Reference sequence (1): Target
Identities normalised by aligned length.
Colored by: consensus/70%

                                                              cov    pid  1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .         .         5         .         .         .         .         :         .         .         .         .         6         .         .         .         .         :         .         .         .         .         7         .         .         .         .         :         .         .         .         .         8         .         .         .         .         :         .         .         .         .         9         .         .         .         .         :         .         .         .         .         0         .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .         .   ] 1484
 1 Target                                                  100.0% 100.0%    ---------------------------------------------TGTGGGCCCGGCCCT----------------CC--------CTCCCGTGCGGC-------GCCAGTCCAGGGGCCCGGCTGATCTCCAGT-----------------------------------------------------------------------------------------------------GAGCAC-TGTGGCT-GGGGCAAGGTGGCCACTTCCTCCT-CCCTCCCGTCC--ACCCAA-GCACAGCCTCAGC-------CCCT-------CCTG-CATGCTGG----GCCGGCCCTTGGGGGCAGCACGGGAGGGGGATGCTGGGGCTGC--GAGGGGCAGG----------GGGGCG-CGGAAGAGCCAGGGC----CAGGAAGGGCTGCAGGAG--CAT-CTGG----CCCTCATGCCTCACTGCTGCTGA---GGTCCTTTGCTCTC---CTAGCCCTGGGATGCGGCTGCCTCAGGGACTCTTGGTGGCC----CTGGAGGGTGGGTAGGCTGGCCTGGGGGCCA-----------TTGGGAC---------------------------------------------AGCA--GGTGACGGTCAGGCCA-ATGCCAGCCGGGCCCAGGCACAG---------------CCCTGTGGGGGCTTCAGAGGGAGA----------CACGGGTGGGCCCAGGGAGGTCCTTTGAAATGTCCTGCTGAAAGGCAG-CAAGCGTCGGGAGAG-----------GAGGGGGCTTAGAGGCAGCCAGGGC------------------------CACC------------TCTGGACAGGCCTGGAAGAGGTGGGGC-CCCTGCCCGTCCCGTACACGCTCGTGAAGGGAAGAG--GTTGGTG---GAGGGGCATGTGCAGTCCC----CAT--GCCCC-TGTCGTGGGAGGGGCTGCGGTACCCAAAGCTGCCCC----GGGTGTGTGTGTACATGCCGGGAGGCCTGTGGGTGTGATTTGTGGGTTTTGTTGGAAGATTC-AT-TATTTTCCAGCCTTCCCCAGGGGAGAGGCGG-AGATGCTGAGCCACCGCTGGCCCCTTGTTGATGACAGCCGCGAGGCCCATGCTGCCTGCTGTGTTAGGACAAGATCGATCTCCGCCATAAAAACAAAATTAAGCCAAC-ACCGCCCTGGCTTCTGACAGCG--------CGCGC-TCT--TCCTCTAATCAGCTGCCAC-CCGC----CCGGTT-------------------------------CCAGCCTTG-GGAAGAAAGG--AAG-GGGCTGCAGGA-G----CA--AACC-TCTCACAGTGGGGAAACTGAG----GCACTGAGACAGGGAGG--ACAACCC----AAGG--------------------------     
 2 Sapajus_apella-NW_022437067.1-174302_174839              95.2%  60.7%    ----------------------------------------GCCCTTGGTTCCTCTGCCCT----------------TC--------CT----GGGACC-------CCTGGTCCGCTAGCATGACCACTCTGGGGT-----------------------------------------------------------------------------------------------------CCTGCC-TGAGGAG-AGGGCTGGAGG-----CACAGACT-CACTCCTGATC--AAATAA-AAATAGTTGGGGAGGAGG--CTCC-------CAGA-CGTGCGGGGGGACAAGTCGCTTCTCTGAGACGTTTAAATAATCTCCGCCATATGTGTGTGGGCCCGGCCCTCCCTCCCGTGCGGCGCGGGTCCAGGGGC----CCGGCTGATCCCCA----------GTGG----GCGCCATGGCTGGGGCAAGGCGG---CCACTTCCTCCTTC---CTCCCTCCACCCAAGTACAGGCTCAGCCCCTCTTGCATGCTGGGCCAGCTGTGGGGGCAGCATGGGAGGG-GGACG-----------TCAGGGC---------------------------------------------TGCA--G---AAGGGCCGGAGCCAGGAAGGGCTGCAGGAGCGTCTG---------------GCCCTCACACCTCACTGCAGCTGG----------CGTTCTGATGGGTGGGGAGGCCCTTTGAAAGGTCCTGGTGAAAGGCAG-CCACCCTCAGGAGAG-----------GA-GGGGCTTATAGGCAGCCAGGGC------------------------CCCC------------TCTGGACCGGCCTGGAAGAGGTGGGCC-TCCCACCCACCCTGTACCTGCTTGTGAAGAGAAGGG--GCCGGG----------------------------------CCC-TGTCGTGGGAGGGGCTGTGGCACCCGAAGGTGCCCGGGTGTGTGTGTAGTGTACACGCCGGGCGGCCTGTGGGTGTGAGTCGTGGGTTTTGTTGGAAGAGTCCAT-TGATTTTCCAGCCTTCCCTGGGGGGAGGCGG-AGATGCTGAGCCACCCGCGGCCTGTTGTTGACGGCATCCTCCAGGCCTGTGCTACCTG--CTGTTAGGACAAGATCGATCTCCGTCATAAAAACAAAATTAAGCCAGC-ACCACCCTGGCTTCCGACAGCG--------TGCTCTTCC--TCCTCTAAGCAGCTGCCAC-CCGC----CTGGTT-------------------------------CAGGCCTTG-GGAAGAAAGG--GAG-GGGCTGCAGGA-G----CA--AACT-TTTCACAGCGGGGAAACTGAG----GCACCGAGACAGGGAGG--ACCACCC----AATGTCAGGGGCA--GG-------------     
 3 Galeopterus_variegatus-NW_007727608.1-231701_232075      90.2%  47.9%    --------------------------------------------------------------------------------------------------------------------AGGTGTGGCTCCCGGGAGT-----------------------------------------------------------------------------------------------------CCTGCC-TGGGGAG-GA-----CTGAGGAAGCCGACTCA-CATTCCTGATA--AAATAA-AAATAGTTGGGGAGGAGG--CGCC-------CAGA-CATGCGGGGGGGACGAGTGCTTCTCTCAGACGTTTAAATAATCTCCGCCATATGTGTGTGGGCCCGTCCCTCCCTCCTGTGCTAGCAGGGCCAG--GGA----CGGGCTGATCCCCGGGGC--TGGGCAGG----GGCTGCCGCCTCCTTCCTCCT-----------CTCCACCC---CAAGCC-------CGACCTGAGCGCGCACGGCCTGCTGGGCTGGCCCACAGGAGACACAGCGCGGGACAA-AGACC-----------TCAGGCCACCGGGGGGCAGGCAGCGGCTGAGGACCCCGGG-----------GGGCT--GTAGAAGGGACAGGGTGGGGAAGGGCTGGACGAGTCAG-G---------------CCCTGGATGTCCCACTGCTGCTGACCGTTCTAGGAAGGGTGGACATGGGGAGGAACCGTTTGAAGGTCCTCCAGAAAGA------AGTGTTAGAAGGG-----------GAAGGGGCTTCGAGGCTGCGCCGGGCCGGCAGGTGG-----GGCAGAGCCAGT------------TCCACACAGGGAGGTGGGAGATGTGTC-CCCTGCGCCTGGGCCCCG------------------------------CACATGCCTGAGCAAGGGGGTTGCAT--CCAGGTGCGGGGGGCGGGGGCTGAGGCTCCCGCAGGTGCC------CGTCCGTGTGTGCACACACCAGAAGCCTGTGGGTGTGATTTGTGAGTTTTGTTGGAAGATTC-AT-TGATTTTCCAGCCTTCCCAGGGGAGAGGTGG-AGACGCTGAGCTGTTGTTGGCCACGTGTTG--AGCAGCCGCAAGGCCCGTGTTGCCTCCTGCGTTAGGACAAGATCGATCTCCGCCGTAAAAACAGAATTAAACCAAC-GCTGCCCTGGCTTCCTATGGCG--------TGGGATTTT--CCTCCTTTAAACAGCAGCT-GCTG----CCTGTG-------------------------------CAGAGCTTG-GGGAAGGAGG--GAA-GGGCTGCAGGA-G----CA--CACCTTTACATGACAGGGAAACTGAG----GCACCGAGACAGGGAGG--ACCACCC----CAGGG-------------------------     
 4 Tupaia_chinensis-NW_006198262.1-173652_173986            88.2%  41.9%    --------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGGTCTGGGAAAGGGACAGGGCTGGAGAAG-----------------------------------GCTCAGAGGATCCTTGCCTCTGTAT--------GTCCCACGGTTACGGAT-CATTCTACATA--AGGTAG-ACACAGGAAGGCCTATCGAAAGTCTTACAGAAAGGCAGAGAAGGGACTAGCAGTTAGTGTAATGGCTACGTCGCTGGACTCCCATGTAGTTGACTGTGGTTCGAGTCCCGGACCCGGTGGCTTAAACTCAGGCCGGGCGCGTGTGCGTGCCCAAGATCTTGAGAGGA----GAAAAAAGGAGAAGGGATTGTGG-------------TGTG---GCCATCCCCTCTGGGGGGTGATTTCTCACTTTCTGTCTCTCTGTCTCTCTCTGTCGCACACCC-----------TA-----------TAACGAA------AAACAAACAAAAAAAA-------AAA-------------AAAA--AA-----AAAAAGGGCAGAGAAATATTGGAAGAGGAAG-----------------GGGTTTCAGGGAGACTGGGT--------------CAGGCCTGCAGTGCACTGGGTCGTG-----TGGCCCGGGGTCAGG------GCTGTCAC--TGG-----------AC-AAGGCCTGGGAGATGTGGAACC------------------------CCAC------------AGAGAGGGTAGAGACATGTTCCCCGTG-CCCTAGCCCCCCCATACATGCTTGCTGAGTGAAGCG---TGAGT----GAATAGGGTGTGCACCATC--CCCAC--ACCCCTGTTACGGGAGGAGGCGCTGTAAAGGTGTCCGTGTGTGTGTGTGTGTGTGTGTATGCTCTGGGAAGCTCGTGGGTGTGATTTGTGAGTTTTGTTGAAAGATTAAGT-TGGTTTTCCAGCCTTCCCCAGGGAGAGGTGG-AGATGCTAAGCTGCCGCTGGCCTCTTGGT---GACAGCAGCCGAGCCCGTGTAGCCTACTGTGTTAGGGCAAGATCGATCTCCGCCATAAAAACACAATTAAACCAAC-GCTGCCCTGGCTTCCGACAGTG--------CAGGCTCCT--TCCTCAAGCAGCTGCTGCCTGTGT----CCTGTG-------------------------------CAGGGCTTG-GGGAAGAAGG--AGT-GTGGAGCTGCA-GGG--AT--GTGCTTACGACCATGAGGAAACTGAG----ACACAGAGATGGGGGAG--GGCTCCC----AC----------------------------     
 5 Castor_canadensis-NW_017871110.1-160470_160737           82.6%  34.7%    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGTTGGGGAGGAGGCGCCC------AGAC-----ATGCGGGGGACAGTTGCTTCTCTCAGACGTTTAAATAATCTCAGCCATATGTGTGTGGGCCTGTCCCTCCCTCCTGGAGCTGCGCTGGGCCAGGGGCCGGGCTCATCCCGGTGGGTGT--CACTGTGG-----------GGCTA----GGCAGGGCCACTTCCTCCTTCCTTCTTTCAACCCCAGGCACTGTTTAAGGGTCTGCTGCCTGCTGATCTGACCTGCGGGAGATCAGGAGGCCTTAGTCCCCCATGTTC------TATGCTGAGTAGTTAGGAGGTGGAGGCTAAGGTCCAGGGGTGGGTCATTTGTTGTGGTGTATGGGCCATGGGTGAGTGGGGACCCTTTCCCACCCTTCAGGGTGCTGGTCTCCCCTGGCTGTCCCAGGTGTCTGAGACACCTGTAAGTAGAGTGGCCATGGA-TGGACCCTTTGGAAGGTTGGTCAGGAAGGCAAAGAGGCTTCAATGAGG------------------------------GAATACAGA-TTTGTTATGCAGCGTGGAGCCACAGCT-------GCACTGGACAGGGAGGAGGGAGACTGTCCCCATGCCCAGCCCTGTCTGTGCTCACTAAGTGGAGGT---GAGTGGA---TAGGGCATGCCTGTCCTG----TGT--GTGAGAGATGTGTGTGGGGGGCCCTGCTGCACCCAAAGTTACCCCTGTGCTTGTGTGCACACGCCGTGAAGCCTGTGGGTATAATTTGTGGATTTTGTTAGAGGATTAAAT-TGATTTTCCAGCTTTCCCTGGGGAGAGGTGGAGCTGTTGAGC-TGCCGCTGGCCTCTTGTTGA--TGGCAGCCACGAGACCGTGTTGCTGCTGTGTTGGGACAAGAAGAAGCTCCACCACAGGAACAAAACCACACAGTG-CTGCCCTGGCTTCCGACAGTGC---------AGGCTCTT--CCTTCTTCCAACAGCTGCATGGGC------------------------------------------------TC-GGGAAGAAGG--AGCCAGGGCTGCAGG-GA--TGT--GACTTTTAGCAA-TTGGAGAATTGAG----GTGCAGAGATGC----A--GTGTCTA----TGGTAGGGAGGTT--GGG------------     
 6 Propithecus_coquereli-NW_012152752.1-167328_167606       84.9%  37.9%    GGGAGAAGGACACATCCGGGCAGGTGGGGCTCCAGGCCCTGCTGCTCCCTGCCCAGCCTTCTCTGGGGACGGCCAAGC--------CTGCCGATGCCC----CACTGCCCCGCTGCCGCCCGGCACAGCCACGG------------------------------------------------------------------------------------------------------GGGGTC-CTGCCTG-GGGGGCGGTCCAGGAAGCCGACTC-ACACTCTGATA--AAGTAA-AAATAGTCGGAG-GAG---GCGCC-------CAGA-CGTGCGGGGGGGCCAGTCGCTTCTCTCAGATGTTTAAATAATCTCCACCATATGTGTGTGGGCCCGGCCTCCCTCCCATGGGGCGCCGGGC-CAGGGGC----CAGGATGATCCCGCAGG---GCTGGGG---------------------CAGGTGG---CCGCTTCCTCCCTCCTCCCCACCCCAAGCACTGTCTGAGTGCCTCCTGCACGCAGAGGTGGCCACCGGGGACCGC------------------------------AGGGCT----------GTGCAGGGGACAGGCTGTCGGG-------------C------------------------------------------------------------------------CACTGCTGCTGGGCGCTCTAAGCAGGGCGGACGAGGGAAGGGTCCTTCAGAAGCCGCTGTGGAAAGGCCAAGACGTATCAGAAGAG-----------GAAGGGGCT-CAGGGGGCCGG-GCC-------------------------AGA------------CCTGGGGCGGGTGC---CGGGCTGTCC-CCCGTGCCCTGGGGT------------------------CAGCGG---ACAGGGCGTGTGCAGTCCC----CGC--ACTCCG---CT-GTGGGGGGCCGTGGCACCTGCAGGCACCCC------TGGACATGCACACAAGGGGGAAGCCTGTGGGTGTGATCTGAGGGTTTTGTTGGAAGATTAAAT-TGATTTTCCAGCCCCCCGGGGAGAGGC-GGA-TGCCGCGCTGCCC----CTGGCCTCTTGTCAGTGCAGCCGCGAGGCGCGTGTCGCTGGCTGTGTTAGCACAGGATCGATCTCCGCCGTAGACACACAATCACATCCAC-ACTGTCCTGGCTCCTGACAGCG--------CTGACTCCT--CATCCTCAAGCAGCCGCCGCCTGC----TGCCGT----------------------------------CCC-------ATGCAGG--GCC-CGGGGAA----------GA--AAGGAGGGGCTACAGGGGAAACTGAG----GCACAGAGG----GGAG--ACCCGCC----CAAGGCCAGGGGA--GGTCTGGGTCTC---     
 7 Otolemur_garnettii-NW_003852462.1-164837_165138          89.8%  37.5%    -----------------------CTTTGACCCAGCAAAGTACAGCAGGCTGGGCAGTTATCGCT------------GG--------CTCCATAGGC---------TTAGCTCCCGGACCCCAGCACAGCCACCTG-----------------------------------------------------------------------------------------------------GGGACC-AGT-CTG-GGGAGGGCTTCAGGGAGCGACTCA-CACTCCTGATA--ATATAA-AAATAGTTGGGAGGAG---GCGCC-------CAGA-C-GTGCGGGGGGTGAGTTGCTTCTCTCAGATGTTTAAATTATCTCTGCCATATGTGTGTGGGCCTGGGCTCCCTCCCGTGCGGTGCTGGGC-CAGGGTC----CGGGATGATCCCTGCAGT--GGCCAGG---------------------CAGGCGG---CTGCTTCCTCCTTCCTCCACATCCCAGGCACTGTCTGGGTACTCTCTACACCCTGAGTAGCCTGAAGGCAGGGCTGTGGA----------CCA-----------TGGGGCG----------TGCGAGGGACAGGGCTTCTGGG-------------AGGT--CT---------------GAGGAGCCCTGGCCCAGGGTG-C---------------CGTTGAGCAGCCAACTGCTGCTGGTCGTTCTGAGCAGGGTGGGCATGGAGAGGGTCCCTCTGAAGTTTCTGAAGAAATGCAAAAAAATCTCAGAAGAA-----------AAT----CTTCAGGGAGCCAG-GCT-------------------------AGA------------CCTGCAGTGGGTGC---TATGCCGTCC-TTGTGCCCA--GGGT------------------------CAGTGG---TAA--ATATGTGTAGTCCC----TGT--GCCCCAGCAGTGGGAGGGGGCTGTGGCTCCTGAAGGCACTGC----TGGACGTGTGTGCACAAGCCAGGAGGCTGTGGGTGTGATCTGCGGGTTTCAGTGTTAGATTAAAT-TGATTTTCCAGCTTCCCCTGGGAGGGGAGGG-TACGATGAGC-------TGTG--------GCTGTTGACAGCAGCCCGCGTGTTGCCTACTGTGTTAGGACAAGATCGATCTCCACCATAAAAACGAAATTAAGCAGAT-ACTGCCCTGGCTTCCGACAGTG--------CCGGCTGTT--CATCCTCCAAGCAGTTGCCACCTG----CTGCTG-------------------------------TCCCATGCA-GGGTCTAGGG--GAG-AAAAGAA----------GA--AAGGAGGGATTGCAGGGGAAACTGAC----ACATGGAGACCATCCAG--GGTCCAG----GCAGCTGCCAAAG-----------C-----     
 8 Vicugna_pacos-NW_021999318.1-176888_177101               79.4%  31.0%    -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCTCCCTGGCCCCGGGCAC-AGCTGCCCTGGGG---------------TCTTGC--CCAGGGGGTGGGCTTGAGGGTGCCGACTCAG-ACTCCCTGATG--AAATAA-AAAATAGTTGGGGAGGAGGCGCCC------AGACG----TGCGGGGGGGACGAGCAGCTTCCCAGACGTTTAAATAATCTCCACCATATGTGAGTGGGCCTGCTCCTCCCTCCTGGAGGCGCCGCCAGGGCCGGGCTGAGGC--CTAGGGGTGCTGG--AGCTGGCG-------CAGGGGCTG---GGGCAGGGCGTCTG-TCCCCCCCCGCCCGTTTGCCGGAGCACAGTCTGAGCGCCCACTGTGTGCCGAGCTGGTCCTGCAGCAGAGAGCCGAGATGCAGAGCAGGGAGGAGACTGAGGGGGGCT-GAGGTCCCCATGAGGGGCTGTG----------------GCCAGGACAGAGTTGGGGGACAGGGCCAGAGAGCCTCGGGCCCCAGGTGTCCCACT--------------------------GTTGCTGACCCGTCTAAGTGAAGTGAACCCTGAA-GGGCCCGTTTGAAGTTTCTTCGAGAAGGCAAAG-------------------------------------------------AGGTATCA--GAGG----AGGGAGGGGCTGGA---------GGCAGACATGCAGG--------------GAGAGGAGAC----TGCTGGCTTGGTCCATGAAGGG---CGAGGGAAC--AAGGCGTGTGCACCTGC----TG------GGGAGGGGCCCGCAGCACCTAGAAAGTCCGCACACTTGTGTGTGTGCGTGCGCGCTCGCACTGGGAAGCCTGTGGGTGTAATTTGTGGGTTTTGTTGGAAGATTAAAT-TGATTTTCCAGCCTTCCCTGGGGGCGAGGCGGAGATGCTGAC-TGCCGCTGTCCC-TTGCTGC--CTGCTGTGTTAGGACAA----------------------GATCGATCTCTACCGTAAAAACAAAATTAAGCTGGT-GCTGCCCGGCTTCCGACTGCAAGG---------GCTCTT--CCTCCTCGGAGCAGCTGTCACCCGTG-TCCTGTGGCTGCCTGTGTCCTGTGGCTACCATCCTCTGCAGAGCTTG-GGGAAGGAAG--GAGTGAG-GGGGCTG-GG--GTC--ACCTGCCGACAGACAGGGGAACTGAG----GCA---------------------------------------------------------     
 9 Carlito_syrichta-NW_007256000.1-132273_132586            80.4%  34.4%    -------------------------------------------------------------------------------------------------------------------------------------------CCGACCCAGAGCTTAGCC----ACTCCCGCAGAGAGCCTGAGCTGCCCGCTGCATGGAGGGCGCGGCC-ACCACCACTGCTGAAAGGCCCTGCTGGTCCTCCTTAGGCCTGTCCCTGGGGTCCACGAACCGACTTG-CACTCCTGATA--CACTAG-AAATAGTTGGGGGAGGCG--------------------CTCGAAAGCGCGGGGGACGTCTCCCAGACGTCGACATCATCTCTGCCATCTGTGTGTGGGCCTGTCCTTCCGCCCGTGCTGCGCCGGGCCAGGGGTT------GGCTGATCCGTGGTGG--GCACAGC------------AGCCGGGACAGGGTGGCCACTTCCTCCCCTCTCCTGTCTACTCCAAACACGGTCTGAGCACTGCCTGCCTACGGAGCTGGCCCCAGGAAGAAGGCCCGAGGCAGCCGG---------------------------GGAGGAGGCCGG----------------------------GGCT--GA---------------------GGATGGACCAGGGCCGG---------------GGAAGGAACAAGTCTCGCTGCTGGCCATCCCCAGGAGGGTGGGTCTGGGGAGG-----------GCCGCCTCAGTCAGGCAGACAAGTGTTGGAGGAG-----------GAGAGGGCTTCAGGGCTGGGCCGTGCGGTCT-GGGGTGCTGGAGGGCCCCGGG------------GAGGTGGCACCCTGCAGGGAGTGGGGC-CCCTGCACGTCTCTC----------------------------------AGTGAGGGGTCCATG-------GAC--AAAGCATGCCAGCTGTGGGGGCTGGGCACCTAAGGG--------TGCTGGATGTGTGCACACGCCGGGAAACCTGTGGGTGTGATTCGTGAGTTTGT-TGGAAGATGTCAT-TGATTCCCCAGCTCCCCTGGGGGCAGGAGCTGCGCTGGCCTC--------------------------TTGGTGGCAGCCGTGTTGCCTACAATGCCAGGGCAAGATTGCTCTCTGCCAGGAAGACAGATTTAAGCCAGC-GCTGCCCATACTTCCGACAGTG--------TGGGCTCTT--CCTCCTGTGAGCAGCTGCCACCCA----CCCATG-------------------------------CAGGGCTGG-AGGG---------AG-GGGCTGCAG--------GG--GCACCTTTGACAGTGGGGAAACTGAG----GCACAGGGATGAGGAGG--ACCACCC----AAGGTTG-GGGCA--GGTCTGGG-------     
10 Hipposideros_armiger-NW_017731634.1-162552_162792        80.7%  32.6%    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG----CCCTGGCTCCTGTGCCCCCCCAGGTACTGGGCAC-AGCCACCCTGGGG---------------TCCT-------GTGGGAAGGGTGGGAGGAGCCGACTCAC-ACTCTCTGATA--AAATAA-AAATAGTT--GGGAGGAGGCACCC------AGACGTGCGGGGGGAGGGGGCGAGCTGCTTCTCAGACGTTTAAATAATCTTGGCCATCTGTGTGTGGGCCTGTCCCTCCCCGCTGTGAGGCTCTGGCCAAGGACCGGCCAG------TCCCCCGTGC--TGCTGG---------------------------AGCAGGCG-GCCCCTTCTCCCTCTCCTCCACCCAGCAGTGTGAGCACCTACTGTGTGCTGAGCTGGGCCCACAGCCGAGAGCTCGGGCTGCTGCCAGGGACCCCGGGGTGGGGGTGG-GGGGC-------------T-------------------------------------------GTGGGAGGGAGCCTTGGCCCATGTGTCCCGCT--------------------------GTTGCTGAACATAATAAGCCAAGTGGACAAAGGAAGCGCCTGCTAACGGG-CCTTCAGGAAGGCAGAGAAGTCTGGAGGAG------------GAAGGGGCT-GGAGGTGATTGAGCAGGGCTTGCTGGGGGTGGGGGGAGTCCAGGGA---------GGTGGGGGTGCCCC--------------CTGCCCAGCCCCCAGGCATGTCTGCTCAATGACGGG---GCGAGTGAATCAGGGTGTGTGCCTGTGC----TG------CACCCACTGTGGGTGGGGGGCTGCATCTCAAGGTTCTGCCCGCGTGTGTGCGGGCTCTCGCCGGGAAGCCCGTGGGTGTACTTTGTGGGTTTCTTTGGAAGATTAGAT-TGATTTTCCAGCCTTCCCCGGGGGAGAGGCGGAGATGCTGAC-TGCCGCTGGCCTCTTGTCGC--CTACTGTGTTAGGACAA----------------------GATCGATCTCTTCTATAAAAACAAAATTAAACCAGT-GCTCCCAGCTCCTGACA------GTG----AACGCTCTT--CCTCCCAGGAGCAGCGGCCACCCGTG-TCCTGAGTCCGCCACTGTCCTCT--------------GCAGGGTTTG-GGGAAGAAAG--GAG-CAG-GGGCCTG-GG--GGC--GCCTTCTGGCAGATGGGGGAACTGAG----GCTGGGAGACAGGTGAG-------------------------------------------     
11 Ceratotherium_simum-NW_004454172.1-172969_173224         81.8%  35.9%    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAC-ACTCCTTGATA--AAATAA-AAATAGTTGGGGA-GGAGGCG----------------CCCAGACGTGGGGTGAGCTGCTTCTCAGACGTTGAAATAATCTCCACCATATGTGTGTGGGCCCGTCCCTCCCTCCTCTGAGGCGCTGGCCAGGGGCTGGGCTGG--TCCCCCGTGGGTG--CGCCGGAGCCCGACGCAGCGGCTGGGGCAGGATGGCCTCTT-CTTGCTTCCTCTTGTCCACCCAAGTGCAGTCTGAGCGCCTACTGCATGTTGAGCTGGGCCAGCAGCAGAGCCAAGACGCAGTGTGGAGAGGCGGGAACTCAGGGCTGCCGGGGAGGCGGGTGGGGGCTGAGGACCCCG---------TGGGGGGCCGTGGCAGGGACAGGGCCAGAGGAGCCTCAGGCCCCACATGTCCCACT--------------------------GCTGCTGACCGTTCGAAGTAAAGTGGACATGGGGAGGGCCTTCAAA-------------AAGGCAAAGAAGTATTGGAGGAG-----------GAACGGGCT-GGAGGCAGATGAGCAGGGCTGGGTCAGAGGGTCCCGCCTGAAGTCCAGGGCCAGCACCCTGCAGGGAGTGGGG--ATG-TGCCGCACGCCAGGCTCGTGCGTGTTTGCTCAGTGACGGG---AC-CAGTGAGCAGGGCGTGTACACATGC----CTG--CGCCCCACTTGTGGGAGGGGCGCTTCCGCACCTCCAGGGTCTGCCTGTGTGTGTGTTCTCGCGCCGGGAAGCCTGTGGGTGTAATTTGTGGGTTTTGTAGGAAGATTAAAT-TGATTTTCCAGCCTCC-CC-GGAGAGAGGCGGAGATACTGAC-TGCTGCTGGCCTCTTGTTGC--CGGCCGTGTTAGGACAA----------------------GATCCATCTCTGCCACAGA-ACAAAATTAAACCAGC-GCTGCCCAGCTTCTGACAGCGAGG---------GCTCTT--CCTCCCTGGAGTAGCTGCCGCCCGTG-TCCTGCGGCCGCCGCCGTCCTCT--------------GCAGGGCTTA-AGGAAGAGAG--GAG-TGA-GGGGCTG-GA--GGC--GCCTTCTGACAGATGGGGGAACTGAG----GCACGGAGATGGGTG---------------------------------------------     
12 Lemur_catta-NC_059130.1-165877_166154                    87.3%  37.7%    ------TTTCTATTTTT----TGTTTAATAGAGACGGGGGTCTTACTCTTGCTCAGGCTTTTCTCGAACTCCTGAGCT--------CAAACGATCTT-----------CCTGCCTCGGCCTCCCAGAGTGTTGGG-----------------------------------------------------------------------------------------------------ATTACA-GGCGTGA-GCCACCACGCCCGGCCCCCGACTC-ACACTCTGATA--AAGTAA-AAATAGTCGGAG-GAG---GCGCC-------CAGA-CGTGCGGG-GGGCGAGTTGCTTCTCTCAGATGGTTAAATCGTCTCTGCCATATGTGTGTGGGCCCGGCCTCCCTCGG-TGGGGCGCTGGGC-CAGGGGC----CGGGATGATCCCGCAGG---GCCGGGG---------------------CAGGTGG---CTGCTTCCTCCCTCCTCCCCTCCCTGAGCACTGTCTGAGCGCCTCCTGCACACAGAGGTGGCCGCCGGGGACCAC------------------------------GGGGCT----------GTGCAGGGGACGGGGACCACGG-------------GGCT--GT---------------G-------------------------------------CAGGGGACGGGGCCCTGCTGCTGG-CCTCTCTAACAGGGCAGACGAGGAAAGGGTCCTTCTGAAGCCGCTGTGGAGAGGCCAGGAAGTATCAGAAGAG-----------GAAGGGGCTTCAGGGGGCCGG-GCC-------------------------AGA------------CCTGGGGCGGGTGC---CAGGCTGTCC-CCCGTGTCCTGGGGT------------------------CAGTGG---GGAGGGCGTGTGCAGTCCC----TGC--ACCCCTGCTGT-GGGGGGAGCCGTGGCACCTGCAGGCACCTG------CGTACGTGCGCACAAGCGGGAAGGCTGTGGGTGTGATTCGAGGGCTTG-TTGGAAGATTAAAT-TGATTTTCCAGCCCCCCAGGGAGAGGCGGGA-GGCGGAGCTGCCC----CTGGTCTCCTGTCAGTGCAGCCGGGA-GGCCGTGTCGCCCGCTGTGTCGGGACAGGATCGGTCTCCACCGTAAACACAAAATCACACTGGC-CCTGCCCTGGCTCCTGACCGCG--------TGGACTCCT--TGTACTTCAAGCAGTCGCCGCCGA----CCCCTA-------------------------------TAGGGC-------CCCGAGG--AAG-AAAGGAA----------GA--AAGGAGGGGCTGCAGGGGAAACTGAG----GCACAGAGACAGGGGAG--ACCCGCC----CAAGGCCAGGGGA--GG-------------     
13 Equus_asinus-NC_052181.1-174534_174737                   82.6%  35.5%    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCGACTCAC-ACTCCCTGATA--ACATAA-AAATAGTTAGAAG----ACGC----------------CCAGACGTGGGGACGAGCTGCTTCTCAGACGTTGAAATAATCTCCGCCATATGTGTGTGGGCCCATCCCTCCCTCCTCTGGGGCGCTGGCCAGGGGCCGGGCTGG--TCCCCCGTGGTTG--CGCCGAGCC-CGGCGTGGTGGCTGAGGTAGGGCAGCCTCTA-CCTCCTTCCTCTTCTCTGCCCAAGCACTGTCTGAGCACCTACCCTACGCTGGGCTCGCC--GCAGCAGAGCTGAGATGCAGCGTGGAGAGGAGGGACCCCGGGGCTGCTGGGGAGGCAGGCAGGGGCTGAGGAGGTAGAG---GATATAGGGGGCTGTGGCAGGGCCAGGGCCAGAGGAGCCT-CGGAGCGCCCTGTCCCACT--------------------------GCTGCTGACTGTTCTAAGTAAAGTGGACATGGGAAGGGCCCCCTTGAAGTTCCCCCAAAAAGGCAAAGACGTGTTGGAGGAG-----------GAGGAGGCT-GGAGGCAGACGAGAAGGGTCAGGCTGCAGG----------GAGTCCGGGGCCGGCAGCCCGCAGACAGGGGGGGGATGTGCGCCTAAGCCTGGCCCGCACCTGTCTGCTCATGAAGGGG---CACTGGTGAATAGGGCATGT-------G----CGA--ACCTCACTTTGGGGAGGGGGCCCGGCGGCATCTCCAGGGTCTGCCTGTGTGTG-------TGCGCGGGAAGCCTGTGGGTGTAACTTGTGGGTTTTGTTGGAGGGTTAAAT-TGATTTTCCAGCTCCCCCC-GGGGAGAGGTGGAGATGCTGAC-TGCCGCTGGCCTCTTGTTGC--C----GTGTTAGGACAA----------------------GATCGATCTCTGCCGCAGAAACAAAATTAAACCAAC-GTTTCCCGGCTTCCGACAGCGAGC---------GCGCTT--CCTCTTTGGAGAAGCTGCTGCCTGAG-TCCTGTGGCCACCACTGTCCTCT--------------ACGGGGCGTG-GGGAA-TGAG--GAT-CGA-GGGGCTG-GG--GGC--GCCTTCTGACAGATAGGGGTACTGAG----GTGCGGAGATGGGTGAA--AGCT-------------------------------------     
14 Microcebus_murinus-NC_033661.1-167758_167892             78.0%  23.6%    --------------TA-----TGC------------------------------TCCCC-------------------------------------------------T-----------------GGAGGG------------------------GGGGGTCCATAAGA-----CCATT-GCCCCCAAC---------------------CCCTGGGCCT--------CACAGCTGCAAGCTTTGGGTTCCAAG-----GAAGGGCACCCGCTGGTCCTCTTGTCC---------AGACAGGTCGGGAGCCTG-GGCCT-------TGGC-A---------------AGC---CTGCTG--CATCCAGCCGCCCTGCGCCAGCTGGGAGCTCCCTTGGCCTCA-ATCC-TTGGCCAGCTGGGCTGGCTCCCGGCCGGGATTAGCGCAGGGGAT-TGGCCGG-----------AGGGTGGGTGGGGCGGAGGC-------CCTGCCCT--G--CCCCCAGCCCCTGGGTCGGATGCAGCTTCTTCAGGGACTCCTCGGT------------------------------------------------------------------------------------------GGCC------------CTG-GAGGGTAGTGGGCTGGCCTGGGGGCC---------------GTCTGGGGCA--GCAGGTGACAGGCAGACCAATGCCACTGGGGCCTGGGGTCAGCCCTGTGGG-GGCTTTGGAGGGC-----------ACTGACGGGGAGGAGGAGGAGGTGGAGGAGAGAAGGGGAGCCCCGC----CGAGCCCCTGCGTCCAACACC----------ACCTCTGCCGGGCCTGCCGCTGAGCGCGGGC-----CCCCACTGGCCTCCGGGAGCCAGCCCCC--------CCCATCG--TCTGGGCATGTCCGGCCCCTGGCCGTCTCCGGACAGCGGGGCCCAGGGGACCGTGGCCTGCCTGGCGGAG--GTGTTCCTCTGGGTTGGAGGGAGCGTGGTGCTGTCTTCCAGGTGGCAGCTCGGCCCTCTGGGTAAGCAGGGGCTGCCTGGGTGCCCAGGG-AGGGTGGG---------------------------------------------------GGCCCCTCCTGGAGGTGCAACAGGCTCAGGGCCTCCCACGCCCTGGTCGTAGGGTCAGTGGGTCCAGCGTGTCAGCTGGCCCCACCCCTCAGCTTCCTGGAGGCCCCACCCCAGGT-----------GGCAGGG-----GTCAGG-TTGGGACCCTGGTCCAATGCACTGTGTG-GGGCGTGCAGGTGGCTCTGCAGCTTTGTTGAGGGCGTCTCTGGCCCTCTGGGGGGCAGCAGCAT---CTTCAGCCAAAGTGGGGGCTTCCTCCAGTGCTGGACACAGAGGCCCTGA-GGCTCTA---     
15 Phocoena_sinus-NC_045763.1-166347_166539                 78.0%  29.5%    --------------------CAGCTCTCCCCCAGGCTTGTCTGGGGCCAGGCCCAGGCCTTGCTGACCCGG-----CCAAAGGACCCTCTGGCTCC------------A----------------CTGTCGTGGT---------------------GCGGACCCCTCGG-GCCAGCCAGGGCTCCTGTGTCCCCCGGCCCGGAGCAC-AGCCACGTTGAGG---------------TCTTGC-CTGGGAGGGTGGACTTGAAGGAGGCAGCTCAC-ACTGCCTGATA--AAATAA-AAATAG-TTGGGGAGGAGACACCC------AGACGTACGGGGTCAT--GCCGCTTCTCAGACTAAACGTTTAAATAATCTCCAGCATACGTGAGTGGGCCTGTCTCTCCCTCCTGGAGGCCCCGGCCTCCTT----------------------------------------------------------------------------TCCCTTCTCCACCTGAGCACTGTCTGAGGGCCTACTGCATGCTGAGCTGGGCCCCCCGTGCAGCGTCGG---------------------------------------------------------------------------------------GGGAGGCTGGTGGGGGGCTGAGGACCCTGTGTGTCCTGCT--------------------------GTTACTGACCATTCTGAGTAAAGTGGACACAGGGAGGGTCCATTGGAAGGTCCTTCGAGAAGGCAAAGAAGCTTCGGAGGAG-----------GAAAGGGCT-GGAAGCAGACAAGCAGGGAGGGCAGATACTGGTTTGCCCCACGAAG---------GGCAAGCGAACATG--------------GTGTGTGTCCC--TTCTGGGGCGG--GCCTGCGGCT---CCGCGGGAGTCCATGTGTGCGCACGGGC----GT-------------------------------GTGTGCGCGTGCGTGCGTGTGTGTGTGCGCTCGTGCTGGGAAGCCTGTGGGTGTAATTTGTGGGTTTTATTGGAAGATTAAAT-TGATTTCCCAGTCTTCCCCGGGGGAGAGGTGGAGATGCCGCT-GTCACTGCT--CCCTCGTTG--CTGCCGCGTTAGGACAA----------------------GATCAATCTCGGCCATAAAAAAAAAATGAAGCCAGA-GCTACCCGGCTTCTGACCGTAAGG---------GCACTC--CTTCCTTGGAGCCATGGCCGCCAGTG-TCCCGCG-------------GCCGGCCGCCGTCCTCCGTGGGGCTTG-GGGCAGGAAG--GAGCCAG-GGGCTGG-GA--GCC--GCCTTCTGACAGCCGGGGGACCTGAG----GCAGGGGGCCGGGTG---------------------------------------------     
16 Balaenoptera_acutorostrata-NW_006725355.1-174992_175188  80.2%  28.5%    -------------------------------------------GGGCCAGACCCAGGCCTTGCTGACCCGG-----CCAGAGGACCCTCCGGCTCC------------A----------------CCGCCGTGGT---------------------GCGGAGCCCTCGG-TCCAGCCAGGGCTCCTGGGTCCCCCGGCCCGGAGCAC-AGCCACCCTGAGG---------------TCTTGC-CTGGGAGGGTGGGCTTGAAGGAGGCAGCTCAC-ACTCGCTGATA--AAATAA-AAATAG-TTGGGGAGGAGACACCC------AGACGTGCGGGGGCGT--GCCGCTTCTCA-----GACGTTTAAATAATCTCCACCATACGTGAGTGGGCCCGTCTCTCCCTCCTGGAGGCCCCGGCCTCCTT----------------------------------------------------------------------------CCCCTTCTCCACCTGAGCACCGTCTGAACGCCTACTGCACGCTGAGCTGGGTCCCCCGTGCAGTGCGGG---------------------------------------------------------------------------------------GGGAGGCTGGTGGGGGGCTGAGGACCCTGTGTGTCCCGCT--------------------------GTTACTGACCATTCTGAGTAAAGTGGACACGGGGAGGGTCCACTGGCAGGTCCTTCAAGAAGGCAAAGAAGCTTCGGAGGAG-----------GAAAGGGCT-GGAAGCAGACAAGCAGGGAGGGGAGGTGCTGGTTTGCCCCACGAAG---------GGCAAGCGAACAGG--------------GCGTGTGCCCC--TGCTGGGGCGG--GCCTGCGGCT---CCGCAGGGGTCCACGCGTGCGCACGTGC----GCG--TG-TGCGTGTGTGCGTGCGCGTGCACGTGTGTGCACGCGTGCACGTGTGTGTGTGCGCTCGCGCTGGGAAGCCTGTGGGTGTAATTTGCGGGTTTTGTTGGAAGGTTAAAT-TGATTTCCCAGCCTCCCCTGGGGGAGAGGCGGAGATGTCGCT-GCCACTGCT--CCCTCGCTG--CTGCCGCGTTAGGACAA----------------------GATCAAGCTCGGCCATAAAAACAAGATTAAGCCAGA-GCTACCCGGCTTCTGACCGCGAGG---------GCGCCC--CTTCCTTGGAGCCATGGCCGCCCGTG-TCCCGCG-------------GCCGGCCGCCGTCCTCCGTGGGGCTTG-GGGCAGGAAG--GGGCCAG-NNNNNNN-NN--NNN--NNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN---------------------------------------------     
17 Nannospalax_galili-NW_008355419.1-159166_159367          90.1%  38.0%    ---------------------------------------------------CCCAGCCCT----------------GC--------CTCAGGTGCCCC-------CAGG--------AGCAGGCACAGCTCCAGG-----------------------------------------------------------------------------------------------------AGTTCG-ACTGG---GGAGGGCAGGAACAAGCCAGCTCA-CATTCCTGATA--CAGTAA-AAATAGTTGGGGGGAGGTGGCACC-------CAGACGTGCGGGGGGGATGCATTGCTTCTCTCAGACGTTTAAATAAGCTTGGCCATATGTGTGTGGGCCCGTCCCTCCCTCCTGAGCGGCTCAGGGCTGGGCCG------GACTCGTCCCAGTGGG--TGCCCCTG----------GGGCTGGGGCAGGGCCA---TTTCCTCTTTCCTCATCTGCACCCCAGGTACCATCTAAGTGCCTGGTGTATGCTGGGCTGGCTGGCAGGTTGGAAGGTAA-----------CC-----------TGGG--------GAGGCTCACAGCTGCCA----------------------------------------------AGGAAGGGCTGGGGGAGCTCC-A---------------ATTTCTGAAGGCCTATACCACTGACCCTTCTAAGTAGGGTAGACTTGGGAAGAGTCCCCCCAAAAGTCCTTGAAGGCAA--G-GAGGCCTT----GAG-----------GAGGGAGCATCCAGGTCTGGGGTGGGCAGCTAGTTGTGTAGCCTAGGGCTGGG------------GCTGCCACTGGCTATGGGAGATGGTCT-CCATGCTTAGCCCAT-------AGTGCTCACA----------------CGGTAACATGTGTGG-----GTCCTG--TCCCACCTGTGGAATGAGGGCTGTCGTACCTGAAGGTGCCTCT---GTGTACATGTGCATGCTCCGTGAGGCCTGTGGGTGTGATTTGTGGGTTTATTGGGAGAAGAA-AT-TGATTTTCCAGCTTTCCCTCGGGAGAGACAA-GTCTGCTGAGCTGCCGTGGGCTCTTGTTCA--TAGCAGCCACCAAGCTGTGTTGCCTACTGTGTTAGGACAAGATTGATCTCCATCCCAGAGACAAAAACCACCCTGC-CGCTGCCAGTGTCTGTGGGCTC--------TGGGAGGGT--GGAGCCCAGGGCTGCAGGGACATG----CCTTTT-------------------------------GACAGTGGG-GGGACTGAGA--CAC-AGGGTGGAGAG-GACACCC--AAGCTTGATATGTAGGAGTTCCTGTT----TGCTGGCAGCT------------GCC----TTGGCCA-----------------------     
18 Hyaena_hyaena-NW_024080942.1-182053_182185               80.2%  24.8%    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACCGGCA---------------------CCCCAGGCCT--------TACAGTGGTGTTCTTACAGCAGGGTCCTGGGGTGGCCCCCTCTCTGTCTTGACTGTTGTCGCTTAGCCGGGACGTGGGGGCTGGT-GGCCT-------GGGC-CCCTGTTG----GCACTGC---CACCTGCCCGGTGCCCTCCTGGTCTCCAGCTGGGAGTTCCCTTGCCCTAA-ATCCTCTGGCCAGCTGGGCCGGACCCGGGCTTGGATTAGCACAGGGGAT-TGGGCAG-----------CGGGTGGGCGGGGCCGGCAGAGG---CCCTGCGGC--TGCCCCGCCCTCCGACTCTGGGACGCTGCTTCTTTGGGGATCCCTTCGT------------------------------------------------------------------------------------------GGCC------------CTGGTGGGTGGGCAGGCTGGCCTGAGGGCC---------------ATCGAGGACA--GCAGGCGACAGTCGGGCCAATGCCAGAGGGACCTGGGAGCAGCCCTGTGGG-GGCCTCGCAAGGC-----------TCTAAACAGGAGGAGGAAGAAGCGGGAGAGAGGAGGGGGGCCCGTG----GA----------------------GCCTGACCTGCGGCTGCGGCGGGGTGGGGGACACCGGC-----CCCCTTTGGCCTCCGTGGGCCACCCCTG--------GCCGTCG--TCCTAGAATGTCTGTGGCCTGGCCATCCACCCCCAGCCAGACAGGGGGAGCAGTGGCCTGCCTGGCAGAG--GCCCTCCTCTGGGTCGGAGCGAGTGTGGCTGTGTCCCCGCCGTGGCAGCTCGGCCCACTAGGTAAGGGAGCCCTGCCCTAGGGCCA--------------------------------------C--------TGGGCCGGGAGGGTGGGGGCTGCTTCTGGGGGTGCGAAAGCCCCCCCCCCCCCGCCGAAGCAAGCTT------GTAACTGCCTGCCCCTCA----GGTCTCCCTCTGGAGGTTACGGGATTCCCGTGGCAGCTCCGGCCCCCCCCCCCCCCCCCCCCCCGGGCCTAGACGCTGAGCACCAAGCAGGCGGCA-GGGAGAGCGG--GGGTGTGGGGATCAGGGGCAGGC--CCCTCGGTGTCCCGTGTGGAGCCCAGC---CTCCCTGTGCCCCCCCACCCCCCCCC-CC-ACCGCCACCGCCACCCTGGAGTGTCAGGAG     
19 Mesocricetus_auratus-NW_024429219.1-164250_164443        77.5%  31.0%    -------------------GAAGCTGGAGC---------TGCATGCCATGGGGCAGGCACTGCTGGAGGAAAAGGGCACATCCACCCAGCAGAGCAGGCCTGCTGTTCATTCCCGAGGGCAGCCTCAGGCCTGGTCAGACGGCCCCCGGGGCTAGGTAGTGGCTGTTGAGGGATTCCTGAGACTCTCTCTGCCTTGGCGCGGGTGCCCCCCCACCGCGAAAGTGAGCACAGCCCCTTGGGTC-TGGCCAGGGAGGGCGGGAACAAGCCGGCTCAC-ACTCCCTGATA--CAGTAA-AAATAGTTGGGGAGGAGGCGCCCAGACGTGCGGGGTGGTGGGGGAGGTTGCATTGCTGTTCTCAGACATTTAAATAAGCTTGGCCATATGTGTGTGGGCCTGTCCCTCCCTCCTGAGTGGCACAGGGCCAGGGGC----CGGGCTCATCCCGGTGGG--CTCCATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCT---GGGGCAGGACGGCTTCCT-----CCTTCCTCCACTCCACCCCAGCATTGTCTGGGACG-----------GC-----CT-GCATGTTGGGAGGCACCCGAGGAGGCTCGAGGC-------TAC------------AGGAAAAGGGCTGGGGGGAGCTTTGTT-CC-CTCATGTCCCAT----GCTGCTGGCCTTTGGAGCCCCACTTGCT-AGGTAACACGTGCA---------AGT--CCTGTTGGTGGGATGAGGGTCATCGTACCCCAAAGGTGCCCCCTGTGTGCATGTGTGCATGTCTGGCAAGGCCTGTGCGTGTGA--TTTGTGGTTTATTGGGAGAGTAAAT-TAATTTTACAGCTTTCCCCGGGGAGAGGCGA-GTTTGTTGAACGGCCGCTGCTCTCTTGTTCA-CCGCAGCCCTCAAGCTGCGTTGCCCACTGCGTTAGGACAAGATCGATCTCCCTCACAGAAGTAAAACGGCACCAGC-GGGCCCTGCCTCCCCCCCCGGGGGACAGCATGGGCTCTT--CCTCCTTCCAGCAGCTGCCAGTA-----TCTGTG-------------------------------GGCGCCAAG-GC-AGGAGGA--TCC-AGGGCTGAGGG-GG---CA--TGCCTCTCATCCGCAGGAGGACTGAG----GCGCAGAGGTGATGAGG-------------------------------------------     
20 Sturnira_hondurensis-NW_023520724.1-169200_169304        76.9%  27.1%    ----------------------------------------------------------------------------------------------------------------------------------------------------------------GACCCTCAG-ACCAGCCCTGGCTCCCACACCCCCAGGGCCTGGGCAC-AGCCCCCGGGCACAGCCCCCAGGCACA-GCCCCC-TGCAGGGGCGATGGTGTGAGGAGCAGACTCGC-ACTCTCTGATA--AAACAA-AAATAGTTGCCGGGGCAGAGGCAC------CCAGACACAGGGG-----------------------TCCCCCAATCCGCCCGGCCATCTGTGTGTGGGCCGCCC-CTCCCTCCAGGGAGGCCCAGCCTGGGGACAGCCC-------------------------------------------ATCCCTGC--ACAGCCTC-CAGCCTCTTCCTCCTTCCACCAAGGGCAGTCTGAGCGCCTACTGTGTGCTGAGCGAGAGTGACAAGAGGCGGAATCTC----------------------AGGGCTGCCGGGGG--TCCCAGGGTGCTGAGGACTGCGTG---GG-------------GGCTGAGGGCAGGGCCAGAGAGCCT-CAGTCCCACGTGGC-TGGT--------------------------GGTTTCTGACCATCCTAAGTACAGTGGACACAGCGGTGCCCACTGGAAAGTCCTTCAAGAG-GCAGAGAAGTTTGGAGGCAGACGAGGAAGAGGAAGGGGCA-GGAGATGGAGGAGCAGGGCCTTCAGGGGG-----------GCCGGCGG------------------------G--ACGT----GCACCCCCACGCCGCCGGAGCTTCCCCAGTGGAGGT---GCAAGTGACTTGGGGCTTGTGCACTGGC----TTG--CCCGCCGC---------------GGTGGGAGGGCCTGCC-----TGCATGAGCGTGTGCTCCGGCGTGAAGCCCATGGGTGTGCTTTGTGGGTTTTGTTGGGAGATTACAT-TGATTTCCCAGCCTTCCCCAGGGGAGAGGCGGGGGTGCTGAC-TGCGCTGGCC-TCTTGTCAC--CTGCTGTGTCAGGACGA----------------------GATTCGTCCCCACCGTGAGGACAAAACTAACCCAAG-GCTCCTGGCTTCTGACCGTGAGGG----------CTGGT--CC---CTGGAGCGGCTGCCTCGGTGG-CC--TGAGGCCGCTTTGTCCCCT--------------GCAGGGC-TTGGGGAAGAAGG--GAGCCTG-GGGCGGG-----CCT--GCCTCCCCTTCCTGGGAGCTGCTGAG----GCCAGGCGTCTGGGCCA--GGCACAG----TGCAAGGGCCCA------------------     
21 Prionailurus_bengalensis-NC_057345.1-181705_181837       80.2%  24.4%    ---------------C-----AGC------------------------------AGGGA-------------------------------------------------G-----------------GGCGGT------------------------GGGGGGACAGTGGACGGTCCCATGAGGACCGTCA---------------------CCCCAGGCCT--------TACAGCGGTGTTCTTTGGGTCCT--------GGGGTGGCCTCTCTGTCTTGCCTGTTG----------------------------------------TCGC-TCAGCCGG----GACGTGG---GGGCTGCCCGCTGCCCTCCTGGTCTCCAGCTGGGAGTTCCCTTGGCCTAA-ATCCTCTGGCCAGCTGGGCTGGACCCGGGCTTGGATTAGCACAGGGGAT-TGGGCAG-----------GGGGTGGGCGGGGCTTGCAGAGG---CCCTGCGGC--TGCCCTGCCCTCAGACTCTGGGACGCTGCTTCTTTGGGGATCCCTTCGT------------------------------------------------------------------------------------------GGCC------------CTGGCGGATGGGCAGGCTGACCTGGGGGCC---------------ATCTAGGACG--GCAGGTGACGGTTGGGCCAATGCCAGAGGGACCTGGGAGCAGCCCTGCGGG-GGCCTCGCAAGGC-----------TCTAAGCAGGAGGAGGAAGAGGAGGAAGAGAGAAGTTGGGCCCGTG----GAGCCCC-TGTGCCACCCGCCATTGCCTGACCTGCTGCTGAGGCGGGGTGGGGGACGCGGGC-----GTCCTTTGGCCTCCGAGAGCCACCCCTG--------GCCATCG--TCCTAGCATGTCTGTCCCCAGGCCGTCTACCCCCAGCCGGACCGGGGGAACAGTGGCCTGCCTGGCAGAG--GCCCTCCTCTGGGTCGGAGCGAGTGTAGCCGTGTCCCCGCCCTGGCAGCTAGGCCCGCTAGGTAAGGGGGCAGGCCTGGCCCTCCTCGGC-GGGAGCCC-CGCCCCAGAG----------CCACA--------GGGGCCAGGAGGGTGGGGGCTGCTTCTGGGCGTGCAAAAGGCC---CCCCTCCTCCAAAGCAAACCT------ATGACCTCCTGCCCCTCG----GGTCTCCCTCTGGGGGTCATGGGGCTCCCGCTGCACCCCCGGCCCACCTGTCTGA-----------------CCCCAGGGCGCCAGGCAGGCAGCG-GGGAGGGTGG--GGGTTCGGGGATCAGGGGCAGGG--CTGTGGTGGGCATGCTGGCTGGGCACTCAGGTGGCTATAAAACTTTTGCTGAG---------------------------GGGTC-----     
22 Artibeus_jamaicensis-NW_023552099.1-168612_168803        77.8%  27.2%    -------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGACCCTCGG-ACCAGCCCTGCCTCCCACACCCCCAGGGCCTGGGCAC-AGCCCCCAGGCAC-------------A-GCCCCT-TGCAGGGGG--ATGGCGTGCGGGCGGACTCTC-GCTCTCTAATG--AAACAA-AAATAGTTGCGGGGGCAGAGGCAC------CCAGACACGGGGG-----------------------TCCCCCCACCCACCCGGCCACCTGTGTGCGGGCTGCCC-CTCCCTCCAGGGAGGCCCAGCCCCGGGCCAGCCC-------------------------------------------ATCCCTGA--GCAGCCGC-CAGCCGCCTGGTCCTTCCACCAAGC-ACATCTGAGCGCCCACCGTGTGCTGAGCAAGAGTGAGAGGAGGGGCGATCTC----------------------AGGGCCGCCAGGGG--TCCCAGGGTGCTGAGGACTCCGTG---GG-------------GGCTGAGGGCAGGGCCAGGGAGCCT-CAGTCCCACGTGGC-TGGT--------------------------GGTGCTGACCATCCTAAGTACAGTGGACACCATCAGTGCCCACTGGAAAGGCCTTCAAGAG-GCAGAGAAGTTTGGAGGCGGAAGAGGAAGAGGAAGGGGCC-AGATGAA--AGAGCAGGGCCTGCCGGGGG-----------GCCGGTGGGACGCCCCCCCCCCCCACACCGACG--GAAC----TCACCCCCACGCCGCCGGAGCTTCCCAAATGCAGGC---GCAAGTGTCTTGGGGTCTGTGCACCAGC----CTG--CACCCCTC---------------GATGGGAGGGTCTGCCCGCGTGGCGTGTGCGTGAGCTCCGCCGAGAAGCCCGTGGGTGTGCTCTGTGGGTTTTGTTGGGAGATTACAT-CGATTTCCCAGCCTTCCCAGG--GAGAGGCGGGGGTGCCGAC-TGCGCTGGCC-TCTTGTCAC--CTGCTGTGTTAGGACGA----------------------GACTCGTCCCCACCATGAGGACAAAACTAACCCAAG-GCTCCTGGCTTCTGACCGCGAGGG----------CTCTT--CC---CTGGAGCGGCTGCCTGGTGTC-CT---GAGGCCGCTTTGTCCCCT--------------GCAGGGCTTTTTGGGAGAAGG--GAGCCTG-GGGCGGG-----GAT--GCCTCCCAATAGGTGCGGACAGAGGT----GAGGACCCCCTTTCTTG--GGAGCTG----------------------------------     
23 Puma_concolor-NW_020338243.1-180670_180802               80.2%  18.2%    ---------------C-----AGC------------------------------AGGGA-------------------------------------------------G-----------------GGCGGT------------------------GGGGAGACAGTGGACGGTCCCATGAGGACCATCA---------------------CCCCAGGCCT--------TACAGCGGTGTTCTTTGGGTCCT--------GGAGTGGCCTCTCTGTCTTGCCTGTTG----------------------------------------TCGC-TCAGCCGG----GACGTGG---GGGCTGCCTGCTGCCCTCCTGGTCTCCAGCTGGGAGTTCCCTTGGCCTAA-ATCCTCTGGCCAGCTGGGCTGGACCCGGGCTTGGATTAGCACAGGGGAT-TGGGCAG-----------GGGGTGGGCGGGGCTTGCAGAGG---CCCTGCGGC--TGCCCTGCCCTCAGACTCTGGGACGCTGCTTCTTTGGGGATCCCTTCGT------------------------------------------------------------------------------------------GGCC------------CTGGTGGATGGGCAGGCTGACCTGGGGGCC---------------ATCTAGGACG--GCAGGTGACGGTTGGGCCAATGCCAGAGGGACCTGGGAGCAGCCCCGCGGG-GGCCTCGCAAGGC-----------TCTAAGCAGGAGGAGGAAGAGGAGGAAGAGAGAAGGAGGGCCCGTG----GAGCCCC-TGTGCCACCCGCCATTGCCTGACCTGCTGCTGAGGCGGGGTGGGGGACGCGGGC-----GTCCTTTGGCCTCTGTGAGCCACCCCTG--------GCCATCG--TCCTAGCATGTCTGTCCCCTGGCCGTCTACCCCCAGCCGGACCGGGGGAACAGTGGCCTGCCTGGCAGAG--GCCCTCCTCTGGGTGGGAGCGAGCGTGGCCGTGTCCCCGCCGTGGCAGCTCGGCCCGCTAGGTAAGGGGGCAGGCCTGGCCCTCCTCGGC-GGGAGTGC-CGCCTCAGAG----------CCACA--------GGGGCCAGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------------NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------NNNNN-----     
24 Bos_mutus-NW_005393029.1-166584_166685                   76.9%  29.4%    -------------------------------------------------------------------------------------------------------------------------------TGCCTGGT---------------------GTGGACCCCTCAG-GC-CAGCCTGGGCTCTATGCCCCCAGGCCCTGGGCAC-AGCTTCCGCGAGG---------------TCTCGT-CTGGGAGGGTGGACTTGAAGGCGCCAGCTCAC-ACTGCCTGGTA--AAATAA--AAATAGTTGGGGTGGAGGCTCCC------AGACG----TGCGGGG--GGACGCGCTGCTTCTAGACGTTTAAATAATCTCCGCCATATGTGAGTGGGCCCGTCCCTCCCTCCTGGAGGCGCCGGCCAGGGGCTGAGGCCCC--GTGGGCGCTGGAG--CCCGGCAC--------ACT--------------GGCCCTGT-CCGCCTTCCCCTTCTCCAGCCAAGCACTGTCTGAGCACCCACTGCGTGCTGAGCTGGGCCCGCCATGCAGTGTGGGGAGA----------------GGGCGGAGGGCT-GAGGACCCAGTGGGGGCCTG-----------------------------CAGTGGGGGCAGGGCCGGAGCAGCCTTGGGCCCGTGTGTCCCACT--------------------------GTTGCTGACCACTCTGAGCAGAGTGGATGCAGGAGTGGCCTGTTCAAAGGTTCTTTAAGAAAGCGCAG-------------------------------------------------AAGCCTTA--GAGG----AGGGAGGGGCTGGA---------GGCAGGCAAGCAGG--------------AGGGGAGA------TACAGGTTTGCCCTCTGAAAGG---TGAGTGGAT--AAGGCAGGTGCCCCGCA----TG------GAGAGC--CTGGGTGCCGCAAGTGTCCGTGTGCATGCGTGCGTGTGTGTGTGTGCTCGCGCCAGGAAGACTGTGGGTGTAATTTGTGGGTTTTGTTGGAAGATTAAAT-TGATTTTCCAGTCTTCCCAAGGGGGAGGTG----------------------GAG-GTGCTGG--CTGCTGTGTTAGGACAA----------------------GATCGATCTTGGCCATAAAAACAAAATTAAGCCAGA-GCTGCCCAGCTTCTGACCGGACTGCG----AGGGCACTC--CCTCCTTGGCGCA------------------GTGGCCGCCCATGTCCCATGGCCGCCGTCCTCCTCAGGGCTTG-GGGAAGGAAG--GAGCGAA-GGGCTGG-GG--GCC--ACCTTCTCACAGCCAGGGGAACAGAG----GCGGGGGACAAGGTGAG--GCGCCTG----AGGCCTCCACTTC--CTGGCGGTGCT----     
25 Heterocephalus_glaber-NW_004624818.1-169230_169376       85.5%  34.2%    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCCTGGCTCTGGTGTC---CTGGAGGGACAGGCAGCACCACCATGGGGTCC-TGC-TGGGGGAGGCTGGAGGGAGCCGACTCAC-GCTCCCTGATA--AAGTAA-AAATAGTTGGGGAGGAGGCACC---------CAGACGTGCGGGGGGGACGAGTCGCTTCTCCCAGCCGTTTAAATAATCTCGGCCATATGTGTGTGGGCCCATCCCTCCCTCCCTCCGAGCGGAGCTGGCCAGGG-GC-TGGGCTTCTCCCAGCGGG--TGCAGCC--------ACAGGACTGGGGCAGGAGGC---TGCCTGCTTTCCTTCTCTCC------ACAGCAGTCTGAGCACCTGCTGTATGCAGAGCTGGGCCCCAGCAGAGTGGGGGCGGGGAAAGGGCAG------------GAGCCC-----AGCTCTGCAATGTCCCACAGAGACGGGG-----------TCACT--CT----------------AAGTGGGGTGGA-------------------------CACGGGAAGGCCCCCTGC------------AAGGCACAGAGGAGGGACAGA-------------GGCCCGGGGCTCAGGCCC---AGGGGCCCGTGCG-----------GTGGTGCCCTGCAGGGAGGCGGGAA----CG-GTCCCTCAG--------CCCG------------GCTGCACATCCTCTGAGTTAGTCTGTG-CAGTTGCTGTGCCCT----GCTCCTGGGAGGGGGCTGCACACCTGCAGGTGCCCCGTGTGTGTGTGT-GTGTGT--GTGTGTGTGTGTGTGTGTGTCTGTGTGCACTCA-------------CAGGCACACGCGTGCACCACTAAGCCCATGGGTGTCACTGTGTGGGTTTTGTTGGAGGATTAAAT-TGATTTTCCAGCTTTCCCCGGGGAAGAGGCAGGGACACTGAGCTGCTGCTGGCCTCTTGTGGA--TGGTGGCCCGAGGCCAGGTCACCTGCTGCTGTAGGACAAGACTGATCCTCAGCGCACACAACCGCACGGCACCGCCACCAGCATCACC------A-----------GTGCTCCCT--CCTCCTCATGGCTGCCTCT-GGGT----CCTGTG-------------------------------CAGGCTTGA-GGAGGAAGGA--GTG-TGGGTGAGGCA-GG---TG--CGCCTTGGCACTGTGGGGAAACTGAG----GCATGGGTGGGTAGGTG--CT--GCC----GTGGGGGGCGG-------------------     
   clustal                                                                                                                                                                                                                                                                                                                                                                                                                                                               . .                                                                                                                                                                                                                                                                                                                                                                               .                                                                                                                                                                                                                                                                                                                        *      .       . *         ..    .   .     .       *                                                                                        .