGCCCTCAGGCACCCTGGGTGCAGGCTGCTC------ACAGCCCCTCTGAGT-CGTCCGTCTGTGTCCAGTGGAGCGGTGCATGAGTGCCATGCAGGAGGGAACGCAGATGGTGAAGCTCCGCGGCAGTTCCAAGGGCCTGGTCCGCTTCTACTACCTGGATGAGCACCGCTCCTGCCTGCGCTGGAGGCCCTCACGCAAGAATGAGAAGGCCAAGAGTGAGTGGCCTTTTGGGGCTCCCCGGCTCTGGGCTGCGGGG--TGGGAGGGGTCAGCC--------------CAC--C----------ACGC----------------AGGACCCTGGGTG-GCCCCGGGCCATATGCTGGGGTGAGGG----------ATT---------------GAGAACCCAGCTGGGCACCCTGGGGTGGGCCTGGGTGCCAAGTG-TTGGCCCTGGCAG----CCACAGGGGACGCCGGGGGTCTGCAGGGGCCACTGAGCTGGA-CA---------GCGTTGGGCAGGGACAGAT--GGGCAGGGTTGGGGCAGAGGGCAAGGTGA--G--GCCCTGCAGCAGGGA--GAGACCCATG---AAGGT--TTGGCAGGCT---GGGAAAGGG----GC-ATTTCTGGCACCTTCTTTCCAT----GGGCATGGCCTG----------GGTC-------AAGCAGGGCCCAGCCCTGAAGTTGCCAAGGGCACTGCCACAGATC--CCAGGAGGGAGATCTCCCTGCTG--CA----GAGCCCAAGAGGCCCC-G--GG---AGA--AGGTCCCACAGCGGTGCAC----------TGGGCGGAG--CACAGCT-TGCTGGGTGGCATTGGCTCACCTGTCCCATCTGGCTGCCTCA------------G-------------GGTG-ACTG-----TCCCTTGGGCTGGGGGGAGCCAGAGGAGCCCCGGTGCCCAGTTGGGTGCATCGGCTCTGTGCTGGGCACCA-------------------------------------C-----------TCTGCCACAGAGCTGGCATTCTACAGGCGACAT-------------------------------------------------------     
25 Fukomys_damarensis-NW_022900935.1-173202_173383           88.3%  37.2%    ---------GGGCTGTGGGCCTCCAGTGCTTGTG-AAGTCTGGGTGA-C-AGTCCCCTTGGGCCCAGG-G-------GTGGGATAATG-----CGGGGCCTCAGCTGAGCAGGCCTCA---------------------------------ATT-----CCCCACCATTGGAGGGGTGGCGAGTGAC-CTGTGTGTCTGACCCT---------------CGGCCTCA-GTGGATGGGCAGGTGGCCCTCGGGCACATGTGGTGCAGGCTGCTC------ATGGCCCCGCTGTGTTGTCTGTTCTGTGTCCAGTGGAGCGGTGCATGAGTGCCATGCAGGAGGGGACGCAGATGGTGAAGCTCCGCGGCAGTTCCAAGGGCCTGGCCCGCTTCTACTACCTGGATGAGCATCGCTCCTGCCTGCGCTGGAGGCCCTCACGCAAAAACGAGAAGGCCAAGAGTGAGTGACCCATGGGGCTCCCTATTGCTCTGGGCTAGG-G--TGGGAGGGCCGGGCCCTTGCCCAGTTGCCCAC--C----------TGGCAGGTCCCTGGTCTCCAGGACAGCTGGGTG-GCCCTGGTCCAGATGCTGGGGTGGGGA----------TTGAGAACCCCAAACAGAGAGACCCCAGCTGGCACACTGAGTTGGGGCCTGGGTGCCGAGTG-TTGGCCCAGACAG----CCATGGGGGACGCCAAGGGTCTGTA--GGGCACTGAGCTGGA-CG---------GCACTGGGCAGGGGCAGAT--GAGCAGGATTGGGGCACAC------AGGG--G--GATCTGCAGCAGGGA--CAAACTAATG---AAATA--TTGGCAGGCT---GGGATAAGG----AC-ACTTCTGGTACCTTCTGGCTGT----GCCTGTGGACAGGACTGGCTGGCTGA-------AGCAGGGCCCCAGCTCTGCAGTTGCCAAAGGCAATGCCACAGACC--CAGGA-----GTGAGCCCTGTTG--CA----GAGCCCAGGAGGGCCA-T--GGGAGAAG--GGACCCACGGCGGGTACAC----------TGGATGGGG--CACAGCT-TGCTGGATGGCATTGGCTCACCTGTCCCTCAGGGTGCA---------------------------------------------TCCCTGGGCTGGGGAGAGGCGGAGGAGCCCCAGTGCCCAGTCTGGGGCATCTGCTCTGGACTGAGCATCC-------------------------------------C-----------AT--------------------------------------------------------------------------------------     
   clustal                                                                                                                                                                                                                                                                                                                                                                                         ******.**.** .** * . ******.*..** *  **.***** **.** ** ** .* ******** **.*  ******** *:*** ** **.** ** ***** .* ******.**** ** **.**.*. *****.*****.****** *