Reference sequence (1): Target
Identities normalised by aligned length.
Colored by: consensus/70%

                                                              cov    pid  1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .         .         .         .         :         .         .         .         .         6         .         .         .         .         :         .         .         .         .         7         .         .         .         .         :         .         .         .         .         8         .         .         .         .         :         .         .         .         .         9         .         .         .         .         :         .         .         .         .         0         .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .     ] 1516
 1 Target                                                  100.0% 100.0%    ------------------------------------------------------------------------------------------------------------CTG-CCACGTCTCTTGGCCCGGGGCACCCCCGGCTTCACGCTGCAGCTGCGGTTCTGTGTCTGCCTGAGTTTT------GGAGGGG---AGTGGGCGGTCCCTTTGGACCTCAGGGCAGGCAGGGCAGCCCCCGGCAGAGGCCTGTGTCAGGAAGGGATTAGCCAGGCCTCCACCCGCCTGGAC---AGTTGAGGATTCCAGCTCTGCTGCTGAGGAGGTCAGGGGGCC----TGGG--GTGCAGGAGCCTG-GGACCCA-------------------------CGTTGTGG----GGCTGGGGCCAGGCACTCTATGTGTGGCTCCTCTCAGAACCCCTGCCCAGGCAGATGGCGGCCTCCAA-GCCCTAACCCCAG-------CTGATGGGGGATCAGCTAGTGGCTGAGAGCTCAAGGGAGGGAGGGA----GGGAGCAGAGGCCCAGCCTTGGGGAGCTTCAAGGAGGGATGGGTG-AGA------GACGGGAGCACCCCCAGCTGGGGCCAGGC--CCAGGGTGAG-GGAACAGCAGGTGTGTCCCAGGCCAGGAGGCCTCTG----------------------------------------------------AGGT-----GCAGGAAGGAG-AACT-GGACCCCCTG-------GGTCAGAGTGGAAGCC---------------------------------------CGCAGCAGC-----------------------------C------CAGTATGAGGTGGG----CAGGGGCCCTGGGCCAGGGCTATGGCC---GTCT------GGTCTGT-----CTCCAGGCCCTCAGGCCACCT--CCTGG-------------CC-------------C---CTGC-------------------------------------------------------------------GCTGCCCCTTACACGGTGGCCTTC-C-CCGAGGCCCTGTCTTCCTGAGGACGCCCGGGACTCCAGCCCCTCTCCTCTCCCTGCAGCTCATGGCTCCCTAATCTAATTCCACGGCAGAGCCCAGAAACG--CCTGCTGACCTGCTTCCGCCGAGAGCAGCAG-------A-GCCTGTGACGGGGCCCCTGGTGGGGGCCTGGGTTGGCTCTGTGCTGACTGCATCTGATCTGGCTGGGTGTGGC---CCTGGTTGTCAGTGGTCAGCTGGAGACGCATGGCCATCTCC-TCAGGGACTGCCACCTCCCACGCCTGACC----------------------------------------TTGGCCCCGGGGCTCT-GCCAGGATGCCCAGCCCT-------GGCACCTCCCTGTCCTGGGCTCTGCAG-----------------     
 2 Callithrix_jacchus-NC_048389.1-180916_181907             98.8%  79.0%    -----------------------------------------------------------------------------------------------------------CCCT-CCCATGTCCCTGGCCTGGGGTGCCCCTGGCTTCACTCAGCAGCTGCGGTTGTGTGTCTGCCCGACTTCT------GGAGGGA---G-AGGGCAGTCACTGTGGTCCTCAGGGCAGGCGGGGCAGCCCCCATCGAGGCCATCCAGGA----AGGATTAGCTGGGCCTT-TCCTGCCCTGTC---AGCGGAGGATTAGGCCAGGGCTGCTGGGGA-GGTCGGGGGCC----TGGA--GTGCGGGAGCCTG-GGCCCCA-------------------------CATTGGGG----ATTTGGGGCCAGGCACTCAATCCTCGGCCCCTCTCAGAACCCCTGCTTAGGCGA--TGGGGCCTCTAA-GCCCCAACCCCAG-------CTGATGGGGGACCAGCTAGTGGCTGAGAGCTCAAGGGAGGGAGGGAGGGAGGCGGAAGAAGCCCAGCCTTGGGGTGCTTTGAGGAGGGGTGGGTG-AGA------GGCAGGAGCACCCCCAGCTGGGGCCAGGC--CCAGGATGAG-GGGAGAGCAGGTGCGTCCCAGGCCGGGAGGTCCCTG----------------------------------------------------AGGC-----GCATGAGGGAG-AACT-GGATGCCCCT-------GGTGGGAGTGGAAGCC---------------------------------------TGTAGTCTG-----------------------------GTGTGGCGAGGCATCAGTGGA----CCGGAGCCCTGGGCCAGGGCTGTGGCT---GTCT------GGTCTGT-----CTCCAGGCCCTCGGGCTGCCT--CCTGG-------------CC-------------C---CGGA-------------------------------------------------------------------GCTGCCCCTGACATGGTGGCCGTGCC-CCAAGGCCCTGTTTTTCTGAGGATGACCAGGACTCTAGCCTCTCTCGTCTCCCCAAGGCTCATGGCTCCCTAATCTAATTCCACAGCAGAGCCCAGAAACA--CCTGCTGACCTGCTTCCGCCAAGAGCAGCAG-------A-GCCTGTGAGCAGCCCC--TGGTGGGTCCTGGGTTGGCTCTGTGCTGAGTGCATCTCATCCGGCCAGGCACAGC---CCTGGTCATCCGTGGTCA-GTGCAGATGCACGGCCATCTCC-TCAGGGGCTGCCTCCTCCCATGCCTGACT----------------------------------------TTGGCCCCAGGGCTCT-GCCAGGATGCCCAGCCCT-------GGCACTTCCCTCTCCTGGGCTACACAGG----------------     
 3 Galeopterus_variegatus-NW_007727608.1-233204_233687      84.8%  45.0%    ---------------------------------------------------------------------------------------------------GGCACTCCCCTG-CAATGTCCTGCGGCCTGAGGCTCCCCTGGCTCCACTCAGCGGCTGCAGTTCTGTGTCCACCTGTCTCTTGCAGTGTCAGAGGTGGAGCGGGGAGTCACCTTGGTCCTCAGGGCAGTGGAGGGGTCACCTGCAGAGCCCTA--CATTGGGGTGGATTAGCTGGGCCTGCATCTGCCTGGTC---AGCGGAGGATTACGGCCGGGGGCAGCTGAGGAGCGGTCAGGGAGTCCAGG--CTGCAGGCACTCG-GGCCCTG-------------------------CACTGGGAGGGGCTGGAACCAGGCTCACTCAACCTGTACCCCCTCCCAGAACCCCTGCCCAGGCAGATGGGGCACCCAAGCCCCCCGCCAG----------CTG---------------ATGGCTGAGAGCTCGAGGGCAGGGCT----------------GGCCAGCCCTGGGGGCTCTGAGGAGATGGTGGG----AG------GCAGGAACGCCCCCAGGTTGGGGCTAGAC--CCGGGGTAGG-GACACAGCAGGTGTGTCCAGGGACAGGGAGGCTGCTGAAGGC-AGTGGAGGAGAGTTCATCAGGCTGGGCCCAGGAGCCCGCGGACCCGTGGC-A--CGGTGCCACGG-AGGAACATCGCGTGG-------GATAGGGGTGGCAGCGTTACCCATGCC----------------------CACG-GACAAGGGGTGCATGGCCCTGGACA--CAGA----GGGTGCGGGCCATCCTGTCTCATCCAGCCTTGGGGTCCTTGATGGCCCCTGC-GTC---CCCA------GTGCTTG-----AACCTGCCTCCTGGTCTCAGT--CCTGT-------------CCCGACGCTCTGTTGG---GCTT-------------------------------------------------------------------CCGGCGCCCCCCCCCCACGGGTGGGC-ACACTGTCAGGGGCTCCTGAGGACTCCCAGGACTCTTGCCCCTTTCCTGTCCCAGCAGCTACTGGCTCCTTAATCCAATTCTGCGGCACAAAACGTGGGGCCATTTGCTGACACCCTCCAGCGAACAAACGAGCCAAGGCCT-CCATGACCAAGGCTCCCAGCGGGCTCTGGGGTTTGGCTT-TAGTGGATTGTGTGGGACCCGGCCGGGCAGGGT---CAGCCTCAGACGCCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
 4 Propithecus_coquereli-NW_012152752.1-168803_169659       90.8%  46.6%    ----------------------------------------------------------------------------------------------------GCCGTGCCATG-GGGGTGTTTGCAGTCCAGGGCACCCCTGGCTTTACT-CCCCACTGCGGTTCTGTGTCCGTCCGTCCTTT------GGAGGGG---G--TGGGGGTCACCTTGGCCCTCAGGGCCGTGGGGGAGGCTCCGCGTCCTGCGTCAGGG-CGGATTAGCTGGG-C----CTCCCTCCGCCTGCTC---AGCGCAGGATCATGCCTGGGGTTGGGAGTGGGGGT-------------------GCAGGGGCCTG-GGCCCCA-------------------------CCTTGCAGGGCTGGGCCTGGC---------ACTCACTGTGCCCCTCTCAGAGCCCTGCTCAGGCAGGTGGGGGAGG-----------------------------------CACCAGCTGTGGCTGATGGCTCAAGGGACGG-AGGGGGCCGGGACA---------GCCGGGGGGCTTGGAGGGGATGAGTGGGAG-GCG------GGA-----GTGCCCAGACTGGGGCTGGGC--CCAGGGTGAG-GAA-GAGCAGGTGGATCCCGGGGCAGGGAGGTGCGGGCAGAG-AAGCAAAG---------ACGGGTCTTCCCGGGTGCCGGCCGCTGCCGGC-----GTTAGAGTGGC-GGCA-AGTGGCCCGG-------GGCCTCCAGACACGCA---------------------------------------TGAAGGAAGGGTCGGGCA--------AGG---------AC-GGCCGTGTAGCTTGGGGC----ACCGGGCCATAGGCCGCCCGTCCGTCC---CTAG------GTAATTG-----GACCCGCCTCT---TGGGGCT--TCTGG-------------GC-------------T---CCCC-------------------------------------------------------------------CTGCACAGTGGCCGTGCTGTCAGG-G-CCTGCACCCCATCTCCCTGAGGACTCCCAGGACTG-GGCCCCCTTCCTGTCCCTGCGGCTAATGGCTCCCTAATCTAATTCCATGCAGAAAGCGCAGAGCT-GCCCCCTGACCTGCGAACGGTCAGAGCCT------------CTGTGACAAAGGCCCCTAATTGGGTCTGGGGTTTGGCTTTGAGTTGATTACACGGGATCTGGCCGGGGGTGGT---CCTGTTCTCTGTGGCCAGCC--GCAATGCCCTGGCCATGAACGCGCGGCCCGCCGCCCCCGACCGCA--------------------------------------------GCG----CCCGCGGCT-CTCCAGCTGCCCAGCTTC-------CGGCTCCTCCCGTCCGTGTGGGGAGAGAGGGTTGAGAATCTC--     
 5 Otolemur_garnettii-NW_003852462.1-167029_167305          93.0%  50.6%    ---------------------------------------------------------------------------------------------------------------------TGCATGCAGCCTGGGGCACTCTGGCTTCACT-CGGCACCATGGTTCTGTGTCTAGCTGTCTTTT------GGAGAGG---A--TGGGGGTCACCTTGATTCTCAGGGCAGTGGGGAAACTTCCTGGCAGAGCCTTATGT-CAGGGCGGATTAG-CTGGGCTCTGTCAGCCTGGTC---AGTGCAGGGTTCTGGCCTAGGGCAGCTGAAGAGGG-------------------GCCTGGGCATCTGTATGCA-------------------------GCAGTCTGGGCTCCATGTTGCATGGGGCTGGGCCGGATGCTCATTCCCGAGCTCCTGCTCAGGCGGAGGGGGGCACCTAAGCTCTCCACCTCAG-------CTGATGGAAGCACCAGTTGT------TAGCTCTAAGGGAGGAGGGGCCTGGGGACA---------ATCTTGGGGGGCTTTGAAGAGGATGGATGG-GTG------GAAGGCAGGAGCGTCCCACGGGGCTAGGC--CCAGGTTGAG-GAA-GAACAGGGGCATCCAGAACAGG---GCCTGGGACAGA----GAAGCA---------GAGTGTCTTCCTGGGAACCAGGAGCTACTGGC-----TTTCGGGTATG-TGGAAAGTGGCTGTG-------GGCCCCCAGGGACATC---------------------------------------TGAAGGATATG---------------------------GTGCAGGCACTGGGTGGGGGG----GCCAGGCTGTGAGCCAGCCCTCTGTTC---CTAG------GTGTGTG-----CACTTGCCTCT---GGGATTT--CTGGG-------------CT-------------C---CACC-------------------------------------------------------------------CGCCTGGCTGGCTATGCTGGCAGGGC-CCTGCGCCCCATCTTCCCAAGTACTCCTGGGACTCTGGCCCCTTTCCTGTCCCAGCAGCTAATGGCTCCCTAATCTAATTCTGCCTG---------------CTGACCTCCTGTGAGCAGAGTCAGAGCTT------------CTGTGACAAAGGCTCCTTATTGGGTCTGGGGTTTGGCTTTGAGCTGATTACAGGGGATCTGGCCGGGTGTGGT---CCTGGTTCACTGTGGTCAGCCCAAGATGCCCTGCTATCTCC-TCATGGCCTGCCACCTCCCCAACCT--------------------------------------------TGCCCCCCCTGGCTAG-GCCAGGCTGCCTGGCCTC-------CAGCTCCTCCTGCCTGTGCAGAGAGGGGAGAGTGTGA-------     
 6 Microcebus_murinus-NC_033661.1-165600_166014             89.7%  47.4%    -----------------------------------------------------------------------TGGCC----AGACACCCGGTCTTGGCTCAGCTGTGCCCTG-GGGGTGTCTGTGGCCCGGGGTACCCCTGGCTTTACT-CCCCACCGAGGTTCCGTGTCCGACTGTCTTTT------GGAGGGG---A--TGGGGGTCACCTTGGCCACCAGGGCAGTGGGGGAGCCTCTGGG---------------GGATTGGCTGGG-C----CTCCCTCCACCCGGTC---AGCACAGGATCCTGCCTGGGGTCGGGAGAGCAGGG-------------------GCAGGAGGCTGAGCCCCCA-------------------------CCTTGCAGGGCTGGGCCCGGC---------ACTCTCTCCACGTACCTCAGAGCCCTGCTCAGGCAGGTGGGGGCACCTGAGCCCCCTAG------------CTGAGGGAGGCACCAGCTGTGGCTGACGGCTCAAGGGATGG-AGGGGCTGGGACAT---------C----------CTTGGGGGGCTCTGAGGGG-GCA------GGA-----GTGCCCAGACTGGGGCTGGGC--CCAGGGTGAG-GCA-GGGCAGGTGCGGCCCAGGGCAGGGAGGCT-GGGCAGAG-ACGCAGAG---------CAGGGTCTTCCCGGGAGCCA-GCAGCTGCGGC-----GTTAGAGTGGC-AGCG-AGTGGCCCGG-------GGCCTCCATACACGCG---------------------------------------TGAAGGAAGGGGCGGGGC--------GAG---------GA-GGGCATGTAGCTTGAGGC----ACCGAGCCATGGGACACCCCTCCGTCC---CTAG------GTGCGTG-----GACCTGCCTCT---CGGAGCT--TCTGG-------------GC-------------T---CCCC-------------------------------------------------------------------CTGCACAGTGGCCACGCCGTCAGG-G-CCTGCACCCCATCTTCCTGAGGACTCCCAGGGCTG-AGC-CCCTTCCTGTCCCGGCGGCTAATGGCTCCCTAATCTAATTCCTGGCAGAAAGCGCAGAGCC-GCCCGCTGACCTGTGA----ACAGAGCCT------------CTGTGACAAAGGCCCCTAATTGGGTCTGGGGTTTGGCTTTGAGTTGAATACTCGGGATCTGGCCGGGGGTAGT---CCTGGTTCCCTGGTCAGCCC--GCGATGCCCCGGCTGTTCACGCACGGCCTGCTATCCCCCCCAACC--------------------------------------------CCAGCCACCCCGGCCA-GCCCAGACGCCCAGCCTC-------TGGCTCCTCCCATCCGGTGC------------------------     
 7 Ceratotherium_simum-NW_004454172.1-175719_176031         83.6%  37.3%    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTGTCCCATGGAGTGTCAGAGGTGGG-GTCAGGGTCACCTGGGTCCTCCGGGTAGTGGAGGGGCCTCCCTAGCGGAGCCCTGCGTCAGGCCAGATTAGCTGGACCTTCGTCCGCCTGGCT---GGGGGAAGATTACAGCCCAGGGCAGCTGAGGAGGACTCAGAGAGTCTG----GGTGCGGGGCC-------------------------------------------------------GGGCCCATGCAGTCTGTGCCCCTCCTAGAAGC-CCTGCCCGGGCA---TATGGGGCATCCACGTGCCCTGACTGATGGCAGGAGACGGTTGACCCACTAGTGGCTGAGAGCCCAAGGGCATGATTTGAGGATGGCAGGGGGAGGCTT--------------TGGGAGGTGGGTGG----GAGGC--AAGGGCAGCCCCCCAAACTGGGGTCC---GGTGCAGGGGAG-GAAAGAGCAGGTGTGA-CCAGTGTAACCTGGGTTGG----A------------------GGAGCCGCGTGCTTTGGATAGGAAGGAATG-GCCCAGAGTTGTGGAGGA-CTGGCTGATGGAATG-------GGGGGCAATGACCACAGCAGGCAAGGA-----------------------GG--GGTGAGTGTCACAGGGCCCAGGACA--CGA------GGTGTGGACCATGGGGCCTTGTCCAG--GCCGATCCCTCAGACCCGCCCCCGGCCCCGCTCT------GGTCCTGATGC-TCCCCAGCTTTCTGGTTCCCC--TTTCC-------------CCAGACCCCCTGCGCA---AGCG-------------------------------------------------------------------G-------CGATGCTGTCAGCGGCTC-CAGCAGCCCCGTCTTCCTGAGGATGCCCGGGACTCGTTCCCCTTTCCTATCCTAGAGGCTGATGGCTTCCTAGTCTAATTCCATGCAGAACCGTCTCCTGCAAGGGACCGAGTCAG--------------------TG------------CCTTTTTGGCAAAGGGTTCTGGCATTTGGCTTTGAGTCGATTACCTTGGATCTAGCTAGGTGGGGC---CCTGGTTATCTGTGGTCAG------GCCAGGATGCCCATCACTATCTCCTCACAGCCTGCAGCCTCCC----------------ACCCTTGCAAACCTTGGACTTAGCAGCTGTACCAGGCTGTTTGGCCTCTGGTGCCTCTTGTC------CTCGGCTCTGTGCCCCTGGCC------------------------     
 8 Lemur_catta-NC_059130.1-167518_167726                    82.6%  38.5%    TGCGTGGGGCGGCCGAGCCGCCTGGGCTCAGGGCTGTTGGCAGCTCAGGCCGCGTGGCCAGCGCCCTGGGCGCGGC----GTCTGCCTGGCCTTGGCACAGCTGTGCCCTG-GGGGTATCCATGGCCCGGGCCACCCCTGGCTTTACT-CCCCACCGCGGTTCTGTGTCCACCTGTCTTTT------GGAGGGG---G--CGGGGGTCACCTTGGCCCTCAGGGCCGTGGGGGAGCCTCCGCGTCCTGCTTTCTGG-GTCAGGGCAGA-------------------------------------------------------------------------------------------------TGA-------------------------GCTGGAGCCTGGGCCCGGCGC---------TCGCTCTGTGCCCCTCTCAGAGTCCTGCTCAGGCAGGTGGGGGCACCTGAGCCCCCCAG------------CCGAGGGAGGCACCAGCTGTGGCTGACGGCTCAAGAGACGG-AGGGGCCGGGGACA---------GCCTTGGGGGGCTTTGGTGGGG-GTGGGAG-GCG------GCG-----TGCCCCAGACTGGGGCTGGGC--CCGGGGTGAG-GAA-GGGCAGGGG-----------CTTTCCGCCCGGGCAGGG-AAGCAGAG---------CCGCATCTTCCTGGGCGCCGCCAGCTGCCGGC-----TTTAGAGTGGC-AGCG-AGTGGCCTGG-------GGCCTCCAGACAGGTG---------------------------------------AGAAGGAAGGGGCCGGGC--------GAG---------GAGGGCCGTGTAGCTTGGGGC----ACCGGGCTGTGGG--CCGCCCCCGTCC---CTAG------GTTTGTG-----GACCCGCCTCT---TGGGGCT--TTTGG-------------G--------------C---TCCC-------------------------------------------------------------------CTGCACGGAGGCTGTGCTGTCGGG-G-CCTGCACCCCGTCTTCCTCAGGACTCCCAGGACTG-GGCCCCCTTCCTGTCCCAGCGGCTAATGGCCCCTAATCTAAT-TCCACGCA---------------------GGAAGCATGAACAGTCAAAGCCT------------CTGTGACAAAGGCTCCTCACTGGGTCTGGGGTTTGGCTTTGAGTTGGTCACGTGGGACCTGGCCAGGGGTGGC---CCTGGCTCTCTGCGGTCAGCCCGTAACTTCCCGGCTGTCCATGCACGGCCTGCCGCCCCCCAACCTC--------------------------------------------AGC----GCCCCCCCA-GCCCAGCTGCCCAGCCCC-------CGGCTCCTCCCGTCCCTGTTGGGAG-------------------     
 9 Carlito_syrichta-NW_007256000.1-134244_134531            85.8%  39.1%    -----------------------------------------------------------------------------------------CGCCCAGGCCAGGCACCCCCTG-CAGCATTCTGTGG----CCTGGGCACCAGCTTTGCTGAACAGCTGCAGCTCTGTGTCCACCCGTCTTGTAGAAGAG------------GTGGGGTCACCTTGGTCCTCAGGGTGGCGGGCAGCCTTGTGGCCGAGCCCTG--CATCAGGGTGGATTAGCTGGGCCTTCCACCACCCA-T----CACTGAGGATTATGGCCGGGGCT-GCCGAGGAGGGGTCAGGGAGTTCTGG--GTGCAGGGGGCTG----------------------------------------------------GACCCGCACTCAATCTGGG-CCCCTCCAAGAAGTCCTGCCGGGGAG---ACGGGCCAACCAAGCCCCCATCCCAG-------CTGATGGGGGAACCGCTGGTGGCTGAGAGCCGGTGGGATGGGGAAAGAGCA-----------------CGGTGTTCCTGGAAGGAGGCCC--------G------GGAGGGAAGCCCCTGGGTAGGGAGGGAGAATCTAC-------------------------------------------------------------------CTTCTTGTGTGCAGGAACCTTTGGCT-----------GTTGGGGAGGA-AGTGAAGACCCCATG-------TGG-----TGGGAACC----------------------------------------------------------------------------------------TGATGGGACC----GGGGACTGGCTGGGGACCCATCTGTCT---CCAG------GTACTCG-----GACCCGCCTCCTGCCCTGGCT--CGGGC-------------CCTGGGC-TCCTTGGG---TTTG-------------------------------------------------------------------GGGCTCTCC-----TACCCAGGTGTC-CACCTGCACTCACCTTCCTGGGACTCCCAGGTGT--CTTCCCTGTCCCCGCAGGCAACTTGATGGTTCCCTAATCTAACTCCATGGTAGAGAGTGTCGGGCCTCCTGCTGCCCTTATGCCGATGGAAGCAGAGC-------T-TGTGACACACGGCCCTGGCCAGGCACTGGAGTTTGGCTTTGAGTTGATGACACCAATCCTGTGGGTGTAG--C---CCTGGGTCTCTGTGGCCAGCCAGAGATACTCAGCCGTCTCC-TCATGGCCGGCTGCCTCCTATTCCAGCCTTGGCTCCGGCACCGCCCTTCCCAGGCTCTGCAGGGGGAGGAGGCTCCCTGCCCCAG-ACCCTGGTGACTGTCTCCTGGGGCCAGCACAGCCTAGGGCGTGAGTGGGTGAGGGCTGGGGGCACCCGA     
10 Tupaia_chinensis-NW_006198262.1-176008_176111            88.4%  40.5%    ------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGTTCTGTGTCCATCTGTCTTGGAGTGTTAGAGGTG---G-GGTGGGGTCACCTTGGTCCAGAGGGCAGCCAAGGGGCCTCACTGGCAGAGCCCTGAATCAGGGCAGATTAG-CTGGCTTTCATCTGCCTGGTA---AGCGGAAGATTATGGCCTGGGACAACTGAAGAGGGGA--GTC----GAGG--GTGCAGGGGTCTG-GACCTCA-------------------------TGTTGGGGGGCTGT--GGCTAGGCCTACTCGATCTGTGCTCTGTCCCAGAACCCCTGCCCTGGCTAGAGGGAGACTAGTTAGTGG----------------CTGAGA--GCCGGAAGGCAT-------GGCCCAAGGCAGTG--GGGGTGGGGGCAGGGGCAGCCAGCCCTGGGAAGCTTTGAGGAAGGGAGAGAG-GAT------GGTGGGAGGCCACCACACAGGGCAGGGACATCCAGGGACAT-GGA-GACCT---------------CT--------GAGGGCAG-AGGGAGAA---------CTTGCTCTTTCCGGGTGTGAGGAGTCATGGGC-----TTCCAAGCGGG-AAGAGAGTAGCTGGC-------TTTGTGGGGGGCCCTCTGACGGAA-------------------------------TAAGGCATAGCTCGCTTGTGCACA--GGG--------CAGGGGACATGTGGCTCCGGGCATGGAGCATGGGGTCCCCAGGGCCAGTGTCC---CCAG------GTACTTG-----GACTCGCCTCCTGACCTAGCT--TTGGC-------------CC-------------T---GATG-------------------------------------------------------------------CTCCCCTGGGGATGCCCTTACACGGG-TGGCAGTGCTGTCTTCTGGAGGACTCCCAGGACTC-CTGCCCTTTCCTGTCTCTGTGGCTAATGGCACCCTAATTCAATTCCATGGCAGAAAGTGCAGAGCCGCCTGCTGGCCCCCG--------------------------CTGTACAACTGCTCCTAATTGGGTTCTGGGGTCTGGCTTTGAGTCGATTACAGGGGATCTGGCCAGGCTTCCT---GTTGTCCAGGGCATGTTGATGGTGAATAGGGAGGGATGGGGGGCCCAGGGGCCCAGTGGCCAAAGGAGTCCC-----CAGTA----------------------GGGTTGTTGCAGCTATGGGGCCA-GCTCAGCTGGCAGGGGCTC----CCAGGGCCAACCTGTCCTTTAATGGGGGCC----------------     
11 Manis_pentadactyla-NW_023457939.1-170913_171010          80.6%  29.0%    -------------------------------------------GCCCAGCATGCTTGGCAGCACCAAGGGGATGTTAC----GGTTACCCCCAGGGCCCAG-------------CGCTCCATGGGGTCCTGCGGCCCCCGGCTCTGCACCGCCGCTGCAGTTCTGTGCCCC---GGCTCCTGGAGTACCAGAAGCGACATG-G---------GGGCCACCTGGGCAGCAGAGGCGCCTTGCTGGCAGAGCCCCAAGTCAGGCCAGATTAGCTGGACCTTCACCTGCCCGGCC---AGTGGAGGATTAAGGCCTGGGGCAGCTGAGGAGGGCCTGGCC-CTCCCGC--CTGT--------------------------------------------------------------------------------GCTCCTCGCAGAACCCCTGCCCAGGGAGACGGAGGTGTCCAAG-CCCCCCTGGCTGATGGCAGGAGACCCTTTATCAGCTAGTGGCTTAGAGCTCAAGGATGCGGCCTGAGGGGCGGAGGGGCGGGCTC------AGTGCGCTGGGTCCACGCTC-------------CGGGCGGAGGCTACCAGCTGGGCTCTGCCATTTGT----CT-TTGAGTCAATTA-----CACGGATCTGGTGGGGTGG-------------------------GGCCC-CAGTTCTCAGACCGGCCGGGGTGC-CCACCCTGCCC--GAC-C----TTGGACCCCAGTGCTGTGACAGGCTGCCGGGC----------------------------------CTCTTGGGCCTCCTGTCCTGCATCTGTGCG--TGGAAGGGGAGGCTGACAGCTGCTGCCTCAGCA---------------CAGCCCAGGAGTGGAGGGGTTTA------TGGCAAGGTAG-ACA-GAGCTGCCCTGCCTGCC--CGGGA-------------CACAGGCA-------C---CCGT-------------------------------------------------------------------TCTGGT----CCTGTGGTGGGGCACAGGGTGGGCTGGGGGATCCTGGGCC-CCATGGCAGAAGGACCTTGGTGTCC------------CTGG-GACCAGGTCCCAGTCCTCACTGCCCACTGGCCATG---ACCATGGGGTTCTG----CTGCTCAGGCCTCATGCCATCCTGCC-TGCCAGGCTGGCCTGCCCTGTGGCCT--------GCAACGCCCAGCGCTCCTGGGCTGTGAGA---GGCAGCGTGTCGCCCTCTCTGTC----TCTCCTGCTGGCCCA----TCACTCTTCCTCATGCCCCAGAGCTGCCCAGGGTGATGTTG------------------G-----------CTCCTT----------CTGAGCTGCCTG--------------------------------------------------------     
12 Equus_przewalskii-NW_007674960.1-178992_179170           83.9%  38.0%    ----------------------------------------------------------------------------------------------------------------------------------------------------------CTGCGGTTCTGCAGCCACCTGTGTCACGCAGTGTCGGAGGCGGG-GAAGGGGTCACCCAGGTCCTCTGGGCAGAAGAGGGGTCTCGCCGGCAGAGCCCTGCATCAGGCCAGATTAGCCAGACCTTCGTCTGCCTGGCC---AGGGGAGGATTATAGCCCGGGTAGTG-GAGGAGGACTCAGAGT-CCGG----GTGCAGGGGCC-------------------------------------------------------GGGCCCACACAGTCTGTGTCCCTCCCAGGAGT-CCTGCCCAGGCA---GATGGAGCCTCCACACGCCCTGGCTGATCAGCTGGT-----------------GGCTGAGAGCCCAAGGGCACGACCCAAGGATGGCAGGGGCAGGCCCGCTCGGGGGCCTTGGCGGGGGTGGGCAG--GAGGTGA--GAGCACCACCGCCCAGACTGAGGCCA---GGTGAGGGAGAG-AAAAGAGCAGGTGTGACCAGGTGTAACCTGGGTTCG----A------------------GGAGCTGCGGGCTTTGGGCAGCAGGGAATG-GCCCAGTGTTGTGGAGGG-ACGACTGATGGAATG-------GGGGGCAGTGACCACAGCAGGCGAGGT-----------------------GGT-GGGGAGTGTCACCGGGCCCAGGACA--CCA------GGTGTGGACCACTGGGCCTCGTCCAG--GCTGATCCCTTGGGCCTGCC----------CTCT------GGTCCAGATGC-TCCCCGGCTTTCTGGTTCCCC--TCCTC-------------TCGGACCCCCGGTGCA---GACA-------------------------------------------------------------------GCAGATGGCGATGCT-GTCAGGGCTC-CGGCAGCCCTGTCTTCCTGGGGATGCCTGGGACTCGT-CCCCTTTCCCACCCCAGAGGCTGAGGGCTCCCTGGTCCGATTCCACGCAGAACTGCCTCCAGCAAG-GGATGAGTCAG--------------------TG------------CCTCTTTGGCAAACGGCTCTGGCATTTGGCTTTGAGTCGATTACTTTGGATCCGGCCGGGTGTTCC---C-TGGTTCTCTGTGGTCAGCCCAGAACCAGGATGCGCGTTGCTATCTCCTCGGGGCCTGTCACCTCCC----------------ACCCTTGCCAACCTTAGACACAGCAGCTGTTCCAGCCTGCCCAGCCTCTGGCTCTCCTGTCC------TTGGCTC--------------------------------------     
13 Ictidomys_tridecemlineatus-NW_024405058.1-165762_165950  74.8%  34.7%    ----------------------------------------------------------------------------------------------------------CCCTG-TGACGTC-CCCAG-----CTTGGGACACTGGCTCATTAGCAGCTGCAGGTGTGTTCCTCT--GTTCCTTCCCGAGTCAGAGGTGGG--TGAGGGTCACC-TGGTCCCCAGGGCAGCAAAGGG-AGCCTCGGGCAGAGCCATTCATCAGG-CGGATTAGCTGGGCCTTCCC-----TCCTGGTCAGAGGAGGATTACAGCCTGCGGCTGCTGAGGAGGGGGCAGGA-GTCTGGG--GTGCAGGGGCTTCTTCCCTGCTCCCCGTAATAGAAACAGTCCCCGCAACAGTGTGGGGCTGGGGCCAGGCCCACTCCCTCTGGGCC-CCTCCCAGAGCCC-CATCCAGGCACCCACATCCCTCCCTGGTCACAGTGG----------GAG-----------GCCAGTGGGTGACTTGAGGAAGGAGGGCAGGGGAAGG--AG----TGCGCCGCCTGGGGGACAGGCCC-GCCAGGGGA-------------GAGCAGGTGTGTCCAGGGGAGA-----GCAGGTGTGTCCAG-GGGAGAGCAGGTGTGTCCAGGGGAGAGCAGGTGTGTTGGGGTGGGGAA-CCCCAGGGCAGAGGGGAGCAGGTGTGTCGGGGCCCCAG-GGC--------AGAGAGGAG--------------CT----GGGGAGCCCCAGGGCAGAGGGGAGCAGCTGTTCTTGGATTCTGGGAGCTGGTGGGCTGTGCGGGACGTGCGTGGCCTGGCCACACGGAGAGACGGTGGGAGCAGGGCAGCGGGGAAC---CGTGGTGGCCTCTCCCCATGCCCAGGGCTGAGGAGTGTGGTGGCCCTGGAAC-ACCACGGGTGTGGGCCTCGCCCTCTTGCCCAGCCTTGGTGTCCAGAGGCCCTGGCATCCCCAGAGCTTGGCCTGCTTCCTCTCC-----------------------------------------------CCAGGTGGCCATGCTGTCGGGGGCT--CCTGCCGCTTGTCTTTCCGGGG--ACTCTGG-GGCCATGCCCCTTCCTGTCCCAGTGGCTGAAGGTTCCCTAATCCAATTCAAGGCAGAAAGGGCAGGCTG---CTGCTGACCTCCAG---CCAGCAGATGAGG--TAGGGC-CTCTGGCCAGGGCTCCTAATTGGAGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
14 Heterocephalus_glaber-NW_004624818.1-170830_171030       79.2%  29.3%    -----------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGACCGGGCCGTGTCCTCTGGCCATGCTGGTCTCAGGGTGG---------CACAGCTGCCCAGGCTGGGCACTCCCTTGT----GATGTCCT---------------------------------------------------------------TGTCTGGTGCATTGCCTCACTTGGCCCTGCCCACTGGCCTGTGTCCACCTGTCCCTGAATGTCAGAGTGGGTGGGCTCACCTTG---------GCCCCAAGGCAGTGGGGGGACTCCCTGCAGAGCCGTGCATGGGGTGGATTAGCTGGGCCTC----CACCTGC----------CTG--------GTCAGCAGAGGATTATGGCCTGGCAC------TGCCGAGGAGGAGTCAAGG--GGCCTGGGGGTGGGGGCTACACCTGTGCCCCTCCCAG-GCCCCCCAGGCCCCTGGCCCCTCCCTGGGTGAATAGTGAGACAGGGTAGGGGCAAGGGTGGCTG-CCCTGGGG--------------------------------GGCCTTGTGGGGGTGGGGCAGGAG----CGCCCCTAGGCTGGGCC--CA---AGCCAGGGCACC---CTGCGGGCAGAGG-GGAACTGAGGCTTCCTGACCCAGTCTTCCGTGGGCTCC------GAGCAGGAAGTGAGTGCCCTGACTGTGGGGAGG--GACACT-----GATGC-CACGGGGCA---GACAAGGAGGCTGCGGCCTCTCACCCAGCCT-CG------GGTCCTTGGTGGCCCCAGTGTCTCCTGGTACTT--GGACC-------------TGTGTC--------CC--------------------------------------GGCCTGGCTGCCTGGAGC----------------C-CCTGGGGTTCACACACGGGGAT---------TCTAGGGGGCTCCCAGGGACTCTCAGGACTG-CAGCCCCTTCCTGTCCTGGAGGCGAAAGCGTCCCTAATCTGATTCGAGCAGAGGGGAGGCTGC-----CTGCTGACCTCCAG---CTGGAAAACGAGG---CAGGGCCTCT-ACCAGGGCCCCTAATTAGGTTCTGGGCTTGGCTTTGAGCTGATTATATCCGATCTGGCCTGGTGGGTC---GTGGTTCTCTGTGGCCAGGGTTCCTGTTGCCAGGGATGCAG-GGATGGCAGGCCTGGGATGACAGGGCGGG-----CTTGGGCGAGAGCAC-C------------------AAACATCCTCATCCCAGTGGTGCTTGGCT-GGGCAT-----GTGGTCAGCAC----------------------------------     
15 Vulpes_vulpes-NW_020356486.1-180151_180235               84.6%  34.4%    --------------------------------------------------------------------------------------------GAG-CCAGGAGCTCCCCCATGGTGTCCTACAGCCCTCGG--GCACCCCACCTTGCACAGGGGCCACAGTTCTGTGTCCACCTGCCTCTTGGAGTATCCGAGGTACG-GT-GGGGTCACCCTCTGCTTCCGGGCAGCACAGGGGCTTCACTGGCAGAGTCATGCATCAAGCTGGCTTGACTGGACCTTCCTCCACT---TGATCAGCAGAGGACCATGCCCTGGGTTGGCTGAGGAGGACTT--GGAGTCTGGG--GTGCAGGAGCT-------------------------------------------------------GGGCCCACTCAATCTGTGACCCCAGCTGCAGCCCCTACCCAGGCAGA-TGGGGCCCCCAA-GCCCCCCTGGCTGATGGCAGGAGACCGTTGATCAGCTAGTGGCTGAGAGCCCAAGGGCATGACCTGAGGATGGCAGGGTGTGGCT-GGCTGGGAGAGTTTTTCAGGGGATGGGAG-GGGAGAACATGCCCCCCCCCCCCCCAGTGGAGCCAGCCCTGGGGGAGGAA-AGAGGAGCAGGTGTGATCAGGTGTGAGCTGGATTTG----A------------------GGAGCTTTCTCCTTTGAGGCAGGAGGGAATGGCCCAGCGTCGGGGAGGG-ACAGCTGATGGGG---------GG-CA-GTGACCCAGGACAAGCAGG-T-----------------------GGG----GAGGTGGGGACCACCT-----------------------------------------------------------------------CGGACCCG------GGTCCTGATGC-TCCCTGCCGGTTTCCGGTCCC--CCTGT-------------CCTGCTCTGACTCTCCCCGCTCC-------------------------------------------------------------------CTCCCT-----------------------CATCACGCCAAGGCTGTCAGGGCTCCCAGGACCCACAGCCTCTCCCATTCCAGAGGCTGAGAGCTTCCTAGTCCAATTCCACACAACGCTCCTCCTG-CAAGGGACCGAGTCAG--------------------TGCCAC-TCTGGCAAAGGCTTTTAATTGGGTTCTGGCATTTGACTTTGAGTCGATTATGTTGGATCTGACCAGGTGGAGC---CCTGGTCACCTCCTGTGACCAGCTCTGGAAATCTGGGCCTGGCTTCTATCTGTGCTGGGGACAGAGGG-----------------------------GTGATGGTTCCTGTCTCAGCACAGCCCATT---------GAGGACGGGG------CAGGGGCC-------------------------------------     
16 Hipposideros_armiger-NW_017731634.1-164686_164789        76.6%  29.1%    ----------------------------------GCTTGGCAGTCACCTGGGATGTGGGGGCACTGTGAGGGCGACAGACATAGCACCCCCCAAGGCTGGATGCTCCCCCA-CAGCGTCCGGTGCCCCTGGAGCACCCCGAATTTGCACAGCACCTACAATCCTGCATCCACCTGTCGCATGGGGTGTCAGAGGCGGGGTG-G-------------GGCTCACTTAGGTCCT---GTTCGCCGGCAGAGCCCTGAGTCAGGCCAGATTAGCTGGACCTTCGCCTGCCTGGTC---CGTGAAGGATTACGGCCTGGGGCAGCCGAGGGGAAGTGCCCC--------------------------------------------------------------------------------------------------ATC-CCTGAAACCTTCCCAGGCGCAGGGGGGCATCTAG--GTTCCCTGGCTAATGGCAGGTGACCACTGATCAGCTAATGGCTGAGAGCCCAAGGAGGGCAAGGAGTGGC--------CGGCTTG------GGAGCTTTGGAGGGTGGGAG-------------GCGAGAGCACCCCCAGACTGGGGCCAGGTCCAGGG----AA-GGAAGGCACAG--------------ACCTGGGTTGG----A------------------GGAGTCATGGGCTGTTGGGTAGGAGGGA--GGTCCAGTGTCGTGGCGGG-ACGGCTGCTGGAATGGGGCAATGACCACAGGACCAGC---AGGAGAGGC----------------------GGTCTGGGAGTGT-CCCCTGGTCCAAGGCG--CTGA----GAGCATGGGCCACTAAGCCTCGTCC---------------AGGCCGGCCCCCGGACCG---------------------------CAGGGTTTCTGGTTCCC--CTCCT-------------CCAGCTCC-------C---CAGT-------------------------------------------------------------------GCAGGCGGAGACACTGTCAGGGGCTCCAG--CAGCCCGTCTTCCTGAGGACGCCCAGGCCTGGCTCCCAGAGGCTA------------ATGG-CTTCTAATCCAATCCCACAATCCCA-------CGA---GGAAAGGCCTTTTG----CGAGGGGCCGGTCACAGCCTCTTTGGCAAAGGCTGTGAACTGGGCTCTGCC--------------------CAGGCCCTGAGTTGATGACGTCAGCCCAGCGTGCCCATCGCTATCTCCTCAAGCT-------TC----CGCCTCCCACCCTCCCCGACCTTGGACCCCAGTGGCTGTACCAGGCTGCCCAGCCTTGGG-----------CACCTGCAGTCCCCAGCTCTGTGGCCTGGGCCC---------------------------------------------------     
17 Urocitellus_parryii-NW_020540697.1-272258_272392         72.4%  32.2%    ---------------------------------------------------------------------------------------------------------CCCCTG-TGACGTC-CCCAG-----CTTGAGACACTGGCTCATTAGCAGCTGCAGGTGTATTCATCT--GTTCCTTCCCTAGTCAGAGGTGGG--TGAGGGTCACC-TGGTCCCCAGGGCAGCGAAGGG-AGCCTCGGGCAGAGCCATTCATCAGG-CGGATTAGCTGGGCCTTCCC-----TCCTGGTCAGAGGAGGATTACAGCCTGGGGCTGCTGAGGAGGGGGCAGGA-GAATGGG--GTGCAGGGGCTTCTTCCCTGCTCCCTGTAATGGAAACAGTCCCGGCAACAGTGTGGGGCTGGGGCCGGGCCCACTCACTCTGGGCCCCCTCCCAGAGCYC-CATCCAGGCGCCCACGTCCCTCCYTGGTCACAGAGG----------GAG-----------GCCAGTGGGTGACTTGAGGAAGGAGGGCAGGGGAAGG--AG----CGCTGTCCCCTGGGGGACG---------------------------------------------------------GGCCCGGCCAG-GGGAGAGCAGGTGTGTCCAGGGGAGAGCAGGTGTGTCRGGGCGGGGAG-CCCCAGGGCAGAGGGGAGCAGGTGTGTCRGGGCG----------------------------------------------GGGAGCCCCAGGGCAGAGGGRAGCAGCTGGTCTTGGATTCCCGGAGCTGGTGGGCTGTGC-----------------------GGGAGAGACGGTGGGAGCAGGGCAGCCGGGAAC---CGCGGTGGCTTCTCCCCAAGCCCAGGGCCGAGGAGTGTGGTGGCCCTGGAAC-ACCACGGGTATGGGCCTCGCCCTCCTGCCCAGCCTTGGTGTCCAGAGGCCCTGGCATCCCCAGAGCTTGGCCTGCTTCCTCTCCCTGGCTCTAGTCCTACTGCTCCCTGGGGGTTC-CAGGCTCCCCCTCCCCAGGTGGCCATGCTGTCKGGGGCT--CCTGCCGCTTGTCTTTCCGGGG--ACTCTGGGGCTCATGCCCCTTCCTGTCCCAGTGGCTGAAGGTTCCCTGATCCAATTCAAGGCAGAAAGGGCAGGCTG---CTGCTGACCTCCAG---CCAGCAGATGAGG--TAGGGC-CTCTGGCCAGGGCTCCTAATTGGAGTCTGGGTTTGGCTTTGAGTCGATTATATCGGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
18 Marmota_monax-NW_025724459.1-165333_165467               70.8%  27.7%    --------------------------------------------------------------------------------------------CAGGGCTGGGACTCCCCTG-TGACGTC-CCCAG-----CTTGGGACACTGGCTCACTAGCAGC-------------TGCA--GTTCCTTCCAGAGTCAGAGGTGGG--TGAGGGTCACC-TGGTCCCCAGGGCAGCGAAGGG-AGCCTTGGGCAGAGCCATTCATCAGG-CGGATTAGCTGGGCCTTCCC-----TCCTGGTCAGAGGAGGATTACAGCCTGGGGCTGCTGAGGAGGTGGCAGGA-GTCTGGG--GTGCCGGGGCTTCTTCCCTGCTCCCTGTAATAGAAACAGTCCCGGCAACAGTGTGGGGCTGGGGCCAGGCCCACTCACTCTGGGACCCCTCCCAGAGCCCCTGTCCAGGCGCCCACGTCCCTCCCTGGTCACAGTGG----------GAG-----------GCCAGTGGGTGACTTGAGGAAGGAGGGCAGGGGAAGG--AG----TGCTGCCGCCTGGGATGGGCCCAGGCCAGGGGA-------------GAGCAGGTGTGTCGGGGTGGGG-----GAGCCCCAGGCCAG-GGGAGAGCAGGTGTGTCGG--------------------GGTGGGGGAGCCCCAGGCCAGGGGAGAGCAGGTGTGTCGGGGTGGGGG-AGCCCCAGGCCAGGGGAGAGCAGGTGTGTCGGGGTG----GGGGAGCCCCAGGCCAGGGGAGAGCAGGTGTGTCGGGGTGG-GGGAGCCCCAGGCCAG--------------------------GGGAGAGCAGGTGT-----------------GT---CGGGGTGGGGGAGCCCCAGGCCAGGGGAGAGCAGGTGTGTTGGGGCGGGGAG-CCCCAGGGCAGAGGGGAGCAGGTGTGTCGGGGTGGGGGAGCCCCAGGGCAGAGGGGAGCAGGTGTGTCAGGGTGGGGG-AGCCCCAGGCCAGGGGAGAGCAGGTGTGTCGGGGTGG-GGGAGC-CCCAGGCCAGGGGAGAGCAGGTGTGTCGGGGT--GGGGGAGC--------CCCAGG--GCAGAGGGGAGCAGGTGTGTCGGGGTGGGGGAGCCCCAGGGT-TAGGGTT---------------AGGGTTAGGGTT---AGGGT----TAGGG---TTAGGGGTTAGGG--TTAGGG-TTAGGGTTAGGGTTAGGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------     
19 Physeter_catodon-NC_041216.1-181043_181138               78.8%  32.0%    -----------------------------------------------------------TGCACCATGCGGGTG-----ACACAGCCACCCCTGGGAGGGGTGCTCCCCGC-CAGCGTCCTGCAGCCCTGGGGCGTCCCCGTCTTGCACAGCAGCTGTGGTTCTGCGCCCACCTGACTCCTGGAGCGTCAGAGGAGGAGCG-G-------------GGGCTCCCCTGGGCAGTGGCCTCGCCAGCAGAGCCCTGCCTGAGG-CAGATT-AGCTGGACCTCATCTGCCTGGTC---AGTGGAGGATTATGGCCTGGGGCAGCCGTGGAGAC--AGGGA-CTCTGGG--ATGCAG----------------------------------------------------------------------GGGCCGGGCCCCCTCCCAGAACCCCTGCCCAGGAAGATGGGGGCACCCAAGCCC-CCCGGGGTGGCAGCGGGAGACCCTTGATCAGCCAGTGGCTGAGAGCCCAAGGGCGTGACCTTGGGGGAGAGCTTGGGGTGGG------GGAGCTTTGTGGG--GGGAG-------------GCGAGGGCACCTCCAGACTGGAGCCCTCTCTGGGG----AG-GGAAGAGCAGGGGGGACCAGGTGTGAGCTGGGTTCG----A------------------GGAGACGCAGGCTTTGGGGCGGGAGTGTGTGGTCCAGGGCCACG-----------GAGGGGATGAGGGCAGTGACCACAGGAAGGGTGAGCAGGAAGGA----------------------GGGGTGGGCATCA-CACGGGGTCCAGGGCA--CCGA----GAGTGTGGGCCACTGGGCCTCGGCC---------------GGGGCCATCCCTGGCCTTGCTCT------GGTCCTGATGC-ACCCGGGGCTTTCTGGTTCCC--CTTCC-------------CCGCCG----------------------------------------------------------------------------------------------CCCATCACAGGGGCTCCGGCAGCCTGCGTCTTCCTGAGGACGCCTAGGACGGAGTCCCCTTTCCAG------------CTC-------------------------CG-------TGC---AGAGCCACCTTCTG----CAGGGACGGAGCCAGTGCCTCCTGGGCAAAG-CTCCTAACTGGGTTCGGGCATTTGATTCTGAGTCGATGACGGGACCCTGGTTCTTGTGGTCAGCCCAGG-TGACCCGTCCTGTCTCCTCAGAGTCT------G----TGCCACCTACCCTCCCTGACCCTGGACCCAAGGGAGTGTCCCAGGCTGCCCGGCCTCTGG-----------CGCCCTCTGGCCCTGGCTCTGTG-------------------------------------------------------------     
20 Octodon_degus-NW_004524689.1-171520_171617               81.8%  28.5%    ---------------------------------------------------------------------------------------------------------------GACAGTGGTGCCAG--------GCCCCAGGCTGGCAGGGTGAGCTCTAGGCCTGGCCCCCACCATGCCCTCAGCCATTCTGGGAGTGGGGTGGGGTGAGATGGGGCCCCTGCTCGGAGTGGTCCAGCCCTTGGCTCTGAGCTCTGTCCTC----------AGGCCATACCGGTCTTAGGG----TGATACAGTTGCCCTGCTATGTCCCGTCTGGAGTGTTGGCTCATGTGGCTGTGGCTATCAGCCTGTATCCACCTG----------------TCCCTGGTGTCACCTTG---------GTCCCCAGGGCCATGGA------------GGGGCC------TCCCTGGCCACAGCGGATTA----GCTGGGT----------CTG--------GTCAGCAGAGGATTATGGCCTGAGGC------TGCAGAGGGGGTCAGGGAA--C-------AGGGGGTCCTCCACCTGTGCCCCTTCCCA-GGCCCAGG-------CCAGGCACCCCCCATGAATAGTGAGGCAGGAGGGG-ACAAGGGTGGCCA-CC----TG--------------------------------GGGCTTCATGGTGTGAGGCAGG-------------------------------AGCACCCCATT---CTGAAGGTAGAGG-TGAATGGAGACTTCCTGGTCCATTTTCCACA--GCTCA------GAGCAGGATGTGTTGGCTGGGTGGTGTGGAGGG--ACATCT-----GATGCCCCGGGGGCA---GGCGAGAGGGCCGCCACATCTCACCCGGCCTGGG------GGACACCAGAGGCCACAGTGTCTCCTGGTACTT--GGACC-------------AGTGTC--------CC--------------------------------------AGCTTGGTTCTCTGGGCC----------------T-TTGGATCCCCATAGA---------------------------------GGCCTCCAGG--AC-CACACCCCTTCCGTCCCAGAGTAGAATGCA-CCCTTAATCTAATGGGGAAGAGGGCAGGCTGC-----CTGCCGACCTCCAG---CCAGAAAATGAGG---CAGGGCCTCTGGCCAGGGCCCCTAATTGGGTTCTGAGTTTGGCTTTGAGCTGATTACATCTGATCTGGCCGGGTGGGTC---CTGCTTCTCTGTGGCCAGGGTTCCTGTTGCCAGGGATACTG-GAATGACAGGCATGGGATGACAGGGCATC-----CTTGTCCCAGTGGTG-C------------------TTGACTGGGAGTGTGTGGCCAGCGGTGG-----GGC-----CTGGCCAGCAAGG--------------------------------     
21 Lipotes_vexillifer-NW_006774135.1-177656_177752          79.8%  25.4%    -------------------------------------------------------------CACCATGCGGGTG-----ACACAGCCACCTCTGGGAGGGGTGCTCCCCGC-CAGCGTCCTGCAGCCCTGGGGCATCCCTGTCTTGCACAGCAGCTATGGTTCTGCACCCACCTGACTCCTGGAGCATCAGAGGAGGAGTG-G-------------G-GGTCCCCTGGGCAGCGGCCTCGCTAGCAGAGCCCTGCCTGAGG-CAGATT-AGCCGGACCTCATCTGCCTGGTC---AGTGGAGGATTATGGCCTGGGGCAGCCGTGGAGACTCAGGGA-GTCTGGG--ATGCAG----------------------------------------------------------------------GGGCCGGGCCCCCTCCCAGAACCCCTGCCCAGGAAGATGGGGGCACCCAAGCCCCCCCGGGGTGGCGGCAGGAGACCCTTGATCAGCCAGTGGCTGAGAGCCCAAGGGCGTGGCCTGGGGGGAGAGCTTGGCGTGGG------GGAGCTTTGGTGGCGGGGAG-------------GCGAGGGCACTTCCAGACTGGAGCCAGCTCTGGGG----AG-GGGAGAGAAGGAGGGACCAGGTGTGAGCTGAGTTCG----A------------------GGAGACGCAGGCTTTGGGGTGGGAGCGTGTGGTCCAGGCTGGCCACCCC-CTTTGGAGGGGGTGAGGGCAGTGACCACAGGAAGGGTCAGCAGGAAGGA----------------------GGGGGGGGTATAA-AACGGNNNNNNNNNNN--NNNN----NNNNNNNNNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNN--NNNNN-------------NNNNNN----------------------------------------------------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------NNNN-NN---------------------NN-------NNN---NNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNGAAGGAGGGG-TGGG-TATCACACGGGGCCCAGGGCACTGAG----AGTG-----TGGGCCACTGGGCCTCGGCCGGGGCTACCC-CTGGCCCTGCTCTGGCCTGATGCTCCTGGGGCT----TTCTGGTTCCCCTTCCCCCCCGCCCATCACAGGGGCTCCGGCAGCCTGT---------GT-----------CTTCCTGAGGAC---GCCCAGGA-------------------------------------------------------------     
22 Leopardus_geoffroyi-NC_059328.1-180670_180771            83.1%  31.7%    ---------------------------------------------------------------------------------------AG--GTACCCAGCATGCTCAGCGGCACTGTGGGGGCAACATGGTGTCCCCAGAGTCAGGAACCCCCCCTGCCACGGTGTCCTCAGACCCTGGTCAGAGTGTCAGAGCTCAG-GTGGGGGTCACCAGGGTCTTGCGGGCAACAGAGGGGCTTTGGTGGCAGAGCCCTGCATCAGGCTGGACTGATTGGACCGTCCTCCGCCGGGTCAGTGGG------AACCACCCTGGGCTGGCTGAGGAGGACTCAGGGGA-----------------GC-------------------------------------------------------AGGGCCACTCAGTGTGGGCCCCCTCCTGGGCCCCCTACCCAGGGAGATTAGGGCACCAGAGCCCCCCCTGGCTGACGGCAGGAGACCATTGATCTGGGCTGAGAG----CCTAAGGGGCCTGACCCGAGGATGGCAAGGTGTGGCCGGCTCAGGGAGCTTTTGTCCGG-------------GGGGAGGTGAGAAGACCCCAGAAAGGGGCCAGGCGTGGGGGAGGAA-AGAGGCGCGGGTGTGACCAGGTGTAACCTGGGTTTG----A------------------AGAGCCGCAGGCTTTGAGGCAGGAGGGGATGCCCCAGCGTCAGGGAGGG-CCCGCCGATGGAATG-------GGGCC-GTGACACAGGACCGGCAGG-T-----------------------GTG-GCCTGG--GGAGCCAGCCTCGGACC-----------------------------------------------------CGC-------------CTCC------CGGCCTC-------------CTGCTCTGGTCCC--TCTGC-------------CCCGCTCCAGCTGCCC---CCCC-------------------------------------------------------------------GAACACGCAGATGCTGT-CAGGGCTC-CGCAGCCG--------CGTCTCCTGGAGGAGACCCAGGACCCTTTCTCTTTCTAGAGGCTGGTGGCTTCCTAACCTGATTCCACATAGCGCCGCCTCCT-GAAGGGACGGACTCGG--------------------AGCCGC-TCTGGCAAAGGCTCCTAAGTGGGTTCTGGCATTTGGCTTTGAGTCGACTGCGTTGGCTCTGGTCGGGTGGGGC---CCTGTTCCCTGTGGTCAGCC-CGGGACGCCCATCAC---TAGCTCCTCAAGGCCTGCCACCTCCCCACCC-------CCGGCCCCCCCGCTCCGACCTCGGA----CCGGCTTGTGCCCAGCTCTGT---------GGCCCAGGCC------CCAGCCACTC-----------------------------------     
23 Nannospalax_galili-NW_008355419.1-161505_161718          80.3%  28.4%    ---------------------------------------------------------------------------------------------------------------------------------------TCCTTACTGGCAGAGCCCTGTATAAGGATGGATTAGC----------TGGGCTTCTGCCTGCCTGGTCAGG--------GG-----------AGGATTATGGCCTGGGCCACTGAGGAGGGTC-------------A--------GGGGGTCAGGG----GGTCAGG----------------------GGTGCAGTGGCTCAGGTCCTC----CACTGGGGGGCTGGCGTCAGCTCCATCACTGGA----T--ATGTGCCCTTCTTG---------GAGCTCCAGCCTGTGCAG-----CC----TGCCCCCTCCTCTGGCTGACGGTGGGAGGCTA----ACAGGGT----------GGC--------TGAGAGCTGAAAGCCTGGCCTGAGAA------GGGCAGAGGGCAGAGGCGGCCATCCCTGAGGAGCTTTGGGGAGCTGGGCCCAGGCAAGGGAAGCACAGGCATGTGCAGGGTACCTAGA----------GAAAAGAGGAAAACTGGGCGTTCTG-CCATGCAG--------------------------------TGAGTCTGTGAGCTCTGAGTGAAG----TGACCCAGTCATTGGAGGGCAGAGATATCTGATGGA---CTGTGGGCAGCAGGCAAGGAGAAGGGTGGTAGTCACCTAT-------GCTCA------AG--------------------------GCAGA--GGATCA-----CGTGGCCCTGGAGCA---CTCAGAGTATGTGCCCCATCTTGGCCAGCCTTAG------GCTCCTGCAG---------CCCTCTAGATACTT--GGACC-------------TCTTCT--------TC---CCCA-----------------------GCTTCGGCTTCACAGCTCCCTGGGGATTCTGGGAGCTGCCTAT-ACAGGTGACCACACCGTCAGCATCT--CCTGTGACCTGTCTCCCTGGGGACTGATAGGACTT-TTGCTCCTTCCTGCCCTAGCAGCAAATGGTTCCCTAATCCAATTTG----CAGCAGAAAGGGC-----CTGTCGACCTCCAG---CCAGCAGATGAGG---CAAAGCTTCG-GGCCAAGCTCCTAATTGGGTCCTGGGTTTGGCTGTGAGTTGATTACATCAGATCTGGCTCAGTGGGTC---CTGGTTCCCTGTGGCTGAGCTGCCTGTTGCCCAGGACATAG-AGACAAGCAGGCTGGGGTTAACAAGGTGG-----GCTGGCAAGAGGACC-C------------------AGGGTACTTCTTGTGGGGGTACTGTGGGTATAGGAT-----GTGGTCATTTGA---------------------------------     
24 Phoca_vitulina-NW_022589705.1-180224_180345              84.7%  36.5%    ----------------------------------------------------------------------------------------------------------------------------------------CCCGGCCCTGCACAGGGGCCACAGATCTGTGTCCACCTGCTTCATGGAGTCTCGGGGGGGGG-GG-GGCGGTTACCAGGGCTC-CAGGCAGCAGAAGGCCTTCGCTCA--GAGCCCTGCATCAGGCTGGGTTAACAGGACCTTCCTCCGCCCCCCGGTCAGCAGAGGACCAC-GACCTGGGTGGCTGAGGAGGACTAAGGGAGTCTAGG--GTGCAGGGGCT-------------------------------------------------------GGGCCCACTCAGTCCGTGCCCCCAAGTGCGTCCCCTACCCAGACAGATTGGGGCGCCTGA-GCCCCCCTGGCTGATGGCAGGAGACCACTGATCAGCTAGTGGCTGAGAGCCCAAGGGCATGACCTGAGGATGGCGGGTGTGGCTG-GCTCAGGGAGCTTTTTGGGGGGCTGGGAG-GTGAGAA---------CAGCCCCAGAGTGGGGCCAGGCATGGGGGAGGAA-AGAGGAGCAGGTACGACTGGGTGTAACCTGGGTTTG----A------------------GGAGCTGTAGGCTTTGAGGCAGGAGGGAATGGCCCCGTGTCGGGGAGGA-CAGCTGATGGAATGC-------AG-CA-GTGACGCAGGACAAGCAGG-T-----------------------GGG-GGGGAGCGGGGACCACCCTTGGACC-----------------------------------------------------CATGGCCTGGCCCCCACTCT------GGTCCTGATGC-TCCCCGGGGGTTTATGGTCCC--CTTGC-------------CCCGCTCCGATGCCCC----CCA-------------------------------------------------------------------CTCGGCGCAGAAGCTGT-CAGGGCTC-CGGCAGCCCCCACCTTCCCGAGGAGGCCCAGGACCCACTCCTTTTCCCGTTCCAACAGCTTCC-------TAATCTAATTCCACACAACACTCCTCCTG-CAAGGGACCGAGTCAG--------------------CGCCGC-TTTGGGAAAAGCTTTTAATTGGGTTCTGGCATTTGGCTTTGAGTCGATTATGTTGGATCTGGTCAGGTGGGGC---CCTGGCTCTCTGTGGTCAGCCCAGGATGCCCATCGC---TGTCTCCTCATGG-CCTGTGGCTTCCCAC------------------CCTCTCTGACCTTGGACCAGGCTGCCTGTGACCAGCTCTGT---------GGCGCAGGTC------CTGGATCCTCTCCTC------------------------------     
25 Ailuropoda_melanoleuca-NC_048228.1-180708_180808         84.5%  35.6%    ----------------------------------------------------------------------------------------------------CTCCTCCCCCGTGGTGCCCTATGGCCCTGGGGCACCCCGGCTCTGCACGAGGGGCCACAGATCTGTGTCCACCTGCCTCATGGAGTATCAGAGGGGGG-AT-GGCGGTTACCAGGGTCTCCAGGCAGCAGAGGGCCTTCGCTGGCACAGCCCCTCGTCAGGCTGGATTAATGAGACCTTCCTCTGCC---CGGTCAGCAGAGGACCATGCCCTGGGGTGGCTGAGGAGGACTTAAGGAGTCTGGG--GTGCAGGGGTC-------------------------------------------------------GGGCACACTTAACCTGTGCCTCCAAGTGCACCCCCTACCCAGGCAGGATGGGTCACC------------------------------------------TGAGCTGAGAGCCCAAGGGCATGACCTGAAGAGGGCAGGTGCGGCTG-GCTCAGGGAGCTTT-TGGGGGCCCGGGAG-GTGAGAC---------CATCCTCAGAGTGGGGCCAGGCTTGGGGGAGGAA-AGAGGAGCGGGTGCGATCAGGTGTAACCCGGGTTTA----A------------------AGAGATATAGGCTTTGAGGCAGGAGGGAAGGGCCCAGTGTCGGGAGGGG-CAGCTGATGGGATGG-------GG-GC-AGTAAC-----GTAGAACA-A-----------------------GGG-GGGGAGTGGGGACCACCCTCGGACC-----------------------------------------------------CATGTCCTGGTCCCCACTCT------GGTCCTGATGC-TCCCCAGGGGTTTCTGGTCCC--CCTGC-------------CCCGCTCTGAGCGCCCCCCCCCA-------------------------------------------------------------------AGTCGCGCAGAGGCTGT-CAGGGCTC-CGACAGCCCCTATCTTCCAAAGGAGGCCCAGGACCCACTCCCTTTCCTGTTCCCGAGGCTGACAGGTTTCTAATCTAATTCCA---CACGGCACTCCTG-CAAGGGACCGAGTCAG--------------------CACCGC-TCCGGCAAAGACTCTTAATCGGGTTCTGGCGTTTGGCTTTGCGTCGACTATGTTGGGTCTGGTCAGGTGGGGC---CCTGGCTCTCTGTGGTCAGTCCAGGATGCCCATCGC---TGTCTCCTCATGG-CCTGCGGCCTCCCAC------------------CCTTTCCGACCTTGGACCAGGCTGCCTGGCCTCTGGCACCT---------GCTGTGACCA------GCTCT-CCTGGGTTCGGGTC-------------------------     
   clustal                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            .                                                                                      .